CmaCh20G000070 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G000070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein of Unknown Function (DUF239)
Location	Cma_Chr20: 17926 .. 18661 (+)
RNA-Seq Expression	CmaCh20G000070
Synteny	CmaCh20G000070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATGCAACGTGGTCTGTGGCAATAAAATAAAAATACAAGAGACTGCTTTGTGTTCAGGGGCTGTGGTTTCAGCTTCAAGTTTGGCACAGGATTCCGCTTTCTTTAATCTTTTAGAAGCATGGCAACGGCAATGGCAATGGCCATGCTGCAGACTGAGGCTCTGTTTTCTCTTTCAGCTTCAGCTACATAGTTTAGATTTTGAAATCTTCTTTTTGTGACGTTGAAGCAGAGCCCAGGTGGGGATATCATCGACTGTGTCCACATTTCTAATCAACCACCTTTTGATCATCCTTTCCTCAAACATCACAAAATTCAGGTTTGTGATTCTCAGCTGTTGCAGCTATTTCAAGTATGTCCTGAAGTTCCTTCCCACTTGTCCTCTACAAGTGTTTTCAAAGTACAAGCAAGCAGCCAAGTATTGAAAACTAGAAAACGTTTTGTTTTTGGAATTTTATTAAGAATTCAAATCATAGCAAAGAAATTGGGAGAAAACAAACGCAATTCTCAAACGGGACCTTCAATTCCACATCTTAGATCTAACATATCAGAATGTATTTGCAGAGCGATGCATATCAAGCCACAGGTTGTTATAACCTCTTCCGCTCAGGCTTTATTCAAGTTAAAAGTGAAATAGCGATGGGGGCAAGCATCTCACCATTGTCTGGGTTTCGCAGTCCCCAGTACGATATCAGTATACTTATCTGGAAGGTAAATGCCAAACCTCACTACTAG

mRNA sequence

ATGCAATGCAACGTGAGCCCAGGTGGGGATATCATCGACTGTGTCCACATTTCTAATCAACCACCTTTTGATCATCCTTTCCTCAAACATCACAAAATTCAGGTTTGTGATTCTCAGCTGTTGCAGCTATTTCAAAGCGATGCATATCAAGCCACAGGTTGTTATAACCTCTTCCGCTCAGGCTTTATTCAAGTTAAAAGTGAAATAGCGATGGGGGCAAGCATCTCACCATTGTCTGGGTTTCGCAGTCCCCAGTACGATATCAGTATACTTATCTGGAAGGTAAATGCCAAACCTCACTACTAG

Coding sequence (CDS)

ATGCAATGCAACGTGAGCCCAGGTGGGGATATCATCGACTGTGTCCACATTTCTAATCAACCACCTTTTGATCATCCTTTCCTCAAACATCACAAAATTCAGGTTTGTGATTCTCAGCTGTTGCAGCTATTTCAAAGCGATGCATATCAAGCCACAGGTTGTTATAACCTCTTCCGCTCAGGCTTTATTCAAGTTAAAAGTGAAATAGCGATGGGGGCAAGCATCTCACCATTGTCTGGGTTTCGCAGTCCCCAGTACGATATCAGTATACTTATCTGGAAGGTAAATGCCAAACCTCACTACTAG

Protein sequence

MQCNVSPGGDIIDCVHISNQPPFDHPFLKHHKIQVCDSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVNAKPHY

Homology

[Close]

BLAST of CmaCh20G000070 vs. ExPASy TrEMBL
Match: A0A6J1J6Z9 (uncharacterized protein LOC111484047 OS=Cucurbita maxima OX=3661 GN=LOC111484047 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 79/94 (84.04%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MQCNVSPGGDIIDCVHISNQPPFDHPFLKHHKIQVCDSQLLQLFQSDAYQATGCYNLFRS 60
          M   +SPGGDIIDCVHISNQPPFDHPFLKHHKI           QSDAYQATGCYNLFRS
Sbjct: 1  MATAMSPGGDIIDCVHISNQPPFDHPFLKHHKI-----------QSDAYQATGCYNLFRS 60

Query: 61 GFIQVKSEIAMGASISPLSGFRSPQYDISILIWK 95
          GFIQVKSEIAMGASISPLSGFRSPQYDISILIWK
Sbjct: 61 GFIQVKSEIAMGASISPLSGFRSPQYDISILIWK 83

[Close]

BLAST of CmaCh20G000070 vs. ExPASy TrEMBL
Match: A0A0L9UDY1 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g094200 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.1e-22
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 6   SPGGDIIDCVHISNQPPFDHPFLKHHKIQVCD---SQLLQLFQSDAYQATGCYNLFRS-G 65
           SP GDIIDCVH+S+QP  DHP LK+HKIQV           + SDAY+ATGCYNL     
Sbjct: 280 SPDGDIIDCVHVSHQPALDHPNLKNHKIQVSRELYGDNNTYWTSDAYKATGCYNLLCCYD 339

Query: 66  FIQVKSEIAMGASISPLSGFRSPQYDISILIWKVNA 98
           FIQ+ S+IA+GASISPLS + S QY ISIL+WK +A
Sbjct: 340 FIQINSDIALGASISPLSKYSSSQYHISILVWKEDA 375

[Close]

BLAST of CmaCh20G000070 vs. ExPASy TrEMBL
Match: A0A6A6MQL7 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_027663 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 65/173 (37.57%), Postives = 79/173 (45.66%), Query Frame = 0


Query: 6   SPGGDIIDCVHISNQPPFDHPFLKHHKIQV------------------------------ 65
           SP GDIIDCVH+++QP FDHPFLK HKIQ+                              
Sbjct: 5   SPDGDIIDCVHMAHQPAFDHPFLKDHKIQMRPGYHPEGLFDENKHAIAYVEGDKYYGAKA 64

Query: 66  -----------------------------------------------CDSQLLQLFQSDA 102
                                                           +++L   + SDA
Sbjct: 65  TINVWEPKIQQPNEFSLSQLWILGGSFGEDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDA 124

[Close]

BLAST of CmaCh20G000070 vs. ExPASy TrEMBL
Match: A0A166GTD8 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001978 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.6e-20
Identity = 62/151 (41.06%), Postives = 72/151 (47.68%), Query Frame = 0


Query: 6   SPGGDIIDCVHISNQPPFDHPFLKHHKIQVC----------------------------- 65
           SP GD IDC+ IS+QP FDHPFLK HKIQ                               
Sbjct: 63  SPDGDTIDCIPISHQPAFDHPFLKDHKIQHAIAYVEGDKYYGARATINVWEPKIQQANEF 122

Query: 66  ---------------------------------DSQLLQLFQSDAYQATGCYNLFRSGFI 95
                                            +++L   + SDAYQATGCYNL  SGFI
Sbjct: 123 SLSQIWVLGGSFGEDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFI 182

[Close]

BLAST of CmaCh20G000070 vs. ExPASy TrEMBL
Match: A0A6J1K8Y4 (uncharacterized protein LOC111491194 OS=Cucurbita maxima OX=3661 GN=LOC111491194 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.6e-17
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQV SEIAMGASISP+S FRSPQYDISILIWK  
Sbjct: 239 NTRLFTYWTSDAYQATGCYNLLCSGFIQVNSEIAMGASISPVSAFRSPQYDISILIWKDP 298

Query: 97  AKPHY 102
           ++ H+
Sbjct: 299 SEGHW 303

[Close]

BLAST of CmaCh20G000070 vs. NCBI nr
Match: XP_022986227.1 (uncharacterized protein LOC111484047 [Cucurbita maxima])

HSP 1 Score: 162.2 bits (409), Expect = 2.4e-36
Identity = 79/94 (84.04%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MQCNVSPGGDIIDCVHISNQPPFDHPFLKHHKIQVCDSQLLQLFQSDAYQATGCYNLFRS 60
          M   +SPGGDIIDCVHISNQPPFDHPFLKHHKI           QSDAYQATGCYNLFRS
Sbjct: 1  MATAMSPGGDIIDCVHISNQPPFDHPFLKHHKI-----------QSDAYQATGCYNLFRS 60

Query: 61 GFIQVKSEIAMGASISPLSGFRSPQYDISILIWK 95
          GFIQVKSEIAMGASISPLSGFRSPQYDISILIWK
Sbjct: 61 GFIQVKSEIAMGASISPLSGFRSPQYDISILIWK 83

[Close]

BLAST of CmaCh20G000070 vs. NCBI nr
Match: XP_012835186.1 (PREDICTED: uncharacterized protein LOC105955926 [Erythranthe guttata])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 70/163 (42.94%), Postives = 77/163 (47.24%), Query Frame = 0


Query: 6   SPGGDIIDCVHISNQPPFDHPFLKHHKIQVC----------------------------- 65
           SP GDIIDCVHIS+QP FDHPFLK HKIQ                               
Sbjct: 57  SPDGDIIDCVHISHQPAFDHPFLKDHKIQTMPEALKFADNKMSEEETTINSISQLWHMNG 116

Query: 66  --------------------------------------DSQLLQLFQSDAYQATGCYNLF 102
                                                  S L+   QSDAYQATGCYNL 
Sbjct: 117 KCPQETIPIRRTKKEDVLRATSVKRYGQSQISMEPTTPGSSLIGPLQSDAYQATGCYNLL 176

[Close]

BLAST of CmaCh20G000070 vs. NCBI nr
Match: KOM40744.1 (hypothetical protein LR48_Vigan04g094200 [Vigna angularis])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 6   SPGGDIIDCVHISNQPPFDHPFLKHHKIQVCD---SQLLQLFQSDAYQATGCYNLFRS-G 65
           SP GDIIDCVH+S+QP  DHP LK+HKIQV           + SDAY+ATGCYNL     
Sbjct: 280 SPDGDIIDCVHVSHQPALDHPNLKNHKIQVSRELYGDNNTYWTSDAYKATGCYNLLCCYD 339

Query: 66  FIQVKSEIAMGASISPLSGFRSPQYDISILIWKVNA 98
           FIQ+ S+IA+GASISPLS + S QY ISIL+WK +A
Sbjct: 340 FIQINSDIALGASISPLSKYSSSQYHISILVWKEDA 375

[Close]

BLAST of CmaCh20G000070 vs. NCBI nr
Match: KAF2314566.1 (hypothetical protein GH714_027663 [Hevea brasiliensis])

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-20
Identity = 65/173 (37.57%), Postives = 79/173 (45.66%), Query Frame = 0


Query: 6   SPGGDIIDCVHISNQPPFDHPFLKHHKIQV------------------------------ 65
           SP GDIIDCVH+++QP FDHPFLK HKIQ+                              
Sbjct: 5   SPDGDIIDCVHMAHQPAFDHPFLKDHKIQMRPGYHPEGLFDENKHAIAYVEGDKYYGAKA 64

Query: 66  -----------------------------------------------CDSQLLQLFQSDA 102
                                                           +++L   + SDA
Sbjct: 65  TINVWEPKIQQPNEFSLSQLWILGGSFGEDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDA 124

[Close]

BLAST of CmaCh20G000070 vs. NCBI nr
Match: KZN09322.1 (hypothetical protein DCAR_001978 [Daucus carota subsp. sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 62/151 (41.06%), Postives = 72/151 (47.68%), Query Frame = 0


Query: 6   SPGGDIIDCVHISNQPPFDHPFLKHHKIQVC----------------------------- 65
           SP GD IDC+ IS+QP FDHPFLK HKIQ                               
Sbjct: 63  SPDGDTIDCIPISHQPAFDHPFLKDHKIQHAIAYVEGDKYYGARATINVWEPKIQQANEF 122

Query: 66  ---------------------------------DSQLLQLFQSDAYQATGCYNLFRSGFI 95
                                            +++L   + SDAYQATGCYNL  SGFI
Sbjct: 123 SLSQIWVLGGSFGEDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFI 182

[Close]

BLAST of CmaCh20G000070 vs. TAIR 10
Match: AT5G56530.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 92.0 bits (227), Expect = 2.9e-19
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ S+IAMGASISP+SGF +PQYDISI IWK  
Sbjct: 238 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSQIAMGASISPVSGFHNPQYDISITIWKDP 297

Query: 97  AKPHY 102
            + H+
Sbjct: 298 KEGHW 302

HSP 2 Score: 59.3 bits (142), Expect = 2.1e-09
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 6  SPGGDIIDCVHISNQPPFDHPFLKHHKIQV 36
          SP GDIIDCVHIS QP FDHPFLK HKIQ+
Sbjct: 59 SPDGDIIDCVHISKQPAFDHPFLKDHKIQM 88

[Close]

BLAST of CmaCh20G000070 vs. TAIR 10
Match: AT5G56530.2 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 92.0 bits (227), Expect = 2.9e-19
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ S+IAMGASISP+SGF +PQYDISI IWK  
Sbjct: 238 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSQIAMGASISPVSGFHNPQYDISITIWKDP 297

Query: 97  AKPHY 102
            + H+
Sbjct: 298 KEGHW 302

HSP 2 Score: 59.3 bits (142), Expect = 2.1e-09
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 6  SPGGDIIDCVHISNQPPFDHPFLKHHKIQV 36
          SP GDIIDCVHIS QP FDHPFLK HKIQ+
Sbjct: 59 SPDGDIIDCVHISKQPAFDHPFLKDHKIQM 88

[Close]

BLAST of CmaCh20G000070 vs. TAIR 10
Match: AT1G55360.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-19
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ S+IAMGASISP+SG+R+ QYDISILIWK  
Sbjct: 240 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDISILIWKDP 299

