CmaCh20G004390 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G004390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NOT2 / NOT3 / NOT5 family
Location	Cma_Chr20: 2078017 .. 2083393 (-)
RNA-Seq Expression	CmaCh20G004390
Synteny	CmaCh20G004390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGTTTACTTAATGTATTGTCAGCTATCTACGTTTCTATATGTCTATGATTGCATTGGGACGTGTATGGAGTTGAGTTACATACGATTTCTCTTTAAGTTTATTGCAGATACTCTCATTGCTTATCTGATTCTGTGCACTAGTCATTGCATCTATAGTTCACGGAAATTATAGTAATTTCAGAAGCAAAGTAATTCTTAACCTTGGTGTATCATGTGTGTGGTGGTGGGTGGGGGGAATTCTTTTTGTTTTGTTAAATTTAATTTACATTTCATGTAGTATTTTAGTTGTAATTGGTTCAAGACTTTCTTGTTAGATAAGAATGTTATTCTTTTGATTGCTGAAATTCCATTTTAATTGAATTCCTCATTCTTATTGGGTTTCTAGTTGACTTTGGTTGATTTAATCTTAAGTTTATAACTATCAGCAACATTTGTTAACTTATTATAACGTACTGTTGTAAATGATAGTTCTTCCCCTTTTTATGTTGATGCATTATACTTAGACTGCAAAATTGTCTGTGTGAAATTTAAAATTGTACAAGAAAACAGGGTTTGTTTATTGCCGTAGTTTTGTTCGTTGCAGTCATCTCTTAATGGATCAGCTTCGAATGTTCCAGATGGAGCTGGGCGATCTTTTGCTACCTCATTTTCTGGTCAATCTGGCGCAGCCTCCCCTGTTTTTCATCACTCTGGTGGGTGCATGTTCTTAGAGTTTCTATATTTTTATTCAAATTTATGAAACTTAGAGGTCCCAATTTCCAGGAACTATGCAAGGGTTGCATAACATTCATGGAAGCTTCAATATTCAGAACATGTCAGGTGCACTAGCTTTGAGAAATTCAACGATTAATAATGTTCCATCTGGTGGGGTGCAGCAACCTACTGGAACACTTTCCAGTGGGCGTTATGCTGCATCAAACAACCTTCCTGTTGCTCTCTCACAGGTATGTTTCAAGGTCAAGCTATTTATTCAGAACTCAATGCCACCTTATTGACTGAGATCCTTAGCATCAGTTTTCCCTGTAGTTTTGATAGTCACCTTTATGGTGCTCACCAAAATTTAGCTGTTGTACAATGACATATTTTAGATATTTGATCACTCTGCCTATCAAATAAAATTGCACTCAACTGCAATTATTTTTGAAAGATTATTGTAATTATTATTATAGAAGAATTTGGACGTCCAATAGCTTTGTTGATGAAGGAATGAGTGAGAATTACTTTTCAAATAGGTTATCGGATCATAATATTTTATTATTGGACTTGTTATTGGAATTTCCGAACATAACCATGAAATGACATCTTTTAAGAGATTCAGAGGCAATGAAGGTGAAATTATAATCTTTTTCATTTCCATAACCCTTGTAAGTTTATGTCCTTCCACTCCAGTTTTACTGTTTTCTTTTCTTCCGTAGTTGTCTCATGGCGGCTCTCATGGGCATTTAGGAGTTGCAAATAGAGGAGGTATAAGTGTTGTAGGAAATCCTGGATTTAGTAGCAGCACAAATGCAGTTGGTGGTTCTATCCCTGGGATTCTGTCTAGTTCTGCTGGTATTGGTAATCGAAATACTGTTCCAGGGTTGGGTGTATCTCCAATTTTGGGAAATTCAGGTCCTCGGATCACAAGTTCAATGGGAAATATGGTAAGTGGAGGCAACATAGGAAGGAGTATAACTTCTGGTGGGGGATTGTCATTACCTGGTCTTTCTTCTCGTCTAAACCTTGGTGCTAATAGTGGATCTGGAAGTTTATCTGTGCAAGGACAAAACCGTTTAATGAGTGGTGTGCTTCCACAAGGTACAATCCCTTGAATCTCTGAATGAATGCCTGTATAATGATTCTCCTATAAAAAGAAAAATGCTTGTGTAACGATTCATAATAATGTTGTCACCTCTCTTTTGTACTACTTGTACTCTACAATGCAAGGTATTAGATACTAGCTTAGAAATAAATCAATTGGGTTTGTTTGATAGAGTGATGTGGTGCGGTATCTGGAAGCTATTTACTCATTTTACTTTGTTTTCTAGTACTATCCTATTCATGCTCTTATTTTTAATATTTTTTAAAAATTTTATATAAGAAACTAGAGAATTTTATTGAACTGCCAAACAAACATGGGGAATGAAATACCCCTGCTCAGTCCATGGTTACAAAAAAGAAGTCCAATTGGCAGAAATGCACTTACAAAGTTTACGGGAGATGAATTGTTAATTATGATTAAGTTGTGTCTTTTTACTTAAGTTTGACAAATATCTTATTTCTGATGCTGTTCTAACCAGAAAATAAATGGAAATGCATTCATTACAATGCTCTTATATATGTATGCTACCTTGTGGTTAAAAGTGTTCTATGCTGTTTTGTGGTAGATGACATTTCTTGCTTCAGGATCTCAACAGGTCATTTCTATGTTGGGTAATTCTTATCCTAGCGCCGGAGGTCCCCTTTCCCAAAATCATATGCAGAGCGTGAATAGTCTCAGTTCTCTGGGGATGTTGAATGATGTGAATGCTAATGACAATTCTCCTTTTGATATCAACGATTTCCCTCAGTTGACTAGTCGTCCAAGTTCTGCAGGAGGGCCTCAAGGGCAATTAAGTTAGTGACTAGGCATTGTTGGTGTCTAAAATTTATTTTTTAATAATTATTTTTTCTCTGCACCAATTTTGACCTTTAGGAATGTCATGTAAACATTTCAGGCTCGCTGAGAAAACAAGGCCTTAGTCCTATTGTCCAACAAAACCAGGAGTTCAGCATTCAGAATGAAGATTTTCCAGCGTTACCTAGATTTAAAGGTGCAAATCCCTTTTTTGCTTCCCACAGCATGCATTCATGTAACTCATTAGGCTTTTCCCTCTAATCTTGTTCAAGAATAACACAATAATTTTGGAGAACTATTGCTTGTAAATATTCTAGTTGACCATGAGTTATAGCTGAACCGATTAAGTAGAATTTCATAATTTATTATTCACGTAGGCTATTGCAATAATTAAGCTCAGCTGCTACTTCATGGTGAGTTCTGAAATTGTTTTTCTCTCATCAGCCTGGATTATCAATTCATCTCATCATAACCTACATTGTCCTTTTGCGCACTTCAGATATAGAACACTTTCTATTATTGATTATAGTTCTAGATCTAGTGCAGGTGGGAATGCTGATTATGGCATGGATATGCATCAGACAGAACAACATGAAAATTCTGTGCCTATGATGCAGTCGCAGCAGTTCTCTGTGGGAACACTTTTTTACACTCTTCTGCTGACTATCCCATTTGGTTTTGGGCTAGTAATCATTTCTAACGTTCCTGTTTTGATCTTCAGATTGGAAGGTCTGCTGGATTTAGCTTAGGGAGTACATATACACATCGACCCCAGCAGCAGCAACAGCATTCTTCAGCAGTTAGTAACAGCACGGTCTCCTTTTCACCTGCAAATAATCAAGATCTCCTTCATTTGCACGGATCAGATATATTTCCGTCATCACATACTACATCCTACCACCAGCAGGTGTGCAATTCTGTTAATGTAAAGGAAGAATTCTTTTTACCCCTTGCATCTTAGTTTTTACTTTGCAGTTGCAAGGAATCAACCTATTGCTCTACTTTGATGTTTTTATAACTGAAGTGAAGTTTTCTACCTTTTGAGGTCGATTATTCCCAATGTATTATAAGGGATCGAACGGGCGTAAATGATTTGTAGATCAATTATTGGCCTATATGACTTATATCTCTTCTCCGATGAAGTTTTTCACACCAACGTTTCTTTGTTCTTTTTCAGTCTAGTGGCCCTCCTGGTATTGGTTTAAGACCTATGAGCTCTCCTAATTCAGCTTCTGGAATGGGTTATGACCAACTTATCCAGCAATATCAACAGCACCACGGTCAATCTCAATTCCGATTCAAAAGTATGTCTGGTGTTAATCAGTCATTTAGGGATCAGGGCCTTAAATCTATGCAGACAGCTCAATCTTCTCCCGATCCATTTGGTTTACTTGGTTTGTTAAGTGTAATAAGGCTGAGTGATCCTGATCTAGCATCCCTCGCACTGGGGATTGATTTGACCACGTTAGGTTTAAATTTGAATTCAGCAGAGAATCTTCATAAGACATTTGGCTCCCCATGGTCTGATGAGCCTGCTAAGGGTGATCCAGATTTCAATGTACCGCAGTGCTATCTTATTAAACCACCGCCTACACTACATGTGAGGTTCTTCACCTTTCATATATCCCCCTTCTAGTCTTTGTGAAACTTCCTACAGTTGTCTCAACTGATTTTTTTTTTTTTTTTTTTTTTTGTAATTGCAGCAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTCCTTCTTCAAGTTTTGTTTTCATATACATAATCCTTACTCTATCTTGGTCTGCAGCATGCCAAAAGATGAAGCTCAGTTGTATGCTGCAAATGAACTGTAAGCTCTCATTATTGACTTACTGTGCAGTTATTTTCACCAAAGTCTTGAAAATAATTTATGGATAAGGCTTTTTCCCAGGAGCTGGTGCCAACCCTTTTTATTTATTTTTTAATCTTTTGTAATAGTTACAATAGAGGCTGGTTTTATCACAAAGAACAACGATTCTGGTTCATTCGTGTCTCTAACATGGAACCACTTGTGAAGACTAACACTCACGAGCGAGGATCGTACCTCTGTTTCGACCCCCAAACATTTGAAACTGTCCGCAAGGTTTGGACTTGTCAATATCTTTCATTGAAATTATTTATACTGCTGCCTGTTGCACCGTTCCCATTGCTCATTTTGCTCATGTTACGTCCATTTGCTTCAGGATAATTTTGTCCTTCACTACGAGATGGTAGAAAAGAGACCAGCACTACCGCAACATTGATTCTTTTTACATATATAGAAAATGTAAAGGTAATTCGTGGATTTTCACTTGTAAGCCTTAGTTGTGTTTGTAGAATTCATGTTTTTGTAACTCGGTAATTGCAATCGATCGTGTAGGCCCAATCTTGTAATTTTAGTGAGCCGATTTAGTGGTTTCTTCCCTGTCATTTTACAAGATCCACAATCTTAGGTTGAACATGGTATCATTGAATTGAATCCTCGGCATACGGGTTTATTGCTTCCTTGTTTGTTTTTATGGTACAACCTGCTGTCATACAATACCAACATCTCTCCTATTAACCAACAAAGTTAAGAACCTGCTGTTGCCTGTTTGAACAACCTGCCAATCAATGTAAGCCATTCATTCTTCCAGCTTGTTTTGAAACTGTTTATTTGATCAAATTTCTGAGAACACTCCAATTAATATGAGCCACAAAACAATTATGTCCATTTATGACAGACATATC

