CmaCh20G000860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G000860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	Cma_Chr20: 366119 .. 367851 (-)
RNA-Seq Expression	CmaCh20G000860
Synteny	CmaCh20G000860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATCATGGACAATTCCAAATTGAATACTCAAAGTTTCAGTTTCTCACGGTCGGTTAATCTTTGACCCAATCCCATGTTCTCCGAAGCCGAAGCCTTTTCCCCACCCATTTCCACTTCTTATATTCTATTGCTTCTATTTTCAACTGCTTTAGTACCACTTCCTAAATCCTGCTTCTCTCAACGATTGTGATCTTCGAGTCTTTTTTTAGAATGGTGGGAGCTTTGTTTGCTGTGGGTGCGCCGGTGATCGACTCGCGGCCGTGCCCATGTTTGTGTTTGGACTCATCGCCGGTTACCAATACGAGTCTCAGAAGTCGTGGGGATTTGGTTTTGCCTAGGAGATCTAAGGCTAAGAGTCATTTAGCCGTGTCTCGGTTGGTGGATTTGAGAAGTTCGTTTGTCAACTCCGACAGCGAGTGGCAGCTCTCGGCCACCGGCCACCGGCGTTGGAGGAACCAACGGAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTACGAGGAGAGTTTTGATGATGTGAAAATGGTATGGACATGATATGACTCTCTTCTTCAATGCAAAATTTCTTAATTTCATGAATTCCAGTTCTCTTCTGTTTCCTTAATGTTGAGTGTTCTTGGGACTTGCATTCTGCATTCAAGGGGGGGTGGGAAACAAGACAGCTTACTTGATTCAGCTTCCTACGATGTCTTCTTCTTTCTCTAGCTTAAATTTTATGATCGTTCTTTCTTGTCCTCTGTTTCTTCAGTAGAGTAACATTATTATAAGCTTAACAGGGGCTTCCTACTTGCAGCAAATACTTAACTATTTCACATACAAAGCTGTGAAGACAGTTCTAAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATAAGTAAGTGAAGCCTTTCACTTGAGTTTTTACGAACTTAATTCATCAACACTGCCAATATAAATGCTTAGATTATCCTCAATAGTGTTCAGAACATATTCTATTTCCCAACCTAATCTTGACTTTCATTTTTTCTACACCAACAGCTTTGTTGTAAATCACAAGCCCAGGGATGGGAAGCGTTTCATCCGAACCCTTGTAAAGGTAGAAGTAAAGAAATCTCCTAGTTTTTTTTTTACATCCATTTTCAAAATACGGTCAACTTGAACCTAGCTCACTTGATTAAGACATCATATCTTCAAGGATATGAAATAATTGAGTATTGAACAATAAGATATTTGATGTGCGTGTGTTCGATTAACAGGAGAAACAGGATTTGGCTGAGAGAGTGATGATAACAAGACTTCATCTCTATAACAAATGGGTCAAGGTTAGAACAAATTAGTATTTTGAAGACAATTTCTTTGTTGGAGCCATTATAAGAACACATATTCCTTATGATTTGGTGTTATTGCTTAGAGATGTGATCACGCTGAAATATACAAAGAGATATCAGGCGAGAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTAATATGGCCTTCAGACGACAAGAGCTTTTAGAAGATTGGCTGACTAGGAGCTACTAGATTATTTCTTTTTCCTAATTTCTTTTCCTTTAGTTACGTCGACCAATCTGGCCATGTCCTTAGTAGTCAATTCTCATTCATATTATTTTTCATCAACTAAGAAGAATTCTTATATCCAATATTTAAAAGATTGTCACTGTAAATACTTTCAACCTCTTATACATGTTAAAAGTATCGATCTTAT

mRNA sequence

AAAATCATGGACAATTCCAAATTGAATACTCAAAGTTTCAGTTTCTCACGGTCGGTTAATCTTTGACCCAATCCCATGTTCTCCGAAGCCGAAGCCTTTTCCCCACCCATTTCCACTTCTTATATTCTATTGCTTCTATTTTCAACTGCTTTAGTACCACTTCCTAAATCCTGCTTCTCTCAACGATTGTGATCTTCGAGTCTTTTTTTAGAATGGTGGGAGCTTTGTTTGCTGTGGGTGCGCCGGTGATCGACTCGCGGCCGTGCCCATGTTTGTGTTTGGACTCATCGCCGGTTACCAATACGAGTCTCAGAAGTCGTGGGGATTTGGTTTTGCCTAGGAGATCTAAGGCTAAGAGTCATTTAGCCGTGTCTCGGTTGGTGGATTTGAGAAGTTCGTTTGTCAACTCCGACAGCGAGTGGCAGCTCTCGGCCACCGGCCACCGGCGTTGGAGGAACCAACGGAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTACGAGGAGAGTTTTGATGATGTGAAAATGCAAATACTTAACTATTTCACATACAAAGCTGTGAAGACAGTTCTAAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATAACTTTGTTGTAAATCACAAGCCCAGGGATGGGAAGCGTTTCATCCGAACCCTTGTAAAGGAGAAACAGGATTTGGCTGAGAGAGTGATGATAACAAGACTTCATCTCTATAACAAATGGGTCAAGAGATGTGATCACGCTGAAATATACAAAGAGATATCAGGCGAGAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTAATATGGCCTTCAGACGACAAGAGCTTTTAGAAGATTGGCTGACTAGGAGCTACTAGATTATTTCTTTTTCCTAATTTCTTTTCCTTTAGTTACGTCGACCAATCTGGCCATGTCCTTAGTAGTCAATTCTCATTCATATTATTTTTCATCAACTAAGAAGAATTCTTATATCCAATATTTAAAAGATTGTCACTGTAAATACTTTCAACCTCTTATACATGTTAAAAGTATCGATCTTAT

Coding sequence (CDS)

ATGGTGGGAGCTTTGTTTGCTGTGGGTGCGCCGGTGATCGACTCGCGGCCGTGCCCATGTTTGTGTTTGGACTCATCGCCGGTTACCAATACGAGTCTCAGAAGTCGTGGGGATTTGGTTTTGCCTAGGAGATCTAAGGCTAAGAGTCATTTAGCCGTGTCTCGGTTGGTGGATTTGAGAAGTTCGTTTGTCAACTCCGACAGCGAGTGGCAGCTCTCGGCCACCGGCCACCGGCGTTGGAGGAACCAACGGAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTACGAGGAGAGTTTTGATGATGTGAAAATGCAAATACTTAACTATTTCACATACAAAGCTGTGAAGACAGTTCTAAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATAACTTTGTTGTAAATCACAAGCCCAGGGATGGGAAGCGTTTCATCCGAACCCTTGTAAAGGAGAAACAGGATTTGGCTGAGAGAGTGATGATAACAAGACTTCATCTCTATAACAAATGGGTCAAGAGATGTGATCACGCTGAAATATACAAAGAGATATCAGGCGAGAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTAATATGGCCTTCAGACGACAAGAGCTTTTAG

Protein sequence

MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLRSSFVNSDSEWQLSATGHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKRCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF

Homology

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BLAST of CmaCh20G000860 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.0e-59
Identity = 119/213 (55.87%), Postives = 149/213 (69.95%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MV A F VG+PV+DS   PCLCLD+   T T  R             K  L  +R ++L 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAH-TTGTIRR-------------KKILGKARNLELG 60

Query: 61  SSFVNSDSEWQLSATGHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAVK 120
           SSF  S   ++LS     R  N++  + L+V  + AG Y+++F DV+ QI+NYFTYKAV+
Sbjct: 61  SSFTGSRIVFRLSPKRVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVR 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVL+QLYEMNP QY WFYN ++ ++P DGKRF+R L KE Q+LAERVMITRLHLY KW+K
Sbjct: 121 TVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWIK 180

Query: 181 RCDHAEIYKEISGENLELMRERLMETVIWPSDD 214
           +CDH +IY+EIS ENL LMRERLMETVIWPSDD
Sbjct: 181 KCDHGKIYQEISDENLALMRERLMETVIWPSDD 199

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BLAST of CmaCh20G000860 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-07
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 105 DVKMQILNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLA 164
           D    + +Y TY+A++TVL QL E NP    W +NF    K +DG+++I  L  EK DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAG-KVQDGEKYIEELFLEKPDLA 68

Query: 165 ERVMITRLHL 175
            R+M  R H+
Sbjct: 69  LRIMTVREHI 77

[Close]

BLAST of CmaCh20G000860 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-07
Identity = 24/65 (36.92%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 110 ILNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMI 169
           +++Y TY+AV+TV+ QL E +P +  W + F      +DG+R++  L +E+ DL  R++ 
Sbjct: 14  LISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILT 73

Query: 170 TRLHL 175
            R HL
Sbjct: 74  VREHL 78

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BLAST of CmaCh20G000860 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-06
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 105 DVKMQILNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLA 164
           D    + +Y TY+A+ TVL QL E NP    W + F V  K +DG+ +++ L +E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSVG-KVQDGEAYVKELFREQPDLA 68