Query: 97  AKPHY 102
            + H+
Sbjct: 300 KEGHW 304

HSP 2 Score: 52.0 bits (123), Expect = 3.3e-07
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 6  SPGGDIIDCVHISNQPPFDHPFLKHHKIQV 36
          S  GD+IDCV IS QP FDHPFLK HKIQ+
Sbjct: 60 SSDGDVIDCVPISKQPAFDHPFLKDHKIQM 89

[Close]

BLAST of CmaCh20G000070 vs. TAIR 10
Match: AT3G13510.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-19
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 37  DSQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVN 96
           +++L   + SDAYQATGCYNL  SGFIQ+ S+IAMGASISP+SG+R+ QYDISILIWK  
Sbjct: 237 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDISILIWKDP 296

Query: 97  AKPHY 102
            + H+
Sbjct: 297 KEGHW 301

HSP 2 Score: 55.1 bits (131), Expect = 3.9e-08
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 6  SPGGDIIDCVHISNQPPFDHPFLKHHKIQV 36
          SP GDIIDC+ IS QP FDHPFLK HKIQ+
Sbjct: 58 SPDGDIIDCIPISKQPAFDHPFLKDHKIQM 87

[Close]

BLAST of CmaCh20G000070 vs. TAIR 10
Match: AT2G44210.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-16
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 38  SQLLQLFQSDAYQATGCYNLFRSGFIQVKSEIAMGASISPLSGFRSPQYDISILIWKVNA 97
           ++L   + SDAYQ TGCYNL  SGF+Q+  EIAMG SISPLS + + QYDI+ILIWK   
Sbjct: 233 TRLFTYWTSDAYQGTGCYNLLCSGFVQINREIAMGGSISPLSNYGNSQYDITILIWKDPK 292

Query: 98  KPHY 102
           + H+
Sbjct: 293 EGHW 296

HSP 2 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 6  SPGGDIIDCVHISNQPPFDHPFLKHHKIQVCDS 39
          SP GD+IDCV I++QP F HP L +H +Q+  S
Sbjct: 51 SPDGDMIDCVPITDQPAFAHPLLINHTVQMWPS 83

The following BLAST results are available for this feature:

BLAST of CmaCh20G000070 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh20G000070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6Z9	1.2e-36	84.04	uncharacterized protein LOC111484047 OS=Cucurbita maxima OX=3661 GN=LOC111484047...	[more]
A0A0L9UDY1	8.1e-22	60.42	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g094200 PE...	[more]
A0A6A6MQL7	1.2e-20	37.57	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_027663 PE=4 SV=1	[more]
A0A166GTD8	7.6e-20	41.06	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001978 ...	[more]
A0A6J1K8Y4	4.6e-17	70.77	uncharacterized protein LOC111491194 OS=Cucurbita maxima OX=3661 GN=LOC111491194...	[more]

Pages

BLAST of CmaCh20G000070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986227.1	2.4e-36	84.04	uncharacterized protein LOC111484047 [Cucurbita maxima]	[more]
XP_012835186.1	1.2e-22	42.94	PREDICTED: uncharacterized protein LOC105955926 [Erythranthe guttata]	[more]
KOM40744.1	1.7e-21	60.42	hypothetical protein LR48_Vigan04g094200 [Vigna angularis]	[more]
KAF2314566.1	2.4e-20	37.57	hypothetical protein GH714_027663 [Hevea brasiliensis]	[more]
KZN09322.1	1.6e-19	41.06	hypothetical protein DCAR_001978 [Daucus carota subsp. sativus]	[more]

BLAST of CmaCh20G000070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56530.1	2.9e-19	64.62	Protein of Unknown Function (DUF239)	[more]
AT5G56530.2	2.9e-19	64.62	Protein of Unknown Function (DUF239)	[more]
AT1G55360.1	3.7e-19	64.62	Protein of Unknown Function (DUF239)	[more]
AT3G13510.1	3.7e-19	64.62	Protein of Unknown Function (DUF239)	[more]
AT2G44210.1	3.0e-16	57.81	Protein of Unknown Function (DUF239)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025521	Neprosin activation peptide	PFAM	PF14365	Neprosin_AP	coord: 6..41 e-value: 1.1E-12 score: 48.4
IPR004314	Neprosin	PFAM	PF03080	Neprosin	coord: 41..96 e-value: 1.5E-13 score: 50.6
None	No IPR available	PANTHER	PTHR31589:SF126	SIMILARITY TO CARBOXYL-TERMINAL PROTEINASE	coord: 6..40 coord: 39..100
None	No IPR available	PANTHER	PTHR31589	PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED	coord: 6..40 coord: 39..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G000070.1	CmaCh20G000070.1	mRNA