mRNA sequence

ATGTCGGGTTTACTTAATTCATCTCTTAATGGATCAGCTTCGAATGTTCCAGATGGAGCTGGGCGATCTTTTGCTACCTCATTTTCTGGTCAATCTGGCGCAGCCTCCCCTGTTTTTCATCACTCTGGAACTATGCAAGGGTTGCATAACATTCATGGAAGCTTCAATATTCAGAACATGTCAGGTGCACTAGCTTTGAGAAATTCAACGATTAATAATGTTCCATCTGGTGGGGTGCAGCAACCTACTGGAACACTTTCCAGTGGGCGTTATGCTGCATCAAACAACCTTCCTGTTGCTCTCTCACAGTTGTCTCATGGCGGCTCTCATGGGCATTTAGGAGTTGCAAATAGAGGAGGTATAAGTGTTGTAGGAAATCCTGGATTTAGTAGCAGCACAAATGCAGTTGGTGGTTCTATCCCTGGGATTCTGTCTAGTTCTGCTGGTATTGGTAATCGAAATACTGTTCCAGGGTTGGGTGTATCTCCAATTTTGGGAAATTCAGGTCCTCGGATCACAAGTTCAATGGGAAATATGGTAAGTGGAGGCAACATAGGAAGGAGTATAACTTCTGGTGGGGGATTGTCATTACCTGGTCTTTCTTCTCGTCTAAACCTTGGTGCTAATAGTGGATCTGGAAGTTTATCTGTGCAAGGACAAAACCGTTTAATGAGTGGTGTGCTTCCACAAGGATCTCAACAGGTCATTTCTATGTTGGGTAATTCTTATCCTAGCGCCGGAGGTCCCCTTTCCCAAAATCATATGCAGAGCGTGAATAGTCTCAGTTCTCTGGGGATGTTGAATGATGTGAATGCTAATGACAATTCTCCTTTTGATATCAACGATTTCCCTCAGTTGACTAGTCGTCCAAGTTCTGCAGGAGGGCCTCAAGGGCAATTAAGCTCGCTGAGAAAACAAGGCCTTAGTCCTATTGTCCAACAAAACCAGGAGTTCAGCATTCAGAATGAAGATTTTCCAGCGTTACCTAGATTTAAAGGTGGGAATGCTGATTATGGCATGGATATGCATCAGACAGAACAACATGAAAATTCTGTGCCTATGATGCAGTCGCAGCAGTTCTCTATTGGAAGGTCTGCTGGATTTAGCTTAGGGAGTACATATACACATCGACCCCAGCAGCAGCAACAGCATTCTTCAGCAGTTAGTAACAGCACGGTCTCCTTTTCACCTGCAAATAATCAAGATCTCCTTCATTTGCACGGATCAGATATATTTCCGTCATCACATACTACATCCTACCACCAGCAGTCTAGTGGCCCTCCTGGTATTGGTTTAAGACCTATGAGCTCTCCTAATTCAGCTTCTGGAATGGGTTATGACCAACTTATCCAGCAATATCAACAGCACCACGGTCAATCTCAATTCCGATTCAAAAGTATGTCTGGTGTTAATCAGTCATTTAGGGATCAGGGCCTTAAATCTATGCAGACAGCTCAATCTTCTCCCGATCCATTTGGTTTACTTGGTTTGTTAAGTGTAATAAGGCTGAGTGATCCTGATCTAGCATCCCTCGCACTGGGGATTGATTTGACCACGTTAGGTTTAAATTTGAATTCAGCAGAGAATCTTCATAAGACATTTGGCTCCCCATGGTCTGATGAGCCTGCTAAGGGTGATCCAGATTTCAATGTACCGCAGTGCTATCTTATTAAACCACCGCCTACACTACATGTGAGCATGCCAAAAGATGAAGCTCAGTTGTATGCTGCAAATGAACTTTACAATAGAGGCTGGTTTTATCACAAAGAACAACGATTCTGGTTCATTCGTGTCTCTAACATGGAACCACTTGTGAAGACTAACACTCACGAGCGAGGATCGTACCTCTGTTTCGACCCCCAAACATTTGAAACTGTCCGCAAGGATAATTTTGTCCTTCACTACGAGATGGTAGAAAAGAGACCAGCACTACCGCAACATTGATTCTTTTTACATATATAGAAAATGTAAAGGTAATTCGTGGATTTTCACTTGTAAGCCTTAGTTGTGTTTGTAGAATTCATGTTTTTGTAACTCGGTAATTGCAATCGATCGTGTAGGCCCAATCTTGTAATTTTAGTGAGCCGATTTAGTGGTTTCTTCCCTGTCATTTTACAAGATCCACAATCTTAGGTTGAACATGGTATCATTGAATTGAATCCTCGGCATACGGGTTTATTGCTTCCTTGTTTGTTTTTATGGTACAACCTGCTGTCATACAATACCAACATCTCTCCTATTAACCAACAAAGTTAAGAACCTGCTGTTGCCTGTTTGAACAACCTGCCAATCAATGTAAGCCATTCATTCTTCCAGCTTGTTTTGAAACTGTTTATTTGATCAAATTTCTGAGAACACTCCAATTAATATGAGCCACAAAACAATTATGTCCATTTATGACAGACATATC

Coding sequence (CDS)

ATGTCGGGTTTACTTAATTCATCTCTTAATGGATCAGCTTCGAATGTTCCAGATGGAGCTGGGCGATCTTTTGCTACCTCATTTTCTGGTCAATCTGGCGCAGCCTCCCCTGTTTTTCATCACTCTGGAACTATGCAAGGGTTGCATAACATTCATGGAAGCTTCAATATTCAGAACATGTCAGGTGCACTAGCTTTGAGAAATTCAACGATTAATAATGTTCCATCTGGTGGGGTGCAGCAACCTACTGGAACACTTTCCAGTGGGCGTTATGCTGCATCAAACAACCTTCCTGTTGCTCTCTCACAGTTGTCTCATGGCGGCTCTCATGGGCATTTAGGAGTTGCAAATAGAGGAGGTATAAGTGTTGTAGGAAATCCTGGATTTAGTAGCAGCACAAATGCAGTTGGTGGTTCTATCCCTGGGATTCTGTCTAGTTCTGCTGGTATTGGTAATCGAAATACTGTTCCAGGGTTGGGTGTATCTCCAATTTTGGGAAATTCAGGTCCTCGGATCACAAGTTCAATGGGAAATATGGTAAGTGGAGGCAACATAGGAAGGAGTATAACTTCTGGTGGGGGATTGTCATTACCTGGTCTTTCTTCTCGTCTAAACCTTGGTGCTAATAGTGGATCTGGAAGTTTATCTGTGCAAGGACAAAACCGTTTAATGAGTGGTGTGCTTCCACAAGGATCTCAACAGGTCATTTCTATGTTGGGTAATTCTTATCCTAGCGCCGGAGGTCCCCTTTCCCAAAATCATATGCAGAGCGTGAATAGTCTCAGTTCTCTGGGGATGTTGAATGATGTGAATGCTAATGACAATTCTCCTTTTGATATCAACGATTTCCCTCAGTTGACTAGTCGTCCAAGTTCTGCAGGAGGGCCTCAAGGGCAATTAAGCTCGCTGAGAAAACAAGGCCTTAGTCCTATTGTCCAACAAAACCAGGAGTTCAGCATTCAGAATGAAGATTTTCCAGCGTTACCTAGATTTAAAGGTGGGAATGCTGATTATGGCATGGATATGCATCAGACAGAACAACATGAAAATTCTGTGCCTATGATGCAGTCGCAGCAGTTCTCTATTGGAAGGTCTGCTGGATTTAGCTTAGGGAGTACATATACACATCGACCCCAGCAGCAGCAACAGCATTCTTCAGCAGTTAGTAACAGCACGGTCTCCTTTTCACCTGCAAATAATCAAGATCTCCTTCATTTGCACGGATCAGATATATTTCCGTCATCACATACTACATCCTACCACCAGCAGTCTAGTGGCCCTCCTGGTATTGGTTTAAGACCTATGAGCTCTCCTAATTCAGCTTCTGGAATGGGTTATGACCAACTTATCCAGCAATATCAACAGCACCACGGTCAATCTCAATTCCGATTCAAAAGTATGTCTGGTGTTAATCAGTCATTTAGGGATCAGGGCCTTAAATCTATGCAGACAGCTCAATCTTCTCCCGATCCATTTGGTTTACTTGGTTTGTTAAGTGTAATAAGGCTGAGTGATCCTGATCTAGCATCCCTCGCACTGGGGATTGATTTGACCACGTTAGGTTTAAATTTGAATTCAGCAGAGAATCTTCATAAGACATTTGGCTCCCCATGGTCTGATGAGCCTGCTAAGGGTGATCCAGATTTCAATGTACCGCAGTGCTATCTTATTAAACCACCGCCTACACTACATGTGAGCATGCCAAAAGATGAAGCTCAGTTGTATGCTGCAAATGAACTTTACAATAGAGGCTGGTTTTATCACAAAGAACAACGATTCTGGTTCATTCGTGTCTCTAACATGGAACCACTTGTGAAGACTAACACTCACGAGCGAGGATCGTACCTCTGTTTCGACCCCCAAACATTTGAAACTGTCCGCAAGGATAATTTTGTCCTTCACTACGAGATGGTAGAAAAGAGACCAGCACTACCGCAACATTGA