Query: 165 ERVMITRLHL 175
            R+M  R H+
Sbjct: 69  LRIMTVREHI 77

[Close]

BLAST of CmaCh20G000860 vs. ExPASy TrEMBL
Match: A0A6J1JGU0 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111484377 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 1.1e-119
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR
Sbjct: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNSDSEWQLSATGHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAVK 120
           SSFVNSDSEWQLSATGHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAVK
Sbjct: 61  SSFVNSDSEWQLSATGHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 RCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF 217
           RCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF
Sbjct: 181 RCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF 216

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BLAST of CmaCh20G000860 vs. ExPASy TrEMBL
Match: A0A6J1FUS7 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448989 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.6e-110
Identity = 205/217 (94.47%), Postives = 208/217 (95.85%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MVGAL   GAPVIDS PCPCLCLDSSPVTN SLRSRGDLVLPRRSKAKSHLAVSRLVDLR
Sbjct: 1   MVGALCVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNSDSEWQLSAT-GHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120
           SSFVNS SEWQLSA+ GHRR RNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KRCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF 217
           K+CDHAEIYKEIS ENLELMRERLMETVIWPSDDKSF
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDDKSF 217

[Close]

BLAST of CmaCh20G000860 vs. ExPASy TrEMBL
Match: A0A0A0KX19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 8.2e-96
Identity = 185/214 (86.45%), Postives = 193/214 (90.19%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MVGALF VGAPV+DS P PCL  DSSPVTN SLRS GDLVL R+SKAKS+L VS+ VDLR
Sbjct: 1   MVGALFVVGAPVVDSLP-PCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60

Query: 61  SSFVNSDSEWQLSATGHRR-WRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120
           SSFVN   EWQLSA G R+  RNQRRNRRLVVVNEFAGQYE+SFDDVKMQI NYFTYKAV
Sbjct: 61  SSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFYNFVVNHKP +GKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KRCDHAEIYKEISGENLELMRERLMETVIWPSDD 214
           K+CDHAEIYK IS ENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CmaCh20G000860 vs. ExPASy TrEMBL
Match: A0A5A7TJ10 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00620 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.4e-95
Identity = 184/214 (85.98%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MVGALF VGAPVIDS P PC   DSSPVTN SLRS GDLVL R+SK KS+  VS+ VDLR
Sbjct: 1   MVGALFVVGAPVIDSPP-PCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLR 60

Query: 61  SSFVNSDSEWQLSATGHRR-WRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120
           SSFVN   EWQLSA G RR  RNQRRNRRLV+VNEFAGQYE+SFDDVKMQI NYFTYKAV
Sbjct: 61  SSFVNFGDEWQLSAGGCRRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFYNFVVNHKP +GKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KRCDHAEIYKEISGENLELMRERLMETVIWPSDD 214
           K+CDHAEIYKEIS ENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CmaCh20G000860 vs. ExPASy TrEMBL
Match: A0A5D3BAI6 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001050 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.9e-95
Identity = 183/214 (85.51%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MVGALF VGAPVIDS P PC   DSSPVTN SLRS GDLVL R+SK KS+  VS+ VDLR
Sbjct: 1   MVGALFVVGAPVIDSPP-PCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLR 60

Query: 61  SSFVNSDSEWQLSATGHRR-WRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120
           SSFVN   EWQLSA G R+  RNQRRNRRLV+VNEFAGQYE+SFDDVKMQI NYFTYKAV
Sbjct: 61  SSFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFYNFVVNHKP +GKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KRCDHAEIYKEISGENLELMRERLMETVIWPSDD 214
           K+CDHAEIYKEIS ENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CmaCh20G000860 vs. NCBI nr
Match: XP_022986709.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 439.1 bits (1128), Expect = 2.2e-119
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR
Sbjct: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNSDSEWQLSATGHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAVK 120
           SSFVNSDSEWQLSATGHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAVK
Sbjct: 61  SSFVNSDSEWQLSATGHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 RCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF 217
           RCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF
Sbjct: 181 RCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF 216

[Close]

BLAST of CmaCh20G000860 vs. NCBI nr
Match: XP_023512052.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 411.0 bits (1055), Expect = 6.4e-111
Identity = 206/217 (94.93%), Postives = 209/217 (96.31%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MVGALF  GAPVIDS PCPCLCLDSSPVTN SLRSRGDLVLPRRSKAKSHLAVSRLVDLR
Sbjct: 1   MVGALFVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNSDSEWQLSAT-GHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120
           SSFVNS SEWQLSA+ GHRR RNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KRCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF 217
           K+CDHAEIYKEIS ENLELMRERLMETVIWPSDDKSF
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDDKSF 217

