CmaCh20G004040 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G004040
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 1935620 .. 1936599 (-)
RNA-Seq ExpressionCmaCh20G004040
SyntenyCmaCh20G004040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAACAGTCTTTGGAGTTTCAATAATTTTGCCACCAACCCATTAATCTCTGTCAACTAACTCATGTATTCATCTTATGAAGACCTGCCCTGAGGTCGAGGTTATGGAGTTTGGACCAGGCAAGGAGACTCGTTCTGGGACCAAGTGGACCAGGATTCACCTATCTTGGGTGCTGTGGGTATCCACGGTTAGTATTCATTACTTGAAATGATATTAGCATCTTGATTCTTTGATATCTATCAAATTTCTGAAGGATACTCATGAACACACATCAAAATGTTTTGGTGATATCAAAGAATAAAGCAATAATCATTCTTTTTTGGTCATAGTCAAATCAAGTTCTTCACCATATCAACGCCTTTACTTTTCTCCTCCTCCTATCTATCTACCCTTTGGTTTATTTTACATAAACATAACTTTGGAGCAAGGAAAAACCTGCAAGTTTCTTATTTTTCTATCTAATCTCCAGGAGCCGCCGCCTTCTGAACCTTCCATAGCCTGTGAAACTTCGTTAGCTGCTGAAGGAAAACCCTACCTTTTTCCTTTCTTGGTATGAATGCATCCCTATAGTCCCATATTTAGTAATTCCTATGTATTAGGATCATCGAGATAAGCAAGAATACTATTTCTACGAAAAATACCATTTATGGGTATTTCAATCGGGGTGGTAGTTCTTTTTCTCGTTCTTGAAGTGATTCAAATTGAATGATTGCTATTTAAGGTTTTGAAACTGTTCCCCTCTGTTTTTTTTTTCTACTTTTTTGTTCTTAAATTCTGCAATAAATATCTAGGGGGCTTTAACTCATGTCAGCTGCCTCAATTTATTGTCTTGTTAGAGTTTCTAAACGTTGAAGCGAACTGAAAATTCTGTTTATGTTTCTTTTACTGTTTTGTTGAAAGGGTCTGTTCTTTTAACTTTCTGACTGTTTTTTTTGTTCTTGTTTTTGTTTTTTTTGAAGAACATCGCTGTTGAAATATAG

mRNA sequence

TCTAACAGTCTTTGGAGTTTCAATAATTTTGCCACCAACCCATTAATCTCTGTCAACTAACTCATGTATTCATCTTATGAAGACCTGCCCTGAGGTCGAGGTTATGGAGTTTGGACCAGGCAAGGAGACTCGTTCTGGGACCAAGTGGACCAGGATTCACCTATCTTGGGTGCTGTGGGTATCCACGGAGCCGCCGCCTTCTGAACCTTCCATAGCCTGTGAAACTTCGTTAGCTGCTGAAGGAAAACCCTACCTTTTTCCTTTCTTGAACATCGCTGTTGAAATATAG

Coding sequence (CDS)

ATGAAGACCTGCCCTGAGGTCGAGGTTATGGAGTTTGGACCAGGCAAGGAGACTCGTTCTGGGACCAAGTGGACCAGGATTCACCTATCTTGGGTGCTGTGGGTATCCACGGAGCCGCCGCCTTCTGAACCTTCCATAGCCTGTGAAACTTCGTTAGCTGCTGAAGGAAAACCCTACCTTTTTCCTTTCTTGAACATCGCTGTTGAAATATAG

Protein sequence

MKTCPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETSLAAEGKPYLFPFLNIAVEI
Homology
[Close]
BLAST of CmaCh20G004040 vs. ExPASy TrEMBL
Match: A0A0A0KZ13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G598020 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 1  MKTCPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTE 39
          ++ C E+EVMEFGPG E RS T WTRIH SWVLW S +
Sbjct: 51 LRLCSEIEVMEFGPGHEIRSRTNWTRIHQSWVLWDSMD 88

[Close]
BLAST of CmaCh20G004040 vs. ExPASy TrEMBL
Match: A0A0A0KCA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 2   KTCPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVST 38
           K  PEVE MEFGPG+ET +GTK TRI   WVLWVST
Sbjct: 94  KPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 129

[Close]
BLAST of CmaCh20G004040 vs. NCBI nr
Match: KAG7010553.1 (hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 7.3e-32
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 1  MKTCPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETSLAAEGKPYL 60
          MKT PEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETSLAAEGKP+L
Sbjct: 1  MKTYPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETSLAAEGKPHL 60

Query: 61 FPFLNIAVEI 71
          FPFLNIAVEI
Sbjct: 61 FPFLNIAVEI 70

[Close]
BLAST of CmaCh20G004040 vs. NCBI nr
Match: KAG6570707.1 (Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 3.7e-20
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 2  KTCPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETS 52
          +T PEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETS
Sbjct: 28 QTYPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETS 77

[Close]
BLAST of CmaCh20G004040 vs. NCBI nr
Match: KAE8649779.1 (hypothetical protein Csa_012265 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 1   MKTCPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACET 51
           ++ C E+EVMEFGPG E RS T WTRIH SWVLW S EPPPS+P+I CET
Sbjct: 51  LRLCSEIEVMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCET 100

[Close]
BLAST of CmaCh20G004040 vs. NCBI nr
Match: KGN47177.2 (hypothetical protein Csa_020828 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 1  MKTCPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVST 38
          ++  PEVE MEFGPG+ET +GTK TRI   WVLWVST
Sbjct: 63 LRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 99

The following BLAST results are available for this feature:
BLAST of CmaCh20G004040 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G004040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ131.1e-0665.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G598020 PE=4 SV=1[more]
A0A0A0KCA11.1e-0472.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1[more]
BLAST of CmaCh20G004040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010553.17.3e-3297.14hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6570707.13.7e-2096.00Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia][more]
KAE8649779.12.6e-1370.00hypothetical protein Csa_012265 [Cucumis sativus][more]
KGN47177.22.9e-0467.57hypothetical protein Csa_020828 [Cucumis sativus][more]
BLAST of CmaCh20G004040 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G004040.1CmaCh20G004040.1mRNA