CmaCh20G004360 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G004360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	nudix hydrolase 9
Location	Cma_Chr20: 2065398 .. 2067333 (+)
RNA-Seq Expression	CmaCh20G004360
Synteny	CmaCh20G004360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGTTCCAGCTTGAGGAAAAAGATGCAGAAGGCAGTGGATGTACCACTCTCCCCGTTCAAGATTCTGATCGCACGTCTATCTGGTCTTCCTCCATCATAGTTCCTCTATTTTCCACTCTATCTCTCCGAATGCTGTTCTGATTCATGTGCGCATTCATAATCGAGTTTCTGATTCATAAGTGCAATTCTCGATCGATAGGTTTCTGCAGCTTTAACCGAGAGGGACGATAGAGTTCTGCATCCCGATTCTAGCTTGGAGGATTGCATTTCCGAGGTGAGACGTAGAATTTTCTTGTGATTGCTCGTTTTATTATAGATGTTCTTGTGATTAGCCATAGAAGCTTGATTTTAATCTAATGCTGGGGAGAGGACTTATTTACAAGGCTGCTGAAATGGTTAAATCTGTTCAATCTTGATTTTGGTAGCGCTTATGCTGTTTGTTCGAGTCCTTCACATATTCTGTAACGTTATATTCGCCATGTTGACTAGGAGTTGTTAGTCTTGTAGGCATGTGAATCCGGTTCGAATCAACTGCTTCAGATAAACTCGTCGTTATTCAATGGAAAGAAGTTTAGAGTACGCTTGTTTATTTTAATTTAAGCTTATTTGCATTATTTCGTTTGTGCTTTAACCAGCTTGTTTGATTTGTTTCTGAAAACTTGATAGATTACGTAACTCATAATTTTTGTAATATCTCTGCCTTGCAACATGTGAAGTTTTGATCTCGGAATCTACTATTTTATCGTTATTTAGAAACCAGAATCATAAAAACTGAGTAAAAAATTTGTTTCAATGGCGTTGGACTGTAGTTTGTATCTGAAGTTTAGCATTATTCATTCGTTCACCTACATTTTATCACCTCCTTTCAGATGTATTAGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGTATAGAGTATCAACTAGTATATTCTTTCTCGATGAATGTCAGTGTGGAGGATTCACATTACTTAGTGAAGGAGGTAGTTCAAATGAAGACTCTCATGTATGCTTCCACTTTGGTTTAACAGATTATAGGTCTTTCTCCATCTCTGTTATATTTATATATTCGAAAAGGCTTATAGGATTTGATGAATATTAACATTTTGAAAATTGAAATTATTTCGTACTTTTAGCATTTCATTCTGTACCATTGTCTTTCATGTTGATGTATGATGTCCTTCAAGAGGTTTGATTTCCAATGAATGAGTTATATCCATGTGTTTTTCAGAAAAGTATCCTTGAAGTTATTATAATGGAAGGTAGGGTGTGATGTCCCGTTAGAAATTACCATTGTTAGCGTATTGGTAGTTTGAACTCATGACATATTTTTCTCTAGAAAAGGAGCACTTCTTTCTTTCTTTCCTTGTTTGAGAACCTAAATTTATCTCCACATTCAAGAATATGATTTTCTTACAGATATCGCAGTAGCTTTCTAAAGTAGTTTAGTTCCTTGAGTGATTGCGGATCGCGTTAGTTTCAATAATTAGAAGTCCAATTCCATTATTAGTGAATTTATTTTCAATTATATCAATCATAAAATTTGTAAATTTATTTCTATTGGTGGCTAATAGAAAATGGCACGATAATAATCAGAACGTTGTGATTATTCGAGCCATTTTTGTCCACTATCATTTTTCCCATATTCCTTAGTTCTTGCGAACTACTTATGCTGCCATGTAATAGTTCAACTTATAACTTTGTTCATGCTAGAAACTAAATGAAAGAGAATCCATATTCTCTGGAAGTTAAGTCACAAACCCATTGAAATTGTATGGTTTATTTGCAAGTATTTTGCTTTCCAAATTGTTTTCCTGCAGACCACTCAATCTGTTGTCAACATTCCTCAAGTCCTCTGGTTAACAGTGCCATGGCGGAGACTTCAGATGGGAAAGGAGTAA

mRNA sequence

GCTGTTCCAGCTTGAGGAAAAAGATGCAGAAGGCAGTGGATGTACCACTCTCCCCGTTCAAGATTCTGATCGCACGTCTATCTGCTTTAACCGAGAGGGACGATAGAGTTCTGCATCCCGATTCTAGCTTGGAGGATTGCATTTCCGAGGCATGTGAATCCGGTTCGAATCAACTGCTTCAGATAAACTCGTCGTTATTCAATGGAAAGAAGTTTAGATATAGAGTATCAACTAGTATATTCTTTCTCGATGAATGTCAGTGTGGAGGATTCACATTACTTAGTGAAGGAGGTAGTTCAAATGAAGACTCTCATACCACTCAATCTGTTGTCAACATTCCTCAAGTCCTCTGGTTAACAGTGCCATGGCGGAGACTTCAGATGGGAAAGGAGTAA