Protein sequence

MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNMSGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGGISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMVSGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLGNSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQLSSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQFSIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSYHQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLKSMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSDEPAKGDPDFNVPQCYLIKPPPTLHVSMPKDEAQLYAANELYNRGWFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPALPQH

Homology

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BLAST of CmaCh20G004390 vs. ExPASy Swiss-Prot
Match: Q52JK6 (Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana OX=4100 GN=VIP2 PE=1 SV=1)

HSP 1 Score: 842.4 bits (2175), Expect = 3.4e-243
Identity = 441/607 (72.65%), Postives = 505/607 (83.20%), Query Frame = 0


Query: 60  MSGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRG 119
           M G L  RN+ INNVPS GVQQ    LS GR+   NNLP ALSQ+  G SHGH G+ +RG
Sbjct: 1   MQGTLTSRNTAINNVPSSGVQQSGNNLSGGRF-VPNNLPSALSQIPQGNSHGHSGMTSRG 60

Query: 120 GISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNM 179
           G SVVGNPG+SS+TN VGGSIPGIL + A IGNR++VPGLGVSPILGN+GPR+T+S+GN+
Sbjct: 61  GTSVVGNPGYSSNTNGVGGSIPGILPTFAAIGNRSSVPGLGVSPILGNAGPRMTNSVGNI 120

Query: 180 VSGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISML 239
           V GGNIGRSI+SG GLS+PGL+SRLN+ ANSGSG+L+VQG NRLMSGVL Q S QV+SML
Sbjct: 121 VGGGNIGRSISSGAGLSVPGLASRLNMNANSGSGNLNVQGPNRLMSGVLQQASPQVLSML 180

Query: 240 GNSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQ 299
           GNSYP AGGPLSQNH+Q++ + +S+G+LNDVN+ND SPFDINDFPQL+SRPSSAGGPQGQ
Sbjct: 181 GNSYP-AGGPLSQNHVQAIGNFNSMGLLNDVNSNDGSPFDINDFPQLSSRPSSAGGPQGQ 240

Query: 300 LSSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQ-HENSVPMMQSQ 359
           L SLRKQGLSPIVQQNQEFSIQNEDFPALP FKGGNADY MD HQ EQ H+N++ MMQ Q
Sbjct: 241 LGSLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDPHQKEQLHDNTLSMMQQQ 300

Query: 360 QFSIGRSAGFSLGSTY-THRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHT 419
            FS+GRSAGF+LG TY ++RPQQQ QH+ +VS+  VSFS  NNQDLL LHGSD+F SSH 
Sbjct: 301 HFSMGRSAGFNLGGTYSSNRPQQQLQHAPSVSSGGVSFSNINNQDLLSLHGSDVFQSSH- 360

Query: 420 TSYHQQSSGPPGIGLRPMSSPNSASGMG-YDQLIQQYQQHHGQSQFRFKSMSGVNQSFRD 479
           +SY QQ  GPPGIGLRP++S  + SG+G YDQLIQQYQQH GQSQFR + MS + Q FRD
Sbjct: 361 SSYQQQGGGPPGIGLRPLNSSGTVSGIGSYDQLIQQYQQHQGQSQFRLQQMSTLGQPFRD 420

Query: 480 QGLKSMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGS 539
           Q LKSMQ +Q +PDPFG+LGLLSVIR+SDPDL SLALGIDLTTLGLNLNSAENL+KTFGS
Sbjct: 421 QSLKSMQ-SQVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLYKTFGS 480

Query: 540 PWSDEPAKGDPDFNVPQCYLIKPPPTLH----------------VSMPKDEAQLYAANEL 599
           PWSDEPAKGDP+F VPQCY  K PP L+                 SMPKDEAQLYAANEL
Sbjct: 481 PWSDEPAKGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANEL 540

Query: 600 YNRGWFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEK 648
           YNRGWFYH+E R WF+RV+NMEPLVKTN +ERGSY+CFDP T+ET+ KDNFVLH EM+EK
Sbjct: 541 YNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEK 600

[Close]

BLAST of CmaCh20G004390 vs. ExPASy Swiss-Prot
Match: Q9FPW4 (Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana OX=3702 GN=VIP2 PE=1 SV=2)

HSP 1 Score: 746.9 bits (1927), Expect = 1.9e-214
Identity = 418/662 (63.14%), Postives = 501/662 (75.68%), Query Frame = 0


Query: 5   LNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNMSGAL 64
           L+SSLNGSASN+PDG+GRSF  S+SGQSGA SP FHH+G +QGLHNIHG++N+ NM G L
Sbjct: 4   LHSSLNGSASNLPDGSGRSFTASYSGQSGAPSPSFHHTGNLQGLHNIHGNYNVGNMQGTL 63

Query: 65  ALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGGISVV 124
             RNS++N++PS GVQQP G+ SSGR+ ASNNLPV LSQLSHG SHGH G+ NR G++VV
Sbjct: 64  TSRNSSMNSIPSAGVQQPNGSFSSGRF-ASNNLPVNLSQLSHGSSHGHSGIPNR-GLNVV 123

Query: 125 GNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMVSGGN 184
           GNPGFSS+ N VGGSIPGILS+SAG+ NRN+VPG+G+S +LGNSGPRIT+SMGNMV GGN
Sbjct: 124 GNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGGGN 183

Query: 185 IGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLGNSYP 244
           +GR+I+S GGLS+PGLSSRLNL ANSGSG L+VQGQNR+M GVLPQGS QV+SMLGNSY 
Sbjct: 184 LGRNISS-GGLSIPGLSSRLNLAANSGSG-LNVQGQNRMMGGVLPQGS-QVMSMLGNSYH 243

Query: 245 SAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDI-NDFPQLTSRPSSAGGPQGQLSSL 304
           + GGPLSQNH+QSVN++    ML+D + ND+S FDI NDFPQLTSRP SAGG QG L SL
Sbjct: 244 TGGGPLSQNHVQSVNNM----MLSD-HPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSL 303

Query: 305 RKQGLS-PIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQ-HENSVPMMQSQQFS 364
           RKQGL  P+VQQNQEFSIQNEDFPALP +KGGN++Y MD+HQ EQ H+N++ MM SQ FS
Sbjct: 304 RKQGLGVPLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNFS 363

Query: 365 IGRSAGFSLGSTY-THRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY 424
           +GRS GF+LG+TY +HRPQQQ QH+S+                                 
Sbjct: 364 MGRSGGFNLGATYSSHRPQQQPQHTSS--------------------------------- 423

Query: 425 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK 484
              + G  G+GLRP+SSPN+ S +GYDQLIQQYQQH  QSQF  + MS +NQ FRD  +K
Sbjct: 424 ---TGGLQGLGLRPLSSPNAVSSIGYDQLIQQYQQHQNQSQFPVQQMSSINQ-FRDSEMK 483

Query: 485 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 544
           S    QS  DPF LLGLL V+  S+P+L SLALGIDLTTLGL+LNS  NL+KTF SPW++
Sbjct: 484 S---TQSEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTN 543

Query: 545 EPAKGDPDFNVPQCYLIKPPPTL----------------HVSMPKDEAQLYAANELYNRG 604
           EPAK + +F VP CY    PP L                  SMPKDEAQLYAA+ELY RG
Sbjct: 544 EPAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERG 603

Query: 605 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 647
           WFYHKE R WF RV   EPLV+  T+ERG+Y   DP +F+TVRK++FV+ YE++EKRP+L
Sbjct: 604 WFYHKELRVWFFRVG--EPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSL 613

[Close]

BLAST of CmaCh20G004390 vs. ExPASy Swiss-Prot
Match: Q8C5L3 (CCR4-NOT transcription complex subunit 2 OS=Mus musculus OX=10090 GN=Cnot2 PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 1.0e-29
Identity = 158/578 (27.34%), Postives = 231/578 (39.97%), Query Frame = 0


Query: 101 LSQLSHGGSHGHLGVANRGGISVVGNP--GFSSSTNAVGGSIPGILSSSAGIGNRNTVPG 160
           L+  S  G     G +  G  S +G P  G S++T  +  S+       + +     VP 
Sbjct: 59  LASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPT 118

Query: 161 LGVSPILGNSGPRITSSMGNMVSGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQ 220
           + +      S   +  +  NM++   +G+ I         G+ SR N  ++SG GS    
Sbjct: 119 MSLHTPPSPSRGILPMNPRNMMNHSQVGQGI---------GIPSRTNSMSSSGLGS---- 178