[Close]

BLAST of CmaCh20G000860 vs. NCBI nr
Match: XP_022944576.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 407.9 bits (1047), Expect = 5.4e-110
Identity = 205/217 (94.47%), Postives = 208/217 (95.85%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MVGAL   GAPVIDS PCPCLCLDSSPVTN SLRSRGDLVLPRRSKAKSHLAVSRLVDLR
Sbjct: 1   MVGALCVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNSDSEWQLSAT-GHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120
           SSFVNS SEWQLSA+ GHRR RNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KRCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF 217
           K+CDHAEIYKEIS ENLELMRERLMETVIWPSDDKSF
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDDKSF 217

[Close]

BLAST of CmaCh20G000860 vs. NCBI nr
Match: KAG7010270.1 (Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 403.3 bits (1035), Expect = 1.3e-108
Identity = 203/217 (93.55%), Postives = 207/217 (95.39%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MVGAL   GAPVIDS PCPCLCLDSSPVTN SLRSRGDLVLPRRSKAKSHLAVS+LVDLR
Sbjct: 1   MVGALCVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSQLVDLR 60

Query: 61  SSFVNSDSEWQLSAT-GHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120
           SSFVNS SEWQLSA+ GHRR RNQRRN RLVVVNEFAGQYEESFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNWRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KRCDHAEIYKEISGENLELMRERLMETVIWPSDDKSF 217
           K+CDHAEIYKEIS ENLELMRERLMETVIWPSDDKSF
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDDKSF 217

[Close]

BLAST of CmaCh20G000860 vs. NCBI nr
Match: KAG6570396.1 (Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.1 bits (980), Expect = 3.2e-102
Identity = 194/207 (93.72%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MVGAL   GAPVIDS PCPCLCLDSSPVTN SLRSRGDLVLPRRSKAKSHLAVSRLVDLR
Sbjct: 1   MVGALCVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNSDSEWQLSAT-GHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120
           SSFVNS SEWQLSA+ GHRR RNQRRN RLVVVNEFAGQYEESFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNWRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KRCDHAEIYKEISGENLELMRERLMET 207
           K+CDHAEIYKEIS ENLELMRERLMET
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMET 207

[Close]

BLAST of CmaCh20G000860 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-60
Identity = 119/213 (55.87%), Postives = 149/213 (69.95%), Query Frame = 0


Query: 1   MVGALFAVGAPVIDSRPCPCLCLDSSPVTNTSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60
           MV A F VG+PV+DS   PCLCLD+   T T  R             K  L  +R ++L 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAH-TTGTIRR-------------KKILGKARNLELG 60

Query: 61  SSFVNSDSEWQLSATGHRRWRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAVK 120
           SSF  S   ++LS     R  N++  + L+V  + AG Y+++F DV+ QI+NYFTYKAV+
Sbjct: 61  SSFTGSRIVFRLSPKRVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVR 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVL+QLYEMNP QY WFYN ++ ++P DGKRF+R L KE Q+LAERVMITRLHLY KW+K
Sbjct: 121 TVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWIK 180

Query: 181 RCDHAEIYKEISGENLELMRERLMETVIWPSDD 214
           +CDH +IY+EIS ENL LMRERLMETVIWPSDD
Sbjct: 181 KCDHGKIYQEISDENLALMRERLMETVIWPSDD 199

The following BLAST results are available for this feature:

BLAST of CmaCh20G000860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	2.0e-59	55.87	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q44212	4.0e-07	42.86	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
Q8DIS6	4.0e-07	36.92	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]
O86418	2.6e-06	40.00	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]

BLAST of CmaCh20G000860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JGU0	1.1e-119	100.00	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FUS7	2.6e-110	94.47	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0KX19	8.2e-96	86.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1	[more]
A0A5A7TJ10	2.4e-95	85.98	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3BAI6	6.9e-95	85.51	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of CmaCh20G000860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986709.1	2.2e-119	100.00	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima]	[more]
XP_023512052.1	6.4e-111	94.93	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022944576.1	5.4e-110	94.47	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata]	[more]
KAG7010270.1	1.3e-108	93.55	Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. arg...	[more]
KAG6570396.1	3.2e-102	93.72	Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma s...	[more]

BLAST of CmaCh20G000860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	1.4e-60	55.87	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 92..216 e-value: 2.5E-47 score: 161.8
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 98..214
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 109..206 e-value: 4.8E-20 score: 71.9
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..215
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G000860.1	CmaCh20G000860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone