CmaCh20G004640 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G004640
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description40S ribosomal protein S23
LocationCma_Chr20: 2237640 .. 2240631 (-)
RNA-Seq ExpressionCmaCh20G004640
SyntenyCmaCh20G004640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACCCAGAATTTTGAAATGAATGTAAGATGGTGCAAGATAAGGAGGCAGAGGGAGGATCAGCTCCATTGCTGTACACCGGTAAGTGCTGAGAAATGATGTCTGTTTTAATGGAGGCTATCCTCCTCCCCCGTAAATTTAGAGATTCAAATCTGTCACTCTAAAGGTTACGTTGAACTCAAAAAGAAAAAAAAAATTGAACTAGATTTTAATGATAGTGACTTTGTGACGTCCCATCTCGACTTCAACTTAGTTTAATTAGTTGCTGGTTTTCTACCAAATTCAGAGATTTTTCCCTTTATCATGATTCACACTCGGGGAAAAGGAATTCGAAAAGGACAACGAAAAAGGTTATCTCATCTCTCAGCCATAAGCTTATTGTGCCGATGTTTGCCCTTTAGAAAAACACGAAGGGGCAACAAGTTGACCTAAAAGAATCCTAGCTAGTTCGTGCTGACACTTTTCATTCAAAAATTTATTCTACCGAGTAGGTTTTTGAGCTTTTGGTAGCAAGTCAAAAGTTTTAGTCAGAAGCTTTCTCCTACTATTTTCACTCTCTCTGAGTTGCCAAGAAAAAACAGTGTTAAAGTAGCACTCGAGATCTAAGAGTGTGAGCAGTTCAAGCTGAAAGGCTCCCATACTGTTTATATGCTCGAGATTTAAGAGTGTGAGCAGTAAAGTTGAAAGGCGCTCTCTCCTACTATTTTCCCTCGCTCTGAGTTGCTAAGAAAAAACAGTATTGAAGTAGCGCTCGAGATCTAAAAGTGTGAGCAGTTCAAGCTGAAAGGCTCCCATACTGTTTATATGCTTGAGATCTGAGTGTGAGCAGTTCAAGCTGAAAGGCTCCCATACTGTTTATATGCTTGAGATCTGAGTGTGAGCAGTACAAGCTGAAAGGCTCCCATACTGTTTATATGCTTGAGATCTGAGTGTGAGCAGTACAAGTTGAAAGGCTCCGGGCTGTTTATATGGTTTATTTGGGTGATTTCTATATCTTCTAATCAAATTTAGGGGAAAATTAATTTCTTCCGTTATTAAAAAAATAATAATAAAGATTAAATAGACAATAACATATAACATGGGAAACTAATTTTATTTATTAATTTGCAATTTACAAAAAGAAATCCTCAAAAAGAAAAAAAAAAAAAAAAAGAAAATTAACAAGGCGATGCCAACGTGGCAAATTAGTTGTATTTCAGCGAGGATTGGCTTAGCGAAGAACCTCAATATAAAAGCTATGCAACAAGCCTAGGGTTTCTCATCACAGACGGTGCGGCGGCCTCATCACACTAGCATCGTCTCTACCGGCGTCGGAACTTCGCTACCGTACTTGAAGATCCTCTTCTCGCACTCACCATGGGGTATGTCCTCTCTCTATCCTATTTTGGTGTTCCCGAATTGTTTATCGAGATGAGTGTTCTAGGGAAAGAAATAGACAATTTAGTTGAGATTTGCTTGGCTTTACTGGACCATATCCATTTAGAAGATCGAAAAATAGAAGTTCATCTGTTGGCGGGAGTCGCCGATTTATTTCCTTATTGTTTCGTTACTATCGTTCTACATGTGGGAAGAACAGTAGTTGCATCTGGCTTAAGATTGTAGGATACGACTGTGCGCCTAATTTTAATGTGAACAAGTTTGTGGCTATGATTCTAGCTTAATTTAACGAATTTTTACTCCATTTTGATGTTTTTTTGGCTAAAAAAGAATAAATGTCGTTTCTTAACCACTGGAAAAGTTGGCGTTGCTTAGTACAAGCATTCTTGATGGTATGAATATCGTTATGACTTCGATTGAACTGTTAAATGTTTTATTAGTTAATAGCCTTAAATCTAGAGGAAAAATTGACGAGGCTTTCAGGGAATTTGGAAAAAGGACTATGTTTTGTTCAAAGCGGCAGCTGTATTCTCTTTGTTAAAGTAGCAGTAATATCTTACAGGAAAACACGTGGAATGGGAGCGGGACGCAAGCTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCGTACAAGAAATCCCATCTTGGAAACGAATGGAAGAAACCATTTGCCGGATCTTCCCATGCAAAAGGCATTGTTCTCGAAAAGATGTAAGATGATTTTATTGCTGCTGTTCTTTTCTGAGGCGTAATTAACAAAATCCAATTTAATAAATAGTTTTCTGGTGCAATGTGCAGTGGTATAGAGGCTAAGCAGCCTAACTCTGCTATCAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGGAAGAAGATTGCGGCGTTTGTTCCGAATGATGGTTGCTTAAATTACATTGAAGAGAATGTAAGTATTTGAGGGAAGCTTGGGATTTTCGTTACTATTATCCTCTATTTTTCTTAATATTTATTGGCATGAACAGGACGAAGTTCTCATTGCTGGATTTGGTCGAAAAGGACACGCCGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTTTCAGGTGTATCTCTTCTTGCTCTGTTCAAGGAAAAGAAGGAGAAGCCAAGGTCTTAAGCTAAGGTAGATTATGTCTCCATTTTCTTCTTTTCTGGCCAGAGACAACTAATGAGACAACAAATCACGAGTTAAGTTAGATTATCGGATCGGGTGATAGAAACTTTTGCACTGCAATTCTATTGTTGAGACTTGATTATCAAGCATGATTTTCTTTGCAATGAGAACAGCTTCTGTTATTGTGTTAATTTCAGTGAGTTTTGTCTTGGAATGATTCTGTTGATTCTAGAGTGAATGTCTAGTCTAGCCTTTTCACTTCCATGAATCATGGGGCTTAATAACAACACTATCATATGCTGTCGATCCTTCTTATTTTCAGAGATTATTAAATGGGTCAGAGGATGATAATCCTACAAGAACATAATCAATCATGAAATGGCGCTTTCATACATCCTTGATTGGATTGCTGGGGCAGTACTAACTTGGTCGGTCTTGTATTGCCTTTGTCTTTCCTGAACCACAG

mRNA sequence

ATGGAAACCCAGAATTTTGAAATGAATGTAAGATGGTGCAAGATAAGGAGGCAGAGGGAGGATCAGCTCCATTGCTGTACACCGCATCGTCTCTACCGGCGTCGGAACTTCGCTACCGTACTTGAAGATCCTCTTCTCGCACTCACCATGGGGAAAACACGTGGAATGGGAGCGGGACGCAAGCTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCGTACAAGAAATCCCATCTTGGAAACGAATGGAAGAAACCATTTGCCGGATCTTCCCATGCAAAAGGCATTGTTCTCGAAAAGATTGGTATAGAGGCTAAGCAGCCTAACTCTGCTATCAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGGAAGAAGATTGCGGCGTTTGTTCCGAATGATGGTTGCTTAAATTACATTGAAGAGAATGACGAAGTTCTCATTGCTGGATTTGGTCGAAAAGGACACGCCGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTTTCAGGTGTATCTCTTCTTGCTCTGTTCAAGGAAAAGAAGGAGAAGCCAAGGTCTTAAGCTAAGGTAGATTATGTCTCCATTTTCTTCTTTTCTGGCCAGAGACAACTAATGAGACAACAAATCACGAGTTAAGTTAGATTATCGGATCGGGTGATAGAAACTTTTGCACTGCAATTCTATTGTTGAGACTTGATTATCAAGCATGATTTTCTTTGCAATGAGAACAGCTTCTGTTATTGTGTTAATTTCAGTGAGTTTTGTCTTGGAATGATTCTGTTGATTCTAGAGTGAATGTCTAGTCTAGCCTTTTCACTTCCATGAATCATGGGGCTTAATAACAACACTATCATATGCTGTCGATCCTTCTTATTTTCAGAGATTATTAAATGGGTCAGAGGATGATAATCCTACAAGAACATAATCAATCATGAAATGGCGCTTTCATACATCCTTGATTGGATTGCTGGGGCAGTACTAACTTGGTCGGTCTTGTATTGCCTTTGTCTTTCCTGAACCACAG

