CmaCh19G009460 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G009460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Actin cytoskeleton-regulatory complex protein
Location	Cma_Chr19: 8419417 .. 8419722 (+)
RNA-Seq Expression	CmaCh19G009460
Synteny	CmaCh19G009460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAAAATTTCCCTTCTTTGCCTCATTCTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGACTGCCACAACCACGACTCGCCATGTGTCGGCGGCCCCGGAGCCATCGGAGACCGGCAACGTAGAAGGGCCTGGACTGGCGGAGGCGCCGGAGATCCGACGCCTGGGAAAGCACCACAGTGATAAGTCCGTGGCCGGCGGGGGAGTCATCATTGGCGGCCTTGTTACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGCTCATTGA

mRNA sequence

ATGCCCAAAATTTCCCTTCTTTGCCTCATTCTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGACTGCCACAACCACGACTCGCCATGTGTCGGCGGCCCCGGAGCCATCGGAGACCGGCAACGTAGAAGGGCCTGGACTGGCGGAGGCGCCGGAGATCCGACGCCTGGGAAAGCACCACAGTGATAAGTCCGTGGCCGGCGGGGGAGTCATCATTGGCGGCCTTGTTACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGCTCATTGA

Coding sequence (CDS)

ATGCCCAAAATTTCCCTTCTTTGCCTCATTCTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGACTGCCACAACCACGACTCGCCATGTGTCGGCGGCCCCGGAGCCATCGGAGACCGGCAACGTAGAAGGGCCTGGACTGGCGGAGGCGCCGGAGATCCGACGCCTGGGAAAGCACCACAGTGATAAGTCCGTGGCCGGCGGGGGAGTCATCATTGGCGGCCTTGTTACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGCTCATTGA

Protein sequence

MPKISLLCLILAEILLIQAMASTATTTTRHVSAAPEPSETGNVEGPGLAEAPEIRRLGKHHSDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSAH

Homology

[Close]

BLAST of CmaCh19G009460 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.7e-32
Identity = 78/96 (81.25%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 6   LLCLILAEILLIQAMASTATTTTRHVSAAPEPSETGNVEGPGLAEAPEIRRLGKHHSDKS 65
           L CLI+AEILLIQAM S ATTT   +SAAPEP+E G  EG  +AEAPEIRRLGKHH DKS
Sbjct: 7   LFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGKHHGDKS 66

Query: 66  VAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSAH 102
           VAGGGVIIGGLVTA+FAAVFCYIRVTRKRDGVDS H
Sbjct: 67  VAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVH 102

[Close]

BLAST of CmaCh19G009460 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 78/103 (75.73%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 1   MPKISLL-CLILAEILLIQAM-ASTATTTTRHVSAAPEPSETGNVEGPGLAEAPEIRRLG 60
           M KI LL CLI+ EI LIQA+  S ATTT   +S APE SE G  EG  +AEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHSDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSAH 102
           KHH DKS+AGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDS H
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of CmaCh19G009460 vs. ExPASy TrEMBL
Match: A0A2R6QCD3 (Actin cytoskeleton-regulatory complex protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19050 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 63/105 (60.00%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 1   MPKISLLCLILAEILLIQAMA--STATTTTRHVSAAPEPSETGNVE-------GPGLAEA 60
           M +  L CL+LA ILL+QAMA  S         + A  P+ TG+VE       G  +AEA
Sbjct: 1   MSRFLLTCLVLAHILLVQAMAIRSDPRKILESHTIADPPASTGSVESASDGETGSSVAEA 60

Query: 61  PEIRRLGKHH-SDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRD 96
           PEI RLGKHH SDKSVAGGGVIIGGL TA+FAAV+CYIRVTR+RD
Sbjct: 61  PEIGRLGKHHSSDKSVAGGGVIIGGLATAIFAAVYCYIRVTRRRD 105

[Close]

BLAST of CmaCh19G009460 vs. ExPASy TrEMBL
Match: A0A2N9IXN3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.2e-18
Identity = 63/120 (52.50%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 1   MPKISLLCLILAEILLIQAMAS-----------------------TATTTTRHVSAAPEP 60
           M ++ L CLILAEIL++QAMA                         A    + VS+  E 
Sbjct: 1   MGRLGLFCLILAEILVVQAMAEKSEGSELNPFGLKAQNKNGALGVVARVADQPVSSIAES 60

Query: 61  SETGNVEGPGLAEAPEIRRLGKHHSDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGV 98
            E  + E   +AEAP IRR+GKHHSDKS+AGGGVIIGGL TA+FA VFCYIRVTRKRDGV
Sbjct: 61  PE--SKEYSDVAEAPVIRRMGKHHSDKSLAGGGVIIGGLATAIFAVVFCYIRVTRKRDGV 118

[Close]

BLAST of CmaCh19G009460 vs. ExPASy TrEMBL
Match: A5BAN6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.1e-18
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1  MPKISLLCLILAEILLIQAMA--STATTTTRHVSAAPEPSETGNVEGPGLAEAPEIRRLG 60
          M ++ L+CL+LAEIL++QA+A  S        V  A +PS  G  E   +AEAP  RRLG
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLEVAEAPANRRLG 60