Coding sequence (CDS)

ATGCAGAAGGCAGTGGATGTACCACTCTCCCCGTTCAAGATTCTGATCGCACGTCTATCTGCTTTAACCGAGAGGGACGATAGAGTTCTGCATCCCGATTCTAGCTTGGAGGATTGCATTTCCGAGGCATGTGAATCCGGTTCGAATCAACTGCTTCAGATAAACTCGTCGTTATTCAATGGAAAGAAGTTTAGATATAGAGTATCAACTAGTATATTCTTTCTCGATGAATGTCAGTGTGGAGGATTCACATTACTTAGTGAAGGAGGTAGTTCAAATGAAGACTCTCATACCACTCAATCTGTTGTCAACATTCCTCAAGTCCTCTGGTTAACAGTGCCATGGCGGAGACTTCAGATGGGAAAGGAGTAA

Protein sequence

MQKAVDVPLSPFKILIARLSALTERDDRVLHPDSSLEDCISEACESGSNQLLQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSHTTQSVVNIPQVLWLTVPWRRLQMGKE

Homology

[Close]

BLAST of CmaCh20G004360 vs. ExPASy Swiss-Prot
Match: Q8VYR2 (Nudix hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=NUDT9 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-04
Identity = 33/89 (37.08%), Postives = 44/89 (49.44%), Query Frame = 0


Query: 9  LSPFKILIARLSALTERDDRVLHPDSSLEDCISEACESGSNQLLQINSSLFNGKKFRYRV 68
          LSP ++ +      ++  DR+   D  LED IS+  E  S    Q NSSLFNG+KFRY  
Sbjct: 25 LSPSQVSV----DFSKSHDRIPRQDPGLEDSISQVWEQRS----QGNSSLFNGQKFRY-- 84

Query: 69 STSIFFLDECQCGGFTLLSEGGSSNEDSH 98
                      GG+ L  + GS+NE  H
Sbjct: 85 ------------GGYCLDDDDGSTNEVPH 91

[Close]

BLAST of CmaCh20G004360 vs. ExPASy TrEMBL
Match: A0A5D3DKU4 (Nudix hydrolase 9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00330 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.6e-17
Identity = 60/106 (56.60%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 1  MQKAVDVPLSPFKILIARLSALT---------ERDDRVLHPDSSLEDCISEACESGSNQL 60
          M+KAVDV  SPFKILIA  S LT         ++ DR+ HPDSSLED I+E      NQ 
Sbjct: 1  MEKAVDVSCSPFKILIASPSGLTPSQVSIAFSDKYDRIPHPDSSLEDSITEIW----NQR 60

Query: 61 LQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSH 98
          LQ NSSLFNGKKFRY              GGFT+LSEGGSSNED H
Sbjct: 61 LQTNSSLFNGKKFRY--------------GGFTILSEGGSSNEDPH 88

[Close]

BLAST of CmaCh20G004360 vs. ExPASy TrEMBL
Match: A0A1S4DXX8 (nudix hydrolase 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490571 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.6e-17
Identity = 60/106 (56.60%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 1  MQKAVDVPLSPFKILIARLSALT---------ERDDRVLHPDSSLEDCISEACESGSNQL 60
          M+KAVDV  SPFKILIA  S LT         ++ DR+ HPDSSLED I+E      NQ 
Sbjct: 1  MEKAVDVSCSPFKILIASPSGLTPSQVSIAFSDKYDRIPHPDSSLEDSITEIW----NQR 60

Query: 61 LQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSH 98
          LQ NSSLFNGKKFRY              GGFT+LSEGGSSNED H
Sbjct: 61 LQTNSSLFNGKKFRY--------------GGFTILSEGGSSNEDPH 88

[Close]

BLAST of CmaCh20G004360 vs. ExPASy TrEMBL
Match: A0A1S3BJH7 (nudix hydrolase 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490571 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.6e-17
Identity = 60/106 (56.60%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 1  MQKAVDVPLSPFKILIARLSALT---------ERDDRVLHPDSSLEDCISEACESGSNQL 60
          M+KAVDV  SPFKILIA  S LT         ++ DR+ HPDSSLED I+E      NQ 
Sbjct: 1  MEKAVDVSCSPFKILIASPSGLTPSQVSIAFSDKYDRIPHPDSSLEDSITEIW----NQR 60

Query: 61 LQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSH 98
          LQ NSSLFNGKKFRY              GGFT+LSEGGSSNED H
Sbjct: 61 LQTNSSLFNGKKFRY--------------GGFTILSEGGSSNEDPH 88

[Close]

BLAST of CmaCh20G004360 vs. ExPASy TrEMBL
Match: A0A5A7V3T1 (Nudix hydrolase 9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002530 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.6e-17
Identity = 60/106 (56.60%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1  MQKAVDVPLSPFKILIARLSALT---------ERDDRVLHPDSSLEDCISEACESGSNQL 60
          M+KAVDV  SPFKILIA  S LT         ++ DR+ HPDSSLED I+E      NQ 
Sbjct: 1  MEKAVDVSCSPFKILIASPSGLTPSQVSIAFSDKYDRIPHPDSSLEDSITEIW----NQR 60

Query: 61 LQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSH 98
          LQ NSSLFNGKKFRY              GGFT LSEGGSSNED H
Sbjct: 61 LQTNSSLFNGKKFRY--------------GGFTFLSEGGSSNEDPH 88

[Close]

BLAST of CmaCh20G004360 vs. ExPASy TrEMBL
Match: A0A0A0KET8 (Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G302170 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.6e-17
Identity = 60/106 (56.60%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1  MQKAVDVPLSPFKILIARLSALT---------ERDDRVLHPDSSLEDCISEACESGSNQL 60
          M+KAVDV  SPFKILIA  S LT         ++ DR+ HPDSSLED I+E      NQ 
Sbjct: 1  MEKAVDVQRSPFKILIASPSGLTPSQVSIAFSDKYDRISHPDSSLEDSITEIW----NQR 60

Query: 61 LQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSH 98
          LQ NSSLFNGKKFRY              GGFT LSEGGSSNED H
Sbjct: 61 LQTNSSLFNGKKFRY--------------GGFTFLSEGGSSNEDPH 88

[Close]

BLAST of CmaCh20G004360 vs. NCBI nr
Match: XP_008448354.1 (PREDICTED: nudix hydrolase 9 isoform X1 [Cucumis melo] >TYK23970.1 nudix hydrolase 9 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 60/106 (56.60%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 1  MQKAVDVPLSPFKILIARLSALT---------ERDDRVLHPDSSLEDCISEACESGSNQL 60
          M+KAVDV  SPFKILIA  S LT         ++ DR+ HPDSSLED I+E      NQ 
Sbjct: 1  MEKAVDVSCSPFKILIASPSGLTPSQVSIAFSDKYDRIPHPDSSLEDSITEIW----NQR 60

Query: 61 LQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSH 98
          LQ NSSLFNGKKFRY              GGFT+LSEGGSSNED H
Sbjct: 61 LQTNSSLFNGKKFRY--------------GGFTILSEGGSSNEDPH 88

[Close]

BLAST of CmaCh20G004360 vs. NCBI nr
Match: XP_016900565.1 (PREDICTED: nudix hydrolase 9 isoform X2 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 60/106 (56.60%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 1  MQKAVDVPLSPFKILIARLSALT---------ERDDRVLHPDSSLEDCISEACESGSNQL 60
          M+KAVDV  SPFKILIA  S LT         ++ DR+ HPDSSLED I+E      NQ 
Sbjct: 1  MEKAVDVSCSPFKILIASPSGLTPSQVSIAFSDKYDRIPHPDSSLEDSITEIW----NQR 60

Query: 61 LQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSH 98
          LQ NSSLFNGKKFRY              GGFT+LSEGGSSNED H
Sbjct: 61 LQTNSSLFNGKKFRY--------------GGFTILSEGGSSNEDPH 88

[Close]

BLAST of CmaCh20G004360 vs. NCBI nr
Match: XP_004148238.2 (nudix hydrolase 9 [Cucumis sativus] >KGN47349.1 hypothetical protein Csa_023049 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 60/106 (56.60%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1  MQKAVDVPLSPFKILIARLSALT---------ERDDRVLHPDSSLEDCISEACESGSNQL 60
          M+KAVDV  SPFKILIA  S LT         ++ DR+ HPDSSLED I+E      NQ 
Sbjct: 1  MEKAVDVQRSPFKILIASPSGLTPSQVSIAFSDKYDRISHPDSSLEDSITEIW----NQR 60