Query: 221 GQNRLMSGVLPQGSQQVISMLGNSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDN-SP 280
             NR    ++    QQ           +G  +++N    +N+  S  + N  + ++N + 
Sbjct: 179 -PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTG 238

Query: 281 FDINDFPQLT--SRPSSAGGPQGQLSSLRKQG------LSPIVQQNQEFSIQNEDFPALP 340
            D++DFP L   +R   +G P   ++ L  +         P  +Q+Q+FSI NEDFPALP
Sbjct: 239 LDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALP 298

Query: 341 RFKGGNADYGMDMHQTEQHENSVPMMQSQQFSIGRSAGFSLGSTYTHRPQQQQQHSSAVS 400
                                                    GS+Y           S +S
Sbjct: 299 -----------------------------------------GSSYKDPTSSNDDSKSNLS 358

Query: 401 NSTVSFSPANNQDLLHLHGSDIFPSSHTTSYHQQSSGPPGIGLRPMSS-PNSASGMGYDQ 460
            S  + S  +            FP   +++    +    GI + P     N   GM  DQ
Sbjct: 359 TSGKTTSSTDGPK---------FPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQ 418

Query: 461 LIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLKSMQTAQSSPDPFGLLGLLSVIRL--SDP 520
                                                      FG++GLL+ IR   +DP
Sbjct: 419 -------------------------------------------FGMIGLLTFIRAAETDP 478

Query: 521 DLASLALGIDLTTLGLNLNSAENLHKTFGSPWSDEPAK-GDPDFNVPQCYL----IKPPP 580
            +  LALG DLTTLGLNLNS ENL+  F SPW+  P +  D DF+VP  YL    I+   
Sbjct: 479 GMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKL 528

Query: 581 T--------------LHVSMPKDEAQLYAANELYNRGWFYHKEQRFWFIRVSNMEPLVKT 640
                          L+     D  QL AA EL+NR W YHKE+R W  R   MEP +KT
Sbjct: 539 AAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKT 528

Query: 641 NTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPALP 646
           NT+ERG+Y  FD   +  V K+ F L Y+ +E+RP LP
Sbjct: 599 NTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528

[Close]

BLAST of CmaCh20G004390 vs. ExPASy Swiss-Prot
Match: Q9NZN8 (CCR4-NOT transcription complex subunit 2 OS=Homo sapiens OX=9606 GN=CNOT2 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.2e-29
Identity = 157/578 (27.16%), Postives = 231/578 (39.97%), Query Frame = 0


Query: 101 LSQLSHGGSHGHLGVANRGGISVVGNP--GFSSSTNAVGGSIPGILSSSAGIGNRNTVPG 160
           L+  S  G     G +  G  S +G P  G S++T  +  S+       + +     VP 
Sbjct: 59  LASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPT 118

Query: 161 LGVSPILGNSGPRITSSMGNMVSGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQ 220
           + +      S   +  +  NM++   +G+ I         G+ SR N  ++SG GS    
Sbjct: 119 MSLHTPPSPSRGILPMNPRNMMNHSQVGQGI---------GIPSRTNSMSSSGLGS---- 178

Query: 221 GQNRLMSGVLPQGSQQVISMLGNSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDN-SP 280
             NR    ++    QQ           +G  +++N    +N+  S  + N  + ++N + 
Sbjct: 179 -PNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTG 238

Query: 281 FDINDFPQLT--SRPSSAGGPQGQLSSLRKQG------LSPIVQQNQEFSIQNEDFPALP 340
            D++DFP L   +R   +G P   ++ L  +         P  +Q+Q+FSI NEDFPALP
Sbjct: 239 LDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALP 298

Query: 341 RFKGGNADYGMDMHQTEQHENSVPMMQSQQFSIGRSAGFSLGSTYTHRPQQQQQHSSAVS 400
                                                    GS+Y           S ++
Sbjct: 299 -----------------------------------------GSSYKDPTSSNDDSKSNLN 358

Query: 401 NSTVSFSPANNQDLLHLHGSDIFPSSHTTSYHQQSSGPPGIGLRPMSS-PNSASGMGYDQ 460
            S  + S  +            FP   +++    +    GI + P     N   GM  DQ
Sbjct: 359 TSGKTTSSTDGPK---------FPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQ 418

Query: 461 LIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLKSMQTAQSSPDPFGLLGLLSVIRL--SDP 520
                                                      FG++GLL+ IR   +DP
Sbjct: 419 -------------------------------------------FGMIGLLTFIRAAETDP 478

Query: 521 DLASLALGIDLTTLGLNLNSAENLHKTFGSPWSDEPAK-GDPDFNVPQCYL----IKPPP 580
            +  LALG DLTTLGLNLNS ENL+  F SPW+  P +  D DF+VP  YL    I+   
Sbjct: 479 GMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKL 528

Query: 581 T--------------LHVSMPKDEAQLYAANELYNRGWFYHKEQRFWFIRVSNMEPLVKT 640
                          L+     D  QL AA EL+NR W YHKE+R W  R   MEP +KT
Sbjct: 539 AAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKT 528

Query: 641 NTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPALP 646
           NT+ERG+Y  FD   +  V K+ F L Y+ +E+RP LP
Sbjct: 599 NTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528

[Close]

BLAST of CmaCh20G004390 vs. ExPASy Swiss-Prot
Match: Q94547 (Regulator of gene activity OS=Drosophila melanogaster OX=7227 GN=Rga PE=1 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 9.5e-20
Identity = 141/536 (26.31%), Postives = 221/536 (41.23%), Query Frame = 0


Query: 198 PGLSSRLNLGA---NSGSGSLSVQGQNRLMSGVLPQG-SQQVISMLGNSYPS-------- 257
           P  +++L++G    +SG+ + ++ GQ + +     QG     +S +GN   +        
Sbjct: 74  PNRNAQLSVGGPAISSGNRNANLFGQRQFVERRAMQGLGSGPMSNMGNFMQTGRGGYGTG 133

Query: 258 --AGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQLSSL 317
              GGPL+  H+         G     + +  +  D  +FP LT+          Q + L
Sbjct: 134 GGGGGPLNNFHV--------FGGGGGSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPL 193

Query: 318 RKQGLSPI-------------VQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHEN 377
           +  G  P                +  EF++ NEDFPALP               ++   N
Sbjct: 194 QPPGSKPYGNFFTSFGMVKQPTSEQSEFTMSNEDFPALP-----------GTQNSDGTTN 253

Query: 378 SVPMMQSQQFSIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDL-----LH 437
           +V        S+  + G    ST  H    ++  +S V + + S S  +N  +     L 
Sbjct: 254 AVG-------SVAGTGGSGGASTENHLDGTEKPMNSIVVSGSASGSSGSNVGVVGGNGLG 313

Query: 438 LHGSDIFPSSHTTSYHQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHG----QSQ 497
             GS I   +        SSG  G+G       N+ASG+     +     + G     S 
Sbjct: 314 AVGSGIGGLAVGGGGGAGSSGGGGVG------GNAASGVVGGSHVGLVGSNSGIGGVNSV 373

Query: 498 FRFKSMSGV---------------------NQSFRDQGLKSMQTAQSSPD---------- 557
               +M GV                     + S  D+ +KS    Q+SPD          
Sbjct: 374 PNSNAMMGVGGGLGSGSGSSGSGAGGEHLNDNSSNDKLVKS--GVQTSPDGKVTNIPATM 433

Query: 558 ---PFGLLGLLSVIRL--SDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSDEPAKG 617
               FG++GLL+ IR   +DP+L +L+LG DLT LGLNLNS E+LH TF  P+  +P + 
Sbjct: 434 VNNQFGMVGLLTFIRAAETDPNLVTLSLGTDLTGLGLNLNSQESLHTTFAGPFVAQPCRA 493

Query: 618 -DPDFNVPQCYLIKPPPTLHVSMP------------------KDEAQLYAANELYNRGWF 643
            D +FNVP  YLI       ++ P                   D  QL AA EL++R W 
Sbjct: 494 QDVEFNVPPEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWR 553

[Close]

BLAST of CmaCh20G004390 vs. ExPASy TrEMBL
Match: A0A6J1FYL0 (probable NOT transcription complex subunit VIP2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448793 PE=3 SV=1)

HSP 1 Score: 1237.6 bits (3201), Expect = 0.0e+00
Identity = 640/663 (96.53%), Postives = 644/663 (97.13%), Query Frame = 0


Query: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60
           MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM
Sbjct: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60

Query: 61  SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120
           SGALA RNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG
Sbjct: 61  SGALASRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120

Query: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV 180
           ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRIT+SMGNMV
Sbjct: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITTSMGNMV 180

Query: 181 SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240
           SGGNIGRSITSGGGLSLPGL+SRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG
Sbjct: 181 SGGNIGRSITSGGGLSLPGLASRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240

Query: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300
           NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL
Sbjct: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300

Query: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360
           SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF
Sbjct: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360

Query: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY 420
           SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHT SY
Sbjct: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTASY 420

Query: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK 480
           HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF+SMSGVNQSFRDQG+K
Sbjct: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFQSMSGVNQSFRDQGIK 480

Query: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540
           SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD
Sbjct: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540

Query: 541 EPAKGDPDFNVPQCYLIKPPPTLH----------------VSMPKDEAQLYAANELYNRG 600
           EPAKGDPDFNVPQCYLIKPPPTLH                 SMPKDEAQLYAANELYNRG
Sbjct: 541 EPAKGDPDFNVPQCYLIKPPPTLHQGYFSKFTLETLFYIFFSMPKDEAQLYAANELYNRG 600

Query: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 648
           WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL
Sbjct: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 660

[Close]

BLAST of CmaCh20G004390 vs. ExPASy TrEMBL
Match: A0A6J1FU31 (probable NOT transcription complex subunit VIP2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448793 PE=3 SV=1)

HSP 1 Score: 1223.8 bits (3165), Expect = 0.0e+00
Identity = 636/663 (95.93%), Postives = 640/663 (96.53%), Query Frame = 0


Query: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60
           MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHS    GLHNIHGSFNIQNM
Sbjct: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHS----GLHNIHGSFNIQNM 60

Query: 61  SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120
           SGALA RNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG
Sbjct: 61  SGALASRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120

Query: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV 180
           ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRIT+SMGNMV
Sbjct: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITTSMGNMV 180

Query: 181 SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240
           SGGNIGRSITSGGGLSLPGL+SRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG
Sbjct: 181 SGGNIGRSITSGGGLSLPGLASRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240

Query: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300
           NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL
Sbjct: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300

Query: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360
           SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF
Sbjct: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360

Query: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY 420
           SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHT SY
Sbjct: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTASY 420

Query: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK 480
           HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF+SMSGVNQSFRDQG+K
Sbjct: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFQSMSGVNQSFRDQGIK 480

Query: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540
           SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD
Sbjct: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540

Query: 541 EPAKGDPDFNVPQCYLIKPPPTLH----------------VSMPKDEAQLYAANELYNRG 600
           EPAKGDPDFNVPQCYLIKPPPTLH                 SMPKDEAQLYAANELYNRG
Sbjct: 541 EPAKGDPDFNVPQCYLIKPPPTLHQGYFSKFTLETLFYIFFSMPKDEAQLYAANELYNRG 600

Query: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 648
           WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL
Sbjct: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 659

[Close]

BLAST of CmaCh20G004390 vs. ExPASy TrEMBL
Match: A0A6J1FVE2 (probable NOT transcription complex subunit VIP2 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111448793 PE=3 SV=1)

HSP 1 Score: 1158.3 bits (2995), Expect = 0.0e+00
Identity = 596/619 (96.28%), Postives = 600/619 (96.93%), Query Frame = 0


Query: 45  MQGLHNIHGSFNIQNMSGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQL 104
           MQGLHNIHGSFNIQNMSGALA RNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQL
Sbjct: 1   MQGLHNIHGSFNIQNMSGALASRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQL 60

Query: 105 SHGGSHGHLGVANRGGISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPI 164
           SHGGSHGHLGVANRGGISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPI
Sbjct: 61  SHGGSHGHLGVANRGGISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPI 120

Query: 165 LGNSGPRITSSMGNMVSGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLM 224
           LGNSGPRIT+SMGNMVSGGNIGRSITSGGGLSLPGL+SRLNLGANSGSGSLSVQGQNRLM
Sbjct: 121 LGNSGPRITTSMGNMVSGGNIGRSITSGGGLSLPGLASRLNLGANSGSGSLSVQGQNRLM 180

Query: 225 SGVLPQGSQQVISMLGNSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFP 284
           SGVLPQGSQQVISMLGNSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFP
Sbjct: 181 SGVLPQGSQQVISMLGNSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFP 240

Query: 285 QLTSRPSSAGGPQGQLSSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQ 344
           QLTSRPSSAGGPQGQLSSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQ
Sbjct: 241 QLTSRPSSAGGPQGQLSSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQ 300

Query: 345 TEQHENSVPMMQSQQFSIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLL 404
           TEQHENSVPMMQSQQFSIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLL
Sbjct: 301 TEQHENSVPMMQSQQFSIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLL 360

Query: 405 HLHGSDIFPSSHTTSYHQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF 464
           HLHGSDIFPSSHT SYHQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF
Sbjct: 361 HLHGSDIFPSSHTASYHQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF 420

Query: 465 KSMSGVNQSFRDQGLKSMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNL 524
           +SMSGVNQSFRDQG+KSMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNL
Sbjct: 421 QSMSGVNQSFRDQGIKSMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNL 480

Query: 525 NSAENLHKTFGSPWSDEPAKGDPDFNVPQCYLIKPPPTLH----------------VSMP 584
           NSAENLHKTFGSPWSDEPAKGDPDFNVPQCYLIKPPPTLH                 SMP
Sbjct: 481 NSAENLHKTFGSPWSDEPAKGDPDFNVPQCYLIKPPPTLHQGYFSKFTLETLFYIFFSMP 540

Query: 585 KDEAQLYAANELYNRGWFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRK 644
           KDEAQLYAANELYNRGWFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRK
Sbjct: 541 KDEAQLYAANELYNRGWFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRK 600

Query: 645 DNFVLHYEMVEKRPALPQH 648
           DNFVLHYEMVEKRPALPQH
Sbjct: 601 DNFVLHYEMVEKRPALPQH 619

[Close]

BLAST of CmaCh20G004390 vs. ExPASy TrEMBL
Match: A0A6J1G5Z5 (probable NOT transcription complex subunit VIP2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451093 PE=3 SV=1)

HSP 1 Score: 1151.3 bits (2977), Expect = 0.0e+00
Identity = 595/663 (89.74%), Postives = 621/663 (93.67%), Query Frame = 0


Query: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60
           MSGLLNSSLNGSASN+PDGAGRSFATSFS QSGAASPVFHHSGT+QGLHNIHGSFNIQNM
Sbjct: 1   MSGLLNSSLNGSASNIPDGAGRSFATSFSSQSGAASPVFHHSGTIQGLHNIHGSFNIQNM 60

Query: 61  SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120
           SGAL  RNSTINNVPSGGVQQPTGTLSSGR+ ASNNLPVALSQLSH  SHGH GVANRG 
Sbjct: 61  SGALTSRNSTINNVPSGGVQQPTGTLSSGRF-ASNNLPVALSQLSHSSSHGHSGVANRGV 120

Query: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV 180
           +SVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRN VPGLG SPILGN GPRITSSMGNMV
Sbjct: 121 MSVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNAVPGLGGSPILGNVGPRITSSMGNMV 180

Query: 181 SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240
           SGGNIGRSIT+GGGLSLPGL+SRLNLGAN+GSGSLSVQGQNRLMSG LPQGSQQVISMLG
Sbjct: 181 SGGNIGRSITTGGGLSLPGLASRLNLGANNGSGSLSVQGQNRLMSGALPQGSQQVISMLG 240

Query: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300
           NSYPSAGGPLSQ+HMQSVNSLSSLGMLNDV +NDNSPFDINDFPQL+SRPSSAGG QGQL
Sbjct: 241 NSYPSAGGPLSQSHMQSVNSLSSLGMLNDVISNDNSPFDINDFPQLSSRPSSAGGAQGQL 300

Query: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360
           SSLRKQGLSPI QQN EFSIQNEDFPALPRFKGGNADYGMD+HQT+QHENS+PMMQSQQF
Sbjct: 301 SSLRKQGLSPIAQQNHEFSIQNEDFPALPRFKGGNADYGMDIHQTDQHENSMPMMQSQQF 360

Query: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY 420
           SIGRSAGF+LGSTY+HRPQQQQQHS AVSNSTVSFSPANNQDLLHLHGSD+FPSSH  SY
Sbjct: 361 SIGRSAGFNLGSTYSHRPQQQQQHSPAVSNSTVSFSPANNQDLLHLHGSDMFPSSHAASY 420

Query: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK 480
           HQQS GPPGIGLRP+SSP+S SGMGYDQLIQQYQQHHGQSQFR + +SGV+QSFRDQGLK
Sbjct: 421 HQQSIGPPGIGLRPLSSPSSGSGMGYDQLIQQYQQHHGQSQFRLQPLSGVSQSFRDQGLK 480

Query: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540
            MQ+AQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNS++NLHKTFGSPWSD
Sbjct: 481 YMQSAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSSDNLHKTFGSPWSD 540

Query: 541 EPAKGDPDFNVPQCYLIKPPPTLH----------------VSMPKDEAQLYAANELYNRG 600
           EPAKGDPDFNVPQCYLIKPPPTLH                 SMPKDEAQLYA+NELYNRG
Sbjct: 541 EPAKGDPDFNVPQCYLIKPPPTLHQGYFSKFTLETLFYIFFSMPKDEAQLYASNELYNRG 600

Query: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 648
           WFYHKEQRFWFIRVSNMEPLVKTNT+ERGSYLC DPQTFETVRKDNFVLHYEMVEKRPAL
Sbjct: 601 WFYHKEQRFWFIRVSNMEPLVKTNTYERGSYLCLDPQTFETVRKDNFVLHYEMVEKRPAL 660

[Close]

BLAST of CmaCh20G004390 vs. ExPASy TrEMBL
Match: A0A6J1G5I6 (probable NOT transcription complex subunit VIP2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451091 PE=3 SV=1)

HSP 1 Score: 1146.3 bits (2964), Expect = 0.0e+00
Identity = 588/663 (88.69%), Postives = 620/663 (93.51%), Query Frame = 0


Query: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60
           MSGLLNSS+NGSASN+PDG GRSFA SFSGQSGAASPVFHHSGT+QGLHNIHG+FN+QNM
Sbjct: 1   MSGLLNSSVNGSASNLPDGTGRSFANSFSGQSGAASPVFHHSGTIQGLHNIHGNFNLQNM 60

Query: 61  SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120
           SGAL  RNSTINNVPSGGVQQPTGT+SSGR+ ASNNLPVALSQLSHG SHGH GV NRGG
Sbjct: 61  SGALTSRNSTINNVPSGGVQQPTGTISSGRF-ASNNLPVALSQLSHGSSHGHSGVTNRGG 120

Query: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV 180
           ISVVGNPGFSSSTNAVGGSIPGILS+SA IGNRN VPGLGVSPILGN+GPRITSSMGNMV
Sbjct: 121 ISVVGNPGFSSSTNAVGGSIPGILSTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMV 180