Coding sequence (CDS)

ATGGAAACCCAGAATTTTGAAATGAATGTAAGATGGTGCAAGATAAGGAGGCAGAGGGAGGATCAGCTCCATTGCTGTACACCGCATCGTCTCTACCGGCGTCGGAACTTCGCTACCGTACTTGAAGATCCTCTTCTCGCACTCACCATGGGGAAAACACGTGGAATGGGAGCGGGACGCAAGCTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCGTACAAGAAATCCCATCTTGGAAACGAATGGAAGAAACCATTTGCCGGATCTTCCCATGCAAAAGGCATTGTTCTCGAAAAGATTGGTATAGAGGCTAAGCAGCCTAACTCTGCTATCAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGGAAGAAGATTGCGGCGTTTGTTCCGAATGATGGTTGCTTAAATTACATTGAAGAGAATGACGAAGTTCTCATTGCTGGATTTGGTCGAAAAGGACACGCCGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTTTCAGGTGTATCTCTTCTTGCTCTGTTCAAGGAAAAGAAGGAGAAGCCAAGGTCTTAA

Protein sequence

METQNFEMNVRWCKIRRQREDQLHCCTPHRLYRRRNFATVLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Homology
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BLAST of CmaCh20G004640 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.5e-74
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 50  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 109
           MGKTRGMGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 110 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 169
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 170 VVKVSGVSLLALFKEKKEKPRS 192
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CmaCh20G004640 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.3e-73
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 50  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 109
           MGKT GMGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 110 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 169
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 170 VVKVSGVSLLALFKEKKEKPRS 192
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CmaCh20G004640 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 271.9 bits (694), Expect = 5.4e-72
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 0 

Query: 50  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 109
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 110 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 169
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 170 VVKVSGVSLLALFKEKKEKPRS 192
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CmaCh20G004640 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 263.1 bits (671), Expect = 2.5e-69
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0 

Query: 50  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 109
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 110 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 169
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 170 VVKVSGVSLLALFKEKKEKPRS 192
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CmaCh20G004640 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.6e-62
Identity = 116/143 (81.12%), Postives = 127/143 (88.81%), Query Frame = 0 

Query: 50  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 109
           MGK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60

Query: 110 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 169
           QPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 170 KVVKVSGVSLLALFKEKKEKPRS 192
           KVVKV+ VSLLAL+K+KKE+PRS
Sbjct: 121 KVVKVASVSLLALYKQKKERPRS 143

[Close]
BLAST of CmaCh20G004640 vs. ExPASy TrEMBL
Match: A0A200QHJ3 (Ribosomal protein S12/S23 OS=Macleaya cordata OX=56857 GN=BVC80_1751g75 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.3e-76
Identity = 148/161 (91.93%), Postives = 152/161 (94.41%), Query Frame = 0 

Query: 31  LYRRRNFATVLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFA 90
           LY   N A  +E+ LL + MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFA
Sbjct: 631 LYSSPNLAFAVEEHLLTVIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFA 690

Query: 91  GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI 150
           GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Sbjct: 691 GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI 750

Query: 151 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 192
           AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 751 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 791

[Close]
BLAST of CmaCh20G004640 vs. ExPASy TrEMBL
Match: A0A5B6Z065 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_006978 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 0 

Query: 24  HCCT--PHRLYRRRNFATVLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHL 83
           HC +  P   Y +   +   ++P L+ TMGKTRGMGAGRKLKSHRRRQRWADKAYKKS+L
Sbjct: 4   HCASRPPSLPYSKLTSSVTGQEPPLSATMGKTRGMGAGRKLKSHRRRQRWADKAYKKSNL 63

Query: 84  GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 143
           GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY
Sbjct: 64  GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 123

Query: 144 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 192
           IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 124 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 173

[Close]
BLAST of CmaCh20G004640 vs. ExPASy TrEMBL
Match: A0A5B7CBP6 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_047868 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 0 

Query: 24  HCCT--PHRLYRRRNFATVLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHL 83
           HC +  P   Y +   +   ++P L+ TMGKTRGMGAGRKLKSHRRRQRWADKAYKKS+L
Sbjct: 10  HCASRPPSLPYSKLTSSVTGQEPPLSATMGKTRGMGAGRKLKSHRRRQRWADKAYKKSNL 69

Query: 84  GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 143
           GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY
Sbjct: 70  GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 129

Query: 144 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 192
           IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 130 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 179

[Close]
BLAST of CmaCh20G004640 vs. ExPASy TrEMBL
Match: A0A314Y3H1 (Putative serine/threonine-protein kinase MARK-A isoform X2 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_11962 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 147/164 (89.63%), Postives = 151/164 (92.07%), Query Frame = 0 

Query: 28  PHRLYRRRNFATVLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKK 87
           P RL     FA  ++D LL+  MGKTRGMGA RKLK HRRRQRWADK+YKKSHLGNEWKK
Sbjct: 221 PLRLSALGTFAAEVQDSLLSAAMGKTRGMGAARKLKDHRRRQRWADKSYKKSHLGNEWKK 280

Query: 88  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 147
           PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE
Sbjct: 281 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 340

Query: 148 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 192
           VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 341 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 384

[Close]
BLAST of CmaCh20G004640 vs. ExPASy TrEMBL
Match: M5X0T9 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012246mg PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.1e-75
Identity = 146/164 (89.02%), Postives = 150/164 (91.46%), Query Frame = 0 

Query: 28  PHRLYRRRNFATVLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKK 87
           P RL     FA  ++D  L+  MGKTRGMGA RKLK HRRRQRWADK+YKKSHLGNEWKK
Sbjct: 15  PLRLSALSTFAAEVQDSTLSAAMGKTRGMGAARKLKDHRRRQRWADKSYKKSHLGNEWKK 74

Query: 88  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 147
           PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE
Sbjct: 75  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 134

Query: 148 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 192
           VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 135 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 178

[Close]
BLAST of CmaCh20G004640 vs. NCBI nr
Match: KAG6570758.1 (40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 322.4 bits (825), Expect = 2.6e-84
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 0 

Query: 29  HRLYRRRNFATVLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKP 88
           HRLYRRRNF T+LEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKP
Sbjct: 23  HRLYRRRNFTTLLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKP 82

Query: 89  FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV 148
           FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV
Sbjct: 83  FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEV 142

Query: 149 LIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 191
           LIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 143 LIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 184

[Close]
BLAST of CmaCh20G004640 vs. NCBI nr
Match: OVA09919.1 (Ribosomal protein S12/S23 [Macleaya cordata])

HSP 1 Score: 295.8 bits (756), Expect = 2.6e-76
Identity = 148/161 (91.93%), Postives = 152/161 (94.41%), Query Frame = 0 

Query: 31  LYRRRNFATVLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFA 90
           LY   N A  +E+ LL + MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFA
Sbjct: 631 LYSSPNLAFAVEEHLLTVIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFA 690

Query: 91  GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI 150
           GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Sbjct: 691 GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI 750

Query: 151 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 192
           AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 751 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 791

[Close]
BLAST of CmaCh20G004640 vs. NCBI nr
Match: KAG6596454.1 (Interactor of constitutive active ROPs 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293.9 bits (751), Expect = 1.0e-75
Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 41  LEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVL 100
           +E+P+L+  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVL
Sbjct: 597 VEEPVLSANMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVL 656

Query: 101 EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV 160
           EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV
Sbjct: 657 EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV 716

Query: 161 GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 192
           GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 717 GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 747

[Close]
BLAST of CmaCh20G004640 vs. NCBI nr
Match: PQP99408.1 (putative serine/threonine-protein kinase MARK-A isoform X2 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 292.4 bits (747), Expect = 2.9e-75
Identity = 147/164 (89.63%), Postives = 151/164 (92.07%), Query Frame = 0 

Query: 28  PHRLYRRRNFATVLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKK 87
           P RL     FA  ++D LL+  MGKTRGMGA RKLK HRRRQRWADK+YKKSHLGNEWKK
Sbjct: 221 PLRLSALGTFAAEVQDSLLSAAMGKTRGMGAARKLKDHRRRQRWADKSYKKSHLGNEWKK 280

Query: 88  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 147
           PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE
Sbjct: 281 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 340

Query: 148 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 192
           VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 341 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 384

[Close]
BLAST of CmaCh20G004640 vs. NCBI nr
Match: KAG6580588.1 (40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.0 bits (746), Expect = 3.8e-75
Identity = 143/153 (93.46%), Postives = 150/153 (98.04%), Query Frame = 0 

Query: 39  TVLEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGI 98
           + +E+P+++  MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGI
Sbjct: 405 STVEEPVVSANMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGI 464

Query: 99  VLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGH 158
           VLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGH
Sbjct: 465 VLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGH 524

Query: 159 AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 192
           AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 525 AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 557

[Close]
BLAST of CmaCh20G004640 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 271.9 bits (694), Expect = 3.8e-73
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 0 

Query: 50  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 109
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 110 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 169
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 170 VVKVSGVSLLALFKEKKEKPRS 192
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CmaCh20G004640 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 263.1 bits (671), Expect = 1.8e-70
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0 

Query: 50  MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 109
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 110 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 169
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 170 VVKVSGVSLLALFKEKKEKPRS 192
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of CmaCh20G004640 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 83  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 142
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 143 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 173
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of CmaCh20G004640 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 83  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 142
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 143 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 173
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of CmaCh20G004640 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 83  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 142
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 143 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 173
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

The following BLAST results are available for this feature:
BLAST of CmaCh20G004640 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462971.5e-7497.8940S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1[more]
Q9M5Z91.3e-7397.1840S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1[more]
P492015.4e-7296.4840S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2[more]
Q9SF352.5e-6994.3740S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2[more]
Q9GRJ36.6e-6281.1240S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1[more]
BLAST of CmaCh20G004640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A200QHJ31.3e-7691.93Ribosomal protein S12/S23 OS=Macleaya cordata OX=56857 GN=BVC80_1751g75 PE=3 SV=... [more]
A0A5B6Z0651.4e-7587.06Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_006978... [more]
A0A5B7CBP61.4e-7587.06Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_047868... [more]
A0A314Y3H11.4e-7589.63Putative serine/threonine-protein kinase MARK-A isoform X2 OS=Prunus yedoensis v... [more]
M5X0T94.1e-7589.02Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012246mg PE=3 SV=1[more]
BLAST of CmaCh20G004640 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570758.12.6e-8498.7740S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia][more]
OVA09919.12.6e-7691.93Ribosomal protein S12/S23 [Macleaya cordata][more]
KAG6596454.11.0e-7596.03Interactor of constitutive active ROPs 2, chloroplastic, partial [Cucurbita argy... [more]
PQP99408.12.9e-7589.63putative serine/threonine-protein kinase MARK-A isoform X2 [Prunus yedoensis var... [more]
KAG6580588.13.8e-7593.4640S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh20G004640 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02960.13.8e-7396.48Ribosomal protein S12/S23 family protein [more]
AT3G09680.11.8e-7094.37Ribosomal protein S12/S23 family protein [more]
ATCG00065.15.2e-0636.26ribosomal protein S12A [more]
ATCG01230.15.2e-0636.26ribosomal protein S12B [more]
ATCG00905.15.2e-0636.26ribosomal protein S12C [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 74..191
e-value: 1.0E-46
score: 159.3
NoneNo IPR availablePANTHERPTHR11652:SF59BNACNNG03140D PROTEINcoord: 40..191
IPR005680Ribosomal protein S23, eukaryotic/archaealTIGRFAMTIGR00982TIGR00982coord: 55..190
e-value: 1.8E-52
score: 174.7
IPR005680Ribosomal protein S23, eukaryotic/archaealCDDcd03367Ribosomal_S23coord: 75..188
e-value: 4.22744E-78
score: 226.767
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 80..190
e-value: 1.7E-49
score: 166.2
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 40..191
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 108..115
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 69..189

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G004640.1CmaCh20G004640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0016301 kinase activity
molecular_function GO:0003735 structural constituent of ribosome