CmaCh19G011120 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G011120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr19: 9166293 .. 9166875 (+)
RNA-Seq Expression	CmaCh19G011120
Synteny	CmaCh19G011120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGAAGGCCACAACTTTGCATTTGACATGCTTTGGTTGCTGCCGTTTCTGTTCAACCATGCACTTCAATTGCCTTTTGTGCACACGGAATCTTTTCTGGATTATTCCAAGCACACCTTTTCTTGGTCGGTGGGAGCTGAGGTAAGGCATCACGGGGGATTGGATGGGGCACGAGCTTGAATGGTATTTTGTTATTCATGTGAATCAATTAAAGTTTAAATATTTGATAGAATTATAATTGTAATAATTTTAATTCAGGCTTTACTGGGAATAAACAGAAAGGAAGGCAAATGAAAAAGAAAAACAAGCGTTTCATACCCCTGGGATTTTAGGAAGACCACAGAGAGACGAGACCACCACTTCCACTCCCACGGTATTCGCTTCACCCCATGGAACTCCCACAAATAGGTCTAAATCCCAACCCGTATACCCCGCCCCTGATCTTCGCTCCTCACCACGTGTCCGCTTCCTTTTCCATTTTCCTTCTATAAAACCTTCCTCCTGCCCTCCCCATTTCCTCCGTACTTTGCTTTGCCTCACTCTACACCACTTTTCTAATTTCTCATCCTATTCCTCGTAA

mRNA sequence

ATGAACGAAGGCCACAACTTTGCATTTGACATGCTTTGGTTGCTGCCGTTTCTGTTCAACCATGCACTTCAATTGCCTTTTGTGCACACGGAATCTTTTCTGGATTATTCCAAGCACACCTTTTCTTGGTCGGTGGGAGCTGAGAGAGACGAGACCACCACTTCCACTCCCACGGTATTCGCTTCACCCCATGGAACTCCCACAAATAGGTCTAAATCCCAACCCGTATACCCCGCCCCTGATCTTCGCTCCTCACCACGTGTCCGCTTCCTTTTCCATTTTCCTTCTATAAAACCTTCCTCCTGCCCTCCCCATTTCCTCCGTACTTTGCTTTGCCTCACTCTACACCACTTTTCTAATTTCTCATCCTATTCCTCGTAA

Coding sequence (CDS)

ATGAACGAAGGCCACAACTTTGCATTTGACATGCTTTGGTTGCTGCCGTTTCTGTTCAACCATGCACTTCAATTGCCTTTTGTGCACACGGAATCTTTTCTGGATTATTCCAAGCACACCTTTTCTTGGTCGGTGGGAGCTGAGAGAGACGAGACCACCACTTCCACTCCCACGGTATTCGCTTCACCCCATGGAACTCCCACAAATAGGTCTAAATCCCAACCCGTATACCCCGCCCCTGATCTTCGCTCCTCACCACGTGTCCGCTTCCTTTTCCATTTTCCTTCTATAAAACCTTCCTCCTGCCCTCCCCATTTCCTCCGTACTTTGCTTTGCCTCACTCTACACCACTTTTCTAATTTCTCATCCTATTCCTCGTAA

Protein sequence

MNEGHNFAFDMLWLLPFLFNHALQLPFVHTESFLDYSKHTFSWSVGAERDETTTSTPTVFASPHGTPTNRSKSQPVYPAPDLRSSPRVRFLFHFPSIKPSSCPPHFLRTLLCLTLHHFSNFSSYSS

Homology

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BLAST of CmaCh19G011120 vs. NCBI nr
Match: KAG6572479.1 (Phosphoglycerate kinase 3, cytosolic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 9.4e-30
Identity = 79/127 (62.20%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 1   MNEGHNFAFDMLWLLPFLFNHALQLPFVHTESFLD-YSKHTFSWSVGAERDETTTSTPTV 60
           MNEGHNFAFD+LWLLPF F H   + F     F   +  H F   VG E           
Sbjct: 1   MNEGHNFAFDLLWLLPFPFIHCTSIAFCAHGIFSGLFQAHLF--LVGGEL---------- 60

Query: 61  FASPHGTPTNRSKSQPVYPAPDLRSSPRVRFLFHFPSIKPSSCPPHFLRTLLCLTLHHFS 120
                     RSKSQPVYPA DLRSSPRVRFLFHFPSIK SSCPPHFLRT LCLTLHHFS
Sbjct: 61  ----------RSKSQPVYPAADLRSSPRVRFLFHFPSIKSSSCPPHFLRTSLCLTLHHFS 105

Query: 121 NFSSYSS 127
           NFSSYSS
Sbjct: 121 NFSSYSS 105

The following BLAST results are available for this feature:

BLAST of CmaCh19G011120 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G011120 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G011120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572479.1	9.4e-30	62.20	Phosphoglycerate kinase 3, cytosolic, partial [Cucurbita argyrosperma subsp. sor...	[more]

BLAST of CmaCh19G011120 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G011120.1	CmaCh19G011120.1	mRNA