Query: 181 SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240
           SGGNIGRSIT+GGGLSLPGL+SRLNLGANSGSGSL+VQGQNRLMSGVLPQGSQQVISML 
Sbjct: 181 SGGNIGRSITTGGGLSLPGLASRLNLGANSGSGSLTVQGQNRLMSGVLPQGSQQVISMLS 240

Query: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300
           NSYPSAGGPLSQNH+Q+VNSL+SLGMLNDVN++DNSPFDINDFPQLTSRPSSAGGPQGQL
Sbjct: 241 NSYPSAGGPLSQNHIQNVNSLNSLGMLNDVNSSDNSPFDINDFPQLTSRPSSAGGPQGQL 300

Query: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360
           SSLRKQGLSPIVQQNQEFSIQ+EDFPAL RFKGGN DYGMD+HQ +QHENSVP+MQSQQF
Sbjct: 301 SSLRKQGLSPIVQQNQEFSIQSEDFPALSRFKGGNVDYGMDIHQKDQHENSVPIMQSQQF 360

Query: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY 420
           SIGRSAGF+LGSTY+HRPQQQQQHS AVSNSTVSF PANNQDLLHLHGSDIFPSSH  SY
Sbjct: 361 SIGRSAGFNLGSTYSHRPQQQQQHSPAVSNSTVSFPPANNQDLLHLHGSDIFPSSHAASY 420

Query: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK 480
           HQQSSGPPGIGLRP+SSPNS SGMGYDQLIQQYQQHH Q QFR + MSGV+QSFRDQG+K
Sbjct: 421 HQQSSGPPGIGLRPLSSPNSVSGMGYDQLIQQYQQHHSQPQFRLQHMSGVSQSFRDQGMK 480

Query: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540
           SMQ AQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSA+NLHKTFGSPWSD
Sbjct: 481 SMQAAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSADNLHKTFGSPWSD 540

Query: 541 EPAKGDPDFNVPQCYLIKPPPTLH----------------VSMPKDEAQLYAANELYNRG 600
           EPAKGDPDFNVPQCYLIKPPP+LH                 SMPKDEAQLYAANELYNRG
Sbjct: 541 EPAKGDPDFNVPQCYLIKPPPSLHQGYFSKFTLETLFYIFFSMPKDEAQLYAANELYNRG 600

Query: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 648
           WFYHKE RFWFIRVSNMEPLVKT+++ERGSYLCFDP TFETVRKDNFVLHYEMVEKRPAL
Sbjct: 601 WFYHKEHRFWFIRVSNMEPLVKTSSYERGSYLCFDPHTFETVRKDNFVLHYEMVEKRPAL 660

[Close]

BLAST of CmaCh20G004390 vs. NCBI nr
Match: XP_022944310.1 (probable NOT transcription complex subunit VIP2 isoform X1 [Cucurbita moschata] >XP_023511946.1 probable NOT transcription complex subunit VIP2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1237.6 bits (3201), Expect = 0.0e+00
Identity = 640/663 (96.53%), Postives = 644/663 (97.13%), Query Frame = 0


Query: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60
           MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM
Sbjct: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60

Query: 61  SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120
           SGALA RNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG
Sbjct: 61  SGALASRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120

Query: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV 180
           ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRIT+SMGNMV
Sbjct: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITTSMGNMV 180

Query: 181 SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240
           SGGNIGRSITSGGGLSLPGL+SRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG
Sbjct: 181 SGGNIGRSITSGGGLSLPGLASRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240

Query: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300
           NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL
Sbjct: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300

Query: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360
           SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF
Sbjct: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360

Query: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY 420
           SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHT SY
Sbjct: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTASY 420

Query: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK 480
           HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF+SMSGVNQSFRDQG+K
Sbjct: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFQSMSGVNQSFRDQGIK 480

Query: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540
           SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD
Sbjct: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540

Query: 541 EPAKGDPDFNVPQCYLIKPPPTLH----------------VSMPKDEAQLYAANELYNRG 600
           EPAKGDPDFNVPQCYLIKPPPTLH                 SMPKDEAQLYAANELYNRG
Sbjct: 541 EPAKGDPDFNVPQCYLIKPPPTLHQGYFSKFTLETLFYIFFSMPKDEAQLYAANELYNRG 600

Query: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 648
           WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL
Sbjct: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 660

[Close]

BLAST of CmaCh20G004390 vs. NCBI nr
Match: KAG6570737.1 (putative NOT transcription complex subunit VIP2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1234.9 bits (3194), Expect = 0.0e+00
Identity = 638/663 (96.23%), Postives = 643/663 (96.98%), Query Frame = 0


Query: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60
           MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM
Sbjct: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60

Query: 61  SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120
           SGALA RNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG
Sbjct: 61  SGALASRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120

Query: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV 180
           ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRIT+SMGNMV
Sbjct: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITTSMGNMV 180

Query: 181 SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240
           SGGNIGRSITSGGGLSLPGL+SRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG
Sbjct: 181 SGGNIGRSITSGGGLSLPGLASRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240

Query: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300
           NSYPSAGGP+SQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL
Sbjct: 241 NSYPSAGGPISQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300

Query: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360
           SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF
Sbjct: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360

Query: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY 420
           SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHT SY
Sbjct: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTASY 420

Query: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK 480
           HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF+SMSGVNQSFRDQG+K
Sbjct: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFQSMSGVNQSFRDQGIK 480

Query: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540
            MQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD
Sbjct: 481 PMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540

Query: 541 EPAKGDPDFNVPQCYLIKPPPTLH----------------VSMPKDEAQLYAANELYNRG 600
           EPAKGDPDFNVPQCYLIKPPPTLH                 SMPKDEAQLYAANELYNRG
Sbjct: 541 EPAKGDPDFNVPQCYLIKPPPTLHQGYFSKFTLETLFYIFFSMPKDEAQLYAANELYNRG 600

Query: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 648
           WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL
Sbjct: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 660

[Close]

BLAST of CmaCh20G004390 vs. NCBI nr
Match: XP_022944311.1 (probable NOT transcription complex subunit VIP2 isoform X2 [Cucurbita moschata] >XP_023511947.1 probable NOT transcription complex subunit VIP2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1223.8 bits (3165), Expect = 0.0e+00
Identity = 636/663 (95.93%), Postives = 640/663 (96.53%), Query Frame = 0


Query: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60
           MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHS    GLHNIHGSFNIQNM
Sbjct: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHS----GLHNIHGSFNIQNM 60

Query: 61  SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120
           SGALA RNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG
Sbjct: 61  SGALASRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120

Query: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV 180
           ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRIT+SMGNMV
Sbjct: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITTSMGNMV 180

Query: 181 SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240
           SGGNIGRSITSGGGLSLPGL+SRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG
Sbjct: 181 SGGNIGRSITSGGGLSLPGLASRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240

Query: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300
           NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL
Sbjct: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300

Query: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360
           SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF
Sbjct: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360

Query: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY 420
           SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHT SY
Sbjct: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTASY 420

Query: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK 480
           HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF+SMSGVNQSFRDQG+K
Sbjct: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFQSMSGVNQSFRDQGIK 480

Query: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540
           SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD
Sbjct: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540

Query: 541 EPAKGDPDFNVPQCYLIKPPPTLH----------------VSMPKDEAQLYAANELYNRG 600
           EPAKGDPDFNVPQCYLIKPPPTLH                 SMPKDEAQLYAANELYNRG
Sbjct: 541 EPAKGDPDFNVPQCYLIKPPPTLHQGYFSKFTLETLFYIFFSMPKDEAQLYAANELYNRG 600

Query: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 648
           WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL
Sbjct: 601 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 659

[Close]

BLAST of CmaCh20G004390 vs. NCBI nr
Match: XP_022944312.1 (probable NOT transcription complex subunit VIP2 isoform X3 [Cucurbita moschata] >XP_023511948.1 probable NOT transcription complex subunit VIP2 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1158.3 bits (2995), Expect = 0.0e+00
Identity = 596/619 (96.28%), Postives = 600/619 (96.93%), Query Frame = 0


Query: 45  MQGLHNIHGSFNIQNMSGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQL 104
           MQGLHNIHGSFNIQNMSGALA RNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQL
Sbjct: 1   MQGLHNIHGSFNIQNMSGALASRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQL 60

Query: 105 SHGGSHGHLGVANRGGISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPI 164
           SHGGSHGHLGVANRGGISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPI
Sbjct: 61  SHGGSHGHLGVANRGGISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPI 120

Query: 165 LGNSGPRITSSMGNMVSGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLM 224
           LGNSGPRIT+SMGNMVSGGNIGRSITSGGGLSLPGL+SRLNLGANSGSGSLSVQGQNRLM
Sbjct: 121 LGNSGPRITTSMGNMVSGGNIGRSITSGGGLSLPGLASRLNLGANSGSGSLSVQGQNRLM 180

Query: 225 SGVLPQGSQQVISMLGNSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFP 284
           SGVLPQGSQQVISMLGNSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFP
Sbjct: 181 SGVLPQGSQQVISMLGNSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFP 240

Query: 285 QLTSRPSSAGGPQGQLSSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQ 344
           QLTSRPSSAGGPQGQLSSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQ
Sbjct: 241 QLTSRPSSAGGPQGQLSSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQ 300

Query: 345 TEQHENSVPMMQSQQFSIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLL 404
           TEQHENSVPMMQSQQFSIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLL
Sbjct: 301 TEQHENSVPMMQSQQFSIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLL 360

Query: 405 HLHGSDIFPSSHTTSYHQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF 464
           HLHGSDIFPSSHT SYHQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF
Sbjct: 361 HLHGSDIFPSSHTASYHQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRF 420

Query: 465 KSMSGVNQSFRDQGLKSMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNL 524
           +SMSGVNQSFRDQG+KSMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNL
Sbjct: 421 QSMSGVNQSFRDQGIKSMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNL 480

Query: 525 NSAENLHKTFGSPWSDEPAKGDPDFNVPQCYLIKPPPTLH----------------VSMP 584
           NSAENLHKTFGSPWSDEPAKGDPDFNVPQCYLIKPPPTLH                 SMP
Sbjct: 481 NSAENLHKTFGSPWSDEPAKGDPDFNVPQCYLIKPPPTLHQGYFSKFTLETLFYIFFSMP 540

Query: 585 KDEAQLYAANELYNRGWFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRK 644
           KDEAQLYAANELYNRGWFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRK
Sbjct: 541 KDEAQLYAANELYNRGWFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRK 600

Query: 645 DNFVLHYEMVEKRPALPQH 648
           DNFVLHYEMVEKRPALPQH
Sbjct: 601 DNFVLHYEMVEKRPALPQH 619

[Close]

BLAST of CmaCh20G004390 vs. NCBI nr
Match: XP_023532184.1 (probable NOT transcription complex subunit VIP2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1158.3 bits (2995), Expect = 0.0e+00
Identity = 596/662 (90.03%), Postives = 624/662 (94.26%), Query Frame = 0


Query: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60
           MSGLLNSSLNGSASN+PDGAGRSFATSFS QSGAASPVFHHSGT+QGLHNIHGSFNIQNM
Sbjct: 1   MSGLLNSSLNGSASNIPDGAGRSFATSFSSQSGAASPVFHHSGTIQGLHNIHGSFNIQNM 60

Query: 61  SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120
           SGAL  RNSTINNVPSGGVQQPTGTLSSGR+ ASNNLPVALSQLSH  SHGH GVANRGG
Sbjct: 61  SGALTSRNSTINNVPSGGVQQPTGTLSSGRF-ASNNLPVALSQLSHSSSHGHSGVANRGG 120

Query: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV 180
           +SVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRN VPGLG SPILGN GPR+TSSMGNMV
Sbjct: 121 MSVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNAVPGLGGSPILGNVGPRLTSSMGNMV 180

Query: 181 SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240
           SGGNIGRSIT+GGGLSLPGL+SRLNLGAN+GSGSLSVQGQNRLMSG LPQGSQQVISMLG
Sbjct: 181 SGGNIGRSITTGGGLSLPGLASRLNLGANNGSGSLSVQGQNRLMSGALPQGSQQVISMLG 240

Query: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL 300
           NSYPSAGGPLSQNH+QSVNSL+SLGMLNDV +NDNSPFDINDFPQL+SRPSSAGG QGQL
Sbjct: 241 NSYPSAGGPLSQNHVQSVNSLNSLGMLNDVISNDNSPFDINDFPQLSSRPSSAGGSQGQL 300

Query: 301 SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF 360
           SSLRKQGLSPI QQN EFSIQNEDFPALPRFKGGNADYGMD+HQT+QHENS+PMMQSQQF
Sbjct: 301 SSLRKQGLSPIAQQNHEFSIQNEDFPALPRFKGGNADYGMDIHQTDQHENSMPMMQSQQF 360

Query: 361 SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY 420
           SIGRSAGF+LGSTY+HRPQQQQQHS AVSNSTVSFSPANNQDLLHLHGSD+FPSSH  SY
Sbjct: 361 SIGRSAGFNLGSTYSHRPQQQQQHSPAVSNSTVSFSPANNQDLLHLHGSDMFPSSHAASY 420

Query: 421 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK 480
           HQQS GPPGIGLRP+SSP+S SGMGYDQLIQQYQQHHGQSQFR + +SGV+QSFRDQGLK
Sbjct: 421 HQQSIGPPGIGLRPLSSPSSGSGMGYDQLIQQYQQHHGQSQFRLQPLSGVSQSFRDQGLK 480

Query: 481 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 540
           SMQ+AQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNS++NLHKTFGSPWSD
Sbjct: 481 SMQSAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSSDNLHKTFGSPWSD 540

Query: 541 EPAKGDPDFNVPQCYLIKPPPTLH---------------VSMPKDEAQLYAANELYNRGW 600
           EPAKGDPDFNVPQCYLIKPPPTLH                SMPKDEAQLYA+NELYNRGW
Sbjct: 541 EPAKGDPDFNVPQCYLIKPPPTLHGYFSKFTLETLFYIFFSMPKDEAQLYASNELYNRGW 600

Query: 601 FYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPALP 648
           FYHKEQRFWFIRVSNMEPLVKTNT+ERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPALP
Sbjct: 601 FYHKEQRFWFIRVSNMEPLVKTNTYERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPALP 660

[Close]

BLAST of CmaCh20G004390 vs. TAIR 10
Match: AT1G07705.2 (NOT2 / NOT3 / NOT5 family )

HSP 1 Score: 792.7 bits (2046), Expect = 2.2e-229
Identity = 438/668 (65.57%), Postives = 509/668 (76.20%), Query Frame = 0


Query: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60
           MS LLNSS+NGS SN+ DG+GR+F +SFSGQSGAASPVFHH+G++QGLHNIHG+FN+ N+
Sbjct: 1   MSSLLNSSINGSTSNLSDGSGRTFTSSFSGQSGAASPVFHHAGSIQGLHNIHGNFNVPNL 60

Query: 61  SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120
           +G+L  RNS++N VPS GVQQ  G++S+GR+ AS+N+PVALSQ+SHG SHGH G+ NRG 
Sbjct: 61  AGSLGSRNSSLNGVPSAGVQQQNGSISNGRF-ASSNIPVALSQMSHGSSHGHSGLTNRG- 120

Query: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV 180
                                                GLGVSPILGN G R+TSSMGNMV
Sbjct: 121 -------------------------------------GLGVSPILGNVGSRMTSSMGNMV 180

Query: 181 SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240
            GG +GR+++SGGGLS+P L SRLNL  NSGSG++   GQNR+M GVLPQGS QV+SMLG
Sbjct: 181 GGGTMGRTLSSGGGLSIPSLGSRLNLAVNSGSGNI---GQNRMMGGVLPQGSPQVLSMLG 240

Query: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDI-NDFPQLTSRPSSAGGPQGQ 300
           NSYPSAGG LSQNH+Q++NSLSS+G+LND+N+ND SPFDI NDFPQLTSRPSSAG  QGQ
Sbjct: 241 NSYPSAGG-LSQNHVQAMNSLSSMGLLNDMNSNDTSPFDINNDFPQLTSRPSSAGS-QGQ 300

Query: 301 LSSLRKQGL--SPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQ-HENSVPMMQ 360
           L S  KQGL  SPIVQQNQEFSIQNEDFPALP +KG +ADY MD+H  EQ HENSV MMQ
Sbjct: 301 LGSRLKQGLGISPIVQQNQEFSIQNEDFPALPGYKGSSADYPMDLHHKEQLHENSVLMMQ 360

Query: 361 SQQFSIGRSAGFSLGSTYT-HRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSS 420
           SQQ S+GRS GF+LG  YT HRPQQQQQH+ AVS+S VS           LHGSDIF SS
Sbjct: 361 SQQLSMGRSGGFNLGGAYTSHRPQQQQQHAQAVSSSGVS-----------LHGSDIFSSS 420

Query: 421 HTTSYHQQSSGPPGIGLRPMSSPNSASGMGYD-QLIQQYQQHHGQSQFRFKSMSGVNQSF 480
           H   YH Q+ G PGIGLR M+S NS +GMGYD QLIQQYQ     +Q+R + MS  +Q F
Sbjct: 421 H-PPYHSQTGGAPGIGLRSMNSANSITGMGYDQQLIQQYQHQQNSAQYRLQQMSAASQPF 480

Query: 481 RDQGLKSMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTF 540
           RD GLKSMQ+ QS+PD FGLLGLLSVI++SDPDL SLALGIDLTTLGLNLNS ENLHKTF
Sbjct: 481 RDVGLKSMQSTQSNPDRFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTF 540

Query: 541 GSPWSDEPAKGDPDFNVPQCYLIKPPPTLH----------------VSMPKDEAQLYAAN 600
           GSPWS+EP+K DP+F+VPQCY  K PP LH                 SMPKDEAQLYAAN
Sbjct: 541 GSPWSNEPSKVDPEFSVPQCYYAKNPPPLHQGLFAKLLVETLFYVFYSMPKDEAQLYAAN 600

Query: 601 ELYNRGWFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMV 647
           ELYNRGWFYHKE R WFIR+   EPLVKTN +ERGSY CFDP +FE V+K+NFVL+YEM+
Sbjct: 601 ELYNRGWFYHKEHRLWFIRIG--EPLVKTNAYERGSYHCFDPNSFEIVQKENFVLYYEML 610

[Close]

BLAST of CmaCh20G004390 vs. TAIR 10
Match: AT5G59710.1 (VIRE2 interacting protein 2 )

HSP 1 Score: 746.9 bits (1927), Expect = 1.4e-215
Identity = 418/662 (63.14%), Postives = 501/662 (75.68%), Query Frame = 0


Query: 5   LNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNMSGAL 64
           L+SSLNGSASN+PDG+GRSF  S+SGQSGA SP FHH+G +QGLHNIHG++N+ NM G L
Sbjct: 4   LHSSLNGSASNLPDGSGRSFTASYSGQSGAPSPSFHHTGNLQGLHNIHGNYNVGNMQGTL 63

Query: 65  ALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGGISVV 124
             RNS++N++PS GVQQP G+ SSGR+ ASNNLPV LSQLSHG SHGH G+ NR G++VV
Sbjct: 64  TSRNSSMNSIPSAGVQQPNGSFSSGRF-ASNNLPVNLSQLSHGSSHGHSGIPNR-GLNVV 123

Query: 125 GNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMVSGGN 184
           GNPGFSS+ N VGGSIPGILS+SAG+ NRN+VPG+G+S +LGNSGPRIT+SMGNMV GGN
Sbjct: 124 GNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGGGN 183

Query: 185 IGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLGNSYP 244
           +GR+I+S GGLS+PGLSSRLNL ANSGSG L+VQGQNR+M GVLPQGS QV+SMLGNSY 
Sbjct: 184 LGRNISS-GGLSIPGLSSRLNLAANSGSG-LNVQGQNRMMGGVLPQGS-QVMSMLGNSYH 243

Query: 245 SAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDI-NDFPQLTSRPSSAGGPQGQLSSL 304
           + GGPLSQNH+QSVN++    ML+D + ND+S FDI NDFPQLTSRP SAGG QG L SL
Sbjct: 244 TGGGPLSQNHVQSVNNM----MLSD-HPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSL 303

Query: 305 RKQGLS-PIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQ-HENSVPMMQSQQFS 364
           RKQGL  P+VQQNQEFSIQNEDFPALP +KGGN++Y MD+HQ EQ H+N++ MM SQ FS
Sbjct: 304 RKQGLGVPLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNFS 363

Query: 365 IGRSAGFSLGSTY-THRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTTSY 424
           +GRS GF+LG+TY +HRPQQQ QH+S+                                 
Sbjct: 364 MGRSGGFNLGATYSSHRPQQQPQHTSS--------------------------------- 423

Query: 425 HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFKSMSGVNQSFRDQGLK 484
              + G  G+GLRP+SSPN+ S +GYDQLIQQYQQH  QSQF  + MS +NQ FRD  +K
Sbjct: 424 ---TGGLQGLGLRPLSSPNAVSSIGYDQLIQQYQQHQNQSQFPVQQMSSINQ-FRDSEMK 483

Query: 485 SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD 544
           S    QS  DPF LLGLL V+  S+P+L SLALGIDLTTLGL+LNS  NL+KTF SPW++
Sbjct: 484 S---TQSEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTN 543

Query: 545 EPAKGDPDFNVPQCYLIKPPPTL----------------HVSMPKDEAQLYAANELYNRG 604
           EPAK + +F VP CY    PP L                  SMPKDEAQLYAA+ELY RG
Sbjct: 544 EPAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERG 603

Query: 605 WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL 647
           WFYHKE R WF RV   EPLV+  T+ERG+Y   DP +F+TVRK++FV+ YE++EKRP+L
Sbjct: 604 WFYHKELRVWFFRVG--EPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSL 613

[Close]

BLAST of CmaCh20G004390 vs. TAIR 10
Match: AT1G07705.1 (NOT2 / NOT3 / NOT5 family )

HSP 1 Score: 688.3 bits (1775), Expect = 5.8e-198
Identity = 391/602 (64.95%), Postives = 453/602 (75.25%), Query Frame = 0


Query: 1   MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM 60
           MS LLNSS+NGS SN+ DG+GR+F +SFSGQSGAASPVFHH+G++QGLHNIHG+FN+ N+
Sbjct: 1   MSSLLNSSINGSTSNLSDGSGRTFTSSFSGQSGAASPVFHHAGSIQGLHNIHGNFNVPNL 60

Query: 61  SGALALRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG 120
           +G+L  RNS++N VPS GVQQ  G++S+GR+ AS+N+PVALSQ+SHG SHGH G+ NRG 
Sbjct: 61  AGSLGSRNSSLNGVPSAGVQQQNGSISNGRF-ASSNIPVALSQMSHGSSHGHSGLTNRG- 120

Query: 121 ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITSSMGNMV 180
                                                GLGVSPILGN G R+TSSMGNMV
Sbjct: 121 -------------------------------------GLGVSPILGNVGSRMTSSMGNMV 180

Query: 181 SGGNIGRSITSGGGLSLPGLSSRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG 240
            GG +GR+++SGGGLS+P L SRLNL  NSGSG++   GQNR+M GVLPQGS QV+SMLG
Sbjct: 181 GGGTMGRTLSSGGGLSIPSLGSRLNLAVNSGSGNI---GQNRMMGGVLPQGSPQVLSMLG 240

Query: 241 NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDI-NDFPQLTSRPSSAGGPQGQ 300
           NSYPSAGG LSQNH+Q++NSLSS+G+LND+N+ND SPFDI NDFPQLTSRPSSAG  QGQ
Sbjct: 241 NSYPSAGG-LSQNHVQAMNSLSSMGLLNDMNSNDTSPFDINNDFPQLTSRPSSAGS-QGQ 300

Query: 301 LSSLRKQGL--SPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQ-HENSVPMMQ 360
           L S  KQGL  SPIVQQNQEFSIQNEDFPALP +KG +ADY MD+H  EQ HENSV MMQ
Sbjct: 301 LGSRLKQGLGISPIVQQNQEFSIQNEDFPALPGYKGSSADYPMDLHHKEQLHENSVLMMQ 360

Query: 361 SQQFSIGRSAGFSLGSTYT-HRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSS 420
           SQQ S+GRS GF+LG  YT HRPQQQQQH+ AVS+S VS           LHGSDIF SS
Sbjct: 361 SQQLSMGRSGGFNLGGAYTSHRPQQQQQHAQAVSSSGVS-----------LHGSDIFSSS 420

Query: 421 HTTSYHQQSSGPPGIGLRPMSSPNSASGMGYD-QLIQQYQQHHGQSQFRFKSMSGVNQSF 480
           H   YH Q+ G PGIGLR M+S NS +GMGYD QLIQQYQ     +Q+R + MS  +Q F
Sbjct: 421 H-PPYHSQTGGAPGIGLRSMNSANSITGMGYDQQLIQQYQHQQNSAQYRLQQMSAASQPF 480

Query: 481 RDQGLKSMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTF 540
           RD GLKSMQ+ QS+PD FGLLGLLSVI++SDPDL SLALGIDLTTLGLNLNS ENLHKTF
Sbjct: 481 RDVGLKSMQSTQSNPDRFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTF 540

Query: 541 GSPWSDEPAKGDPDFNVPQCYLIKPPPTLH----------------VSMPKDEAQLYAAN 581
           GSPWS+EP+K DP+F+VPQCY  K PP LH                 SMPKDEAQLYAAN
Sbjct: 541 GSPWSNEPSKVDPEFSVPQCYYAKNPPPLHQGLFAKLLVETLFYVFYSMPKDEAQLYAAN 546

The following BLAST results are available for this feature:

BLAST of CmaCh20G004390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q52JK6	3.4e-243	72.65	Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthami...	[more]
Q9FPW4	1.9e-214	63.14	Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8C5L3	1.0e-29	27.34	CCR4-NOT transcription complex subunit 2 OS=Mus musculus OX=10090 GN=Cnot2 PE=1 ...	[more]
Q9NZN8	2.2e-29	27.16	CCR4-NOT transcription complex subunit 2 OS=Homo sapiens OX=9606 GN=CNOT2 PE=1 S...	[more]
Q94547	9.5e-20	26.31	Regulator of gene activity OS=Drosophila melanogaster OX=7227 GN=Rga PE=1 SV=2	[more]

BLAST of CmaCh20G004390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYL0	0.0e+00	96.53	probable NOT transcription complex subunit VIP2 isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1FU31	0.0e+00	95.93	probable NOT transcription complex subunit VIP2 isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1FVE2	0.0e+00	96.28	probable NOT transcription complex subunit VIP2 isoform X3 OS=Cucurbita moschata...	[more]
A0A6J1G5Z5	0.0e+00	89.74	probable NOT transcription complex subunit VIP2 isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1G5I6	0.0e+00	88.69	probable NOT transcription complex subunit VIP2 isoform X1 OS=Cucurbita moschata...	[more]

BLAST of CmaCh20G004390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944310.1	0.0e+00	96.53	probable NOT transcription complex subunit VIP2 isoform X1 [Cucurbita moschata] ...	[more]
KAG6570737.1	0.0e+00	96.23	putative NOT transcription complex subunit VIP2, partial [Cucurbita argyrosperma...	[more]
XP_022944311.1	0.0e+00	95.93	probable NOT transcription complex subunit VIP2 isoform X2 [Cucurbita moschata] ...	[more]
XP_022944312.1	0.0e+00	96.28	probable NOT transcription complex subunit VIP2 isoform X3 [Cucurbita moschata] ...	[more]
XP_023532184.1	0.0e+00	90.03	probable NOT transcription complex subunit VIP2 isoform X2 [Cucurbita pepo subsp...	[more]

BLAST of CmaCh20G004390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07705.2	2.2e-229	65.57	NOT2 / NOT3 / NOT5 family	[more]
AT5G59710.1	1.4e-215	63.14	VIRE2 interacting protein 2	[more]
AT1G07705.1	5.8e-198	64.95	NOT2 / NOT3 / NOT5 family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007282	NOT2/NOT3/NOT5, C-terminal	PFAM	PF04153	NOT2_3_5	coord: 566..637 e-value: 1.3E-20 score: 73.9
IPR038635	CCR4-NOT complex subunit 2/3/5, N-terminal domain superfamily	GENE3D	2.30.30.1020		coord: 565..647 e-value: 4.7E-28 score: 99.9 coord: 482..564 e-value: 4.7E-20 score: 73.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 367..403
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 318..341
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 411..444
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 367..444
None	No IPR available	PANTHER	PTHR23326:SF15	NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED	coord: 2..647
IPR040168	Not2/Not3/Not5	PANTHER	PTHR23326	CCR4 NOT-RELATED	coord: 2..647

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G004390.1	CmaCh20G004390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0000932	P-body