Query: 61 KHHSDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKR 95
          KHH D+S+AGGGVIIGGL TA+FAAVFCYIR+TR+R
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRRR 96

[Close]

BLAST of CmaCh19G009460 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MPKISLLCLILAEILLIQAMASTATTTTRHVSAAPEPSETGNVEGPGLAEAPEIRRLGKH 60
           M KISLLCLILA+ILLIQAMASTATTTT HVSAAPEPSET NVEGPGLAEAPEIRRLGKH
Sbjct: 1   MAKISLLCLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGKH 60

Query: 61  HSDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSAH 102
           H DKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDS H
Sbjct: 61  HVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 101

[Close]

BLAST of CmaCh19G009460 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 94/101 (93.07%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MPKISLLCLILAEILLIQAMASTATTTTRHVSAAPEPSETGNVEGPGLAEAPEIRRLGKH 60
           M KISLL LILA+ILLIQAMASTATTTT HVSAAPEPSET NVEGPGLAEAPEIRRLGKH
Sbjct: 1   MAKISLLSLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGKH 60

Query: 61  HSDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSAH 102
           H DKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDS H
Sbjct: 61  HVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 101

[Close]

BLAST of CmaCh19G009460 vs. NCBI nr
Match: KAA0031619.1 (hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK07071.1 hypothetical protein E5676_scaffold13G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 3.6e-32
Identity = 78/96 (81.25%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 6   LLCLILAEILLIQAMASTATTTTRHVSAAPEPSETGNVEGPGLAEAPEIRRLGKHHSDKS 65
           L CLI+AEILLIQAM S ATTT   +SAAPEP+E G  EG  +AEAPEIRRLGKHH DKS
Sbjct: 7   LFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGKHHGDKS 66

Query: 66  VAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSAH 102
           VAGGGVIIGGLVTA+FAAVFCYIRVTRKRDGVDS H
Sbjct: 67  VAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVH 102

[Close]

BLAST of CmaCh19G009460 vs. NCBI nr
Match: KAE8645753.1 (hypothetical protein Csa_020263 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-21
Identity = 67/91 (73.63%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1  MPKISLL-CLILAEILLIQAM-ASTATTTTRHVSAAPEPSETGNVEGPGLAEAPEIRRLG 60
          M KI LL CLI+ EI LIQA+  S ATTT   +S APE SE G  EG  +AEAPEIRRLG
Sbjct: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61 KHHSDKSVAGGGVIIGGLVTAVFAAVFCYIR 90
          KHH DKS+AGGGVIIGGLVTAVFAAVFCYIR
Sbjct: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

[Close]

BLAST of CmaCh19G009460 vs. NCBI nr
Match: KAF3964431.1 (hypothetical protein CMV_011281 [Castanea mollissima])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 67/122 (54.92%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 1   MPKISLLC--LILAEILLIQAMAS-----------------------TATTTTRHVSAAP 60
           M ++ L C  +ILAEIL++QAMA                         A    + VS+  
Sbjct: 70  MGRLGLFCFMVILAEILVVQAMAGKSEGSELNPFGLKAQHKVGTLRVVARLADQPVSSVA 129

Query: 61  EPSETGNVEGPGLAEAPEIRRLGKHHSDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRD 98
           E  E GN E   +AEAP IRRLGKHHSDKSVAGGGVIIGGLVTA+FAAVFCYIRVTRKRD
Sbjct: 130 ESPE-GNKENSNVAEAPVIRRLGKHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRD 189

[Close]

BLAST of CmaCh19G009460 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-09
Identity = 39/91 (42.86%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 6  LLCLILAEILLIQAMASTA-TTTTRHVSAAPEPSETGNVEGPGLAEAPEIRRLGKHHS-- 65
          +LC +L  +  + A +S A    TR +     P E    E P ++   E  R G HHS  
Sbjct: 7  VLCFLLTYVFSMAAASSEAEPPATRKLGRHEWPGE--EAEAPEVSHLEETVRRGHHHSTV 66

Query: 66 DKSVAGGGVIIGGLVTAVFAAVFCYIRVTRK 94
          ++SVAGGGVI+GGL T     VFCYIR TRK
Sbjct: 67 ERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:

BLAST of CmaCh19G009460 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G009460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C590	1.7e-32	81.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K3N0	1.2e-28	75.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]
A0A2R6QCD3	1.1e-18	60.00	Actin cytoskeleton-regulatory complex protein OS=Actinidia chinensis var. chinen...	[more]
A0A2N9IXN3	4.2e-18	52.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1	[more]
A5BAN6	7.1e-18	58.33	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1	[more]

BLAST of CmaCh19G009460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572323.1	1.1e-41	94.06	hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011935.1	1.6e-40	93.07	hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0031619.1	3.6e-32	81.25	hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK070...	[more]
KAE8645753.1	2.9e-21	73.63	hypothetical protein Csa_020263 [Cucumis sativus]	[more]
KAF3964431.1	1.7e-18	54.92	hypothetical protein CMV_011281 [Castanea mollissima]	[more]

BLAST of CmaCh19G009460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	4.6e-09	42.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..51
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 1..99
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G009460.1	CmaCh19G009460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane