CmaCh20G004260 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G004260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 2018239 .. 2018740 (-)
RNA-Seq ExpressionCmaCh20G004260
SyntenyCmaCh20G004260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATTTAAATTAAAAAAAGTATATTAAGAAAAGAATTAAAAAAATTATACATCGTCAGGAAATAGAGTATTTTCTTCAACATAGTTTCCACTTTCTAGAACTGGAGTTTGCTCAATTACCCTATCAGTCCCCTCCCTCATGAAGCCATCATTTTTGTCGAAATTCGTCGCCGGAGTGGTAGCCTCGCCGGAAATCTACTGTTTCGCAACCTAGTAATCAACAGACGGTATGTTTTCCCTGTTCATGTTAATGGTAGAAAGAAGTTCAATTTTGTGTTTCTGCGTCTATTTCTAGGTTTTTCGCCTGCTCGAAAAATTGCACGATCGATGTTGTTTCGCTATTGTGTAAAAGGAGAATGATGTCTTCTTTTCTTGACATTTTCGGCGTTTATTAGAAGTATAAGTACAGTTCTTTTCTCATTAATTGGTGCAGTGAAGTGGTGAGCTCGAAGAAATTTGGAGATTGTTCGTTTAACGAGGAACCTATGTTTTTAGACTGA

mRNA sequence

ATGATATTTAAATTAAAAAAAAACTGGAGTTTGCTCAATTACCCTATCAGTCCCCTCCCTCATGAAGCCATCATTTTTGTCGAAATTCGTCGCCGGAGTGGTAGCCTCGCCGGAAATCTACTGTTTCGCAACCTAGTAATCAACAGACGTGAAGTGGTGAGCTCGAAGAAATTTGGAGATTGTTCGTTTAACGAGGAACCTATGTTTTTAGACTGA

Coding sequence (CDS)

ATGATATTTAAATTAAAAAAAAACTGGAGTTTGCTCAATTACCCTATCAGTCCCCTCCCTCATGAAGCCATCATTTTTGTCGAAATTCGTCGCCGGAGTGGTAGCCTCGCCGGAAATCTACTGTTTCGCAACCTAGTAATCAACAGACGTGAAGTGGTGAGCTCGAAGAAATTTGGAGATTGTTCGTTTAACGAGGAACCTATGTTTTTAGACTGA

Protein sequence

MIFKLKKNWSLLNYPISPLPHEAIIFVEIRRRSGSLAGNLLFRNLVINRREVVSSKKFGDCSFNEEPMFLD
Homology
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BLAST of CmaCh20G004260 vs. NCBI nr
Match: KAG6570728.1 (Zinc finger protein ZAT12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 4.3e-24
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 0 

Query: 8   NWSLLNYPISPLPHEAIIFVEIRRRSGSLAGNLLFRNLVINRREVVSSKKFGDCSFNEEP 67
           NWSL NYPISPLPHEAII VEIRRRSGSLAG LLFRNLVIN REVVSSKKFGDCSFNEE 
Sbjct: 220 NWSLPNYPISPLPHEAIIVVEIRRRSGSLAGTLLFRNLVINGREVVSSKKFGDCSFNEES 279

Query: 68  MFLD 72
           +FLD
Sbjct: 280 LFLD 283

The following BLAST results are available for this feature:
BLAST of CmaCh20G004260 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G004260 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G004260 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570728.14.3e-2490.63Zinc finger protein ZAT12, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh20G004260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G004260.1CmaCh20G004260.1mRNA