Query: 61 LQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSH 98
          LQ NSSLFNGKKFRY              GGFT LSEGGSSNED H
Sbjct: 61 LQTNSSLFNGKKFRY--------------GGFTFLSEGGSSNEDPH 88

[Close]

BLAST of CmaCh20G004360 vs. NCBI nr
Match: KAA0061960.1 (nudix hydrolase 9 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 60/106 (56.60%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1  MQKAVDVPLSPFKILIARLSALT---------ERDDRVLHPDSSLEDCISEACESGSNQL 60
          M+KAVDV  SPFKILIA  S LT         ++ DR+ HPDSSLED I+E      NQ 
Sbjct: 1  MEKAVDVSCSPFKILIASPSGLTPSQVSIAFSDKYDRIPHPDSSLEDSITEIW----NQR 60

Query: 61 LQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSH 98
          LQ NSSLFNGKKFRY              GGFT LSEGGSSNED H
Sbjct: 61 LQTNSSLFNGKKFRY--------------GGFTFLSEGGSSNEDPH 88

[Close]

BLAST of CmaCh20G004360 vs. NCBI nr
Match: XP_038901216.1 (nudix hydrolase 9 isoform X1 [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-16
Identity = 61/106 (57.55%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 1  MQKAVDVPLSPFKILIARLS---------ALTERDDRVLHPDSSLEDCISEACESGSNQL 60
          M+KAVDVP SPFKILIA  S         A +E  DR+ HPDSSLED ISE      NQ 
Sbjct: 1  MEKAVDVPRSPFKILIACPSGLPPSQVSIAFSESYDRIPHPDSSLEDSISEIW----NQR 60

Query: 61 LQINSSLFNGKKFRYRVSTSIFFLDECQCGGFTLLSEGGSSNEDSH 98
          LQ NS LFNGKKFRY              GGFT LSEGGS NEDSH
Sbjct: 61 LQTNSFLFNGKKFRY--------------GGFTFLSEGGSMNEDSH 88

[Close]

BLAST of CmaCh20G004360 vs. TAIR 10
Match: AT3G46200.1 (nudix hydrolase homolog 9 )

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-05
Identity = 33/89 (37.08%), Postives = 44/89 (49.44%), Query Frame = 0


Query: 9  LSPFKILIARLSALTERDDRVLHPDSSLEDCISEACESGSNQLLQINSSLFNGKKFRYRV 68
          LSP ++ +      ++  DR+   D  LED IS+  E  S    Q NSSLFNG+KFRY  
Sbjct: 25 LSPSQVSV----DFSKSHDRIPRQDPGLEDSISQVWEQRS----QGNSSLFNGQKFRY-- 84

Query: 69 STSIFFLDECQCGGFTLLSEGGSSNEDSH 98
                      GG+ L  + GS+NE  H
Sbjct: 85 ------------GGYCLDDDDGSTNEVPH 91

The following BLAST results are available for this feature:

BLAST of CmaCh20G004360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYR2	4.0e-04	37.08	Nudix hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=NUDT9 PE=2 SV=1	[more]

BLAST of CmaCh20G004360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DKU4	5.6e-17	56.60	Nudix hydrolase 9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S4DXX8	5.6e-17	56.60	nudix hydrolase 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490571 PE=4 SV=1	[more]
A0A1S3BJH7	5.6e-17	56.60	nudix hydrolase 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490571 PE=4 SV=1	[more]
A0A5A7V3T1	9.6e-17	56.60	Nudix hydrolase 9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0KET8	9.6e-17	56.60	Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G30...	[more]

BLAST of CmaCh20G004360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448354.1	1.2e-16	56.60	PREDICTED: nudix hydrolase 9 isoform X1 [Cucumis melo] >TYK23970.1 nudix hydrola...	[more]
XP_016900565.1	1.2e-16	56.60	PREDICTED: nudix hydrolase 9 isoform X2 [Cucumis melo]	[more]
XP_004148238.2	2.0e-16	56.60	nudix hydrolase 9 [Cucumis sativus] >KGN47349.1 hypothetical protein Csa_023049 ...	[more]
KAA0061960.1	2.0e-16	56.60	nudix hydrolase 9 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_038901216.1	3.4e-16	57.55	nudix hydrolase 9 isoform X1 [Benincasa hispida]	[more]

BLAST of CmaCh20G004360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46200.1	2.9e-05	37.08	nudix hydrolase homolog 9	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G004360.1	CmaCh20G004360.1	mRNA