CmaCh19G008690 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G008690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr19: 8068029 .. 8068352 (+)
RNA-Seq ExpressionCmaCh19G008690
SyntenyCmaCh19G008690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGATGGGTAGGCATAGTGGTGAACCCACCATGGTTGGTACCTCCATAGCTTTGTTACAAGAAAGGTTCAGGCAGTTGCAGAAAGAGAAGGTAAGGAGGGAGAAGGAGGTTGTTAAGCTGTTATCCGGTTCAAATATCTTGTCAACCTCAAGAGACTTGGCCTTCAATTCCCTCTCACTTGGCCTGAATTTGGCTAATGCGGGTAAGCAAGTTGATAGCCATGAAGGCAGGTTGATGCCTGGTGACACCCAGTTGATACCCATTACGTTCAGAAGTTTTGATACTCCAGATGTTGATGTTGATACCACCCTTCATCTATAG

mRNA sequence

ATGCAGATGGGTAGGCATAGTGGTGAACCCACCATGGTTGGTACCTCCATAGCTTTGTTACAAGAAAGGTTCAGGCAGTTGCAGAAAGAGAAGGTAAGGAGGGAGAAGGAGGTTGTTAAGCTGTTATCCGGTTCAAATATCTTGTCAACCTCAAGAGACTTGGCCTTCAATTCCCTCTCACTTGGCCTGAATTTGGCTAATGCGGGTAAGCAAGTTGATAGCCATGAAGGCAGGTTGATGCCTGGTGACACCCAGTTGATACCCATTACGTTCAGAAGTTTTGATACTCCAGATGTTGATGTTGATACCACCCTTCATCTATAG

Coding sequence (CDS)

ATGCAGATGGGTAGGCATAGTGGTGAACCCACCATGGTTGGTACCTCCATAGCTTTGTTACAAGAAAGGTTCAGGCAGTTGCAGAAAGAGAAGGTAAGGAGGGAGAAGGAGGTTGTTAAGCTGTTATCCGGTTCAAATATCTTGTCAACCTCAAGAGACTTGGCCTTCAATTCCCTCTCACTTGGCCTGAATTTGGCTAATGCGGGTAAGCAAGTTGATAGCCATGAAGGCAGGTTGATGCCTGGTGACACCCAGTTGATACCCATTACGTTCAGAAGTTTTGATACTCCAGATGTTGATGTTGATACCACCCTTCATCTATAG

Protein sequence

MQMGRHSGEPTMVGTSIALLQERFRQLQKEKVRREKEVVKLLSGSNILSTSRDLAFNSLSLGLNLANAGKQVDSHEGRLMPGDTQLIPITFRSFDTPDVDVDTTLHL
Homology
BLAST of CmaCh19G008690 vs. ExPASy TrEMBL
Match: A0A0A0K617 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.6e-23
Identity = 79/127 (62.20%), Postives = 87/127 (68.50%), Query Frame = 0

Query: 3   MGRHSGEPTMVGTSIALLQERFRQLQKEKVRRE-KEVVKLLSGSNIL------------S 62
           MGRH+ EPTMVGTSIALLQERFRQLQK K RRE KE++ LL  SN +            S
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 63  TSRDLAFNSLSLGLNLA-NAGKQV--DSHEGRLMPGDTQ------LIPITFRSFDTPDVD 108
           TSRDL  NSLSLGLNL  NAGKQV  D HE R MPGDT+       +  TFRSFD+P  +
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSP--N 120

BLAST of CmaCh19G008690 vs. ExPASy TrEMBL
Match: A0A5D3E685 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00780 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.8e-18
Identity = 72/129 (55.81%), Postives = 79/129 (61.24%), Query Frame = 0

Query: 3   MGRHSGEPTMVGTSIALLQERFRQLQKEKVRRE-KEVVKLLSGSNILSTS---------- 62
           MGRH  EPTMVGTSIALLQERFRQLQK K +RE KE++ LL  SN +  S          
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 63  ----RDLAFNSLSLGLNLA-NAGKQV--DSHEGRLMPGDTQLIP------ITFRSFDTPD 108
               R L  NSLSLGLNL  N GKQV  D HE R +P DT+  P       T RSFDT  
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-- 120

BLAST of CmaCh19G008690 vs. ExPASy TrEMBL
Match: G7KEN3 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 0

Query: 3   MGRHSGEPTMVGTSIALLQERFRQLQKEKVRRE-KEVVKLLSGSN---------ILSTSR 62
           MGR   +PTMV +SIALLQERFRQL+K K RRE K++++LLS  N         ++  +R
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRLVVPNNR 60

Query: 63  DLAFNSLSLGLNLANAGKQVDSHEGRLMPGDTQLIP------ITFRSFDTPDVDVDTTLH 108
               +SLSLGLNL +  KQ D      M  +T L P       T R+FDT   DVDT+LH
Sbjct: 61  QTHHDSLSLGLNLTS--KQGDK---STMKSNTSLSPWSQGASSTSRNFDTS--DVDTSLH 114

BLAST of CmaCh19G008690 vs. ExPASy TrEMBL
Match: A0A1S2XNR8 (uncharacterized protein LOC101505296 OS=Cicer arietinum OX=3827 GN=LOC101505296 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 57/120 (47.50%), Postives = 69/120 (57.50%), Query Frame = 0

Query: 3   MGRHSGEPTMVGTSIALLQERFRQLQKEKVRRE-KEVVKLLSGSNILSTSRDLAFN---- 62
           MG    +PTMV +SIALLQERFRQL+K K RRE K++V+LLS  N     R +  N    
Sbjct: 1   MGGQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLVRLLSSQNNTIQQRLVDPNHRPL 60

Query: 63  ----SLSLGLNLANAGKQVDSHEGRLMPGDTQLIP------ITFRSFDTPDVDVDTTLHL 108
               SLSLGLNL N  KQ D H+  +    + L P       T R+FD    DVDT+LHL
Sbjct: 61  YDHDSLSLGLNLTN--KQSD-HQNNMKLSSSSLSPWSQGESSTSRNFDNYS-DVDTSLHL 116

BLAST of CmaCh19G008690 vs. ExPASy TrEMBL
Match: A0A392N8A5 (Uncharacterized protein OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.9e-09
Identity = 57/121 (47.11%), Postives = 70/121 (57.85%), Query Frame = 0

Query: 3   MGRHSGEPTMVGTSIALLQERFRQLQKEKVRRE-KEVVKLLSGSNILSTS---------R 62
           MGR   +PTMV +SIALLQERFRQL+K K RRE K+++ LLS  +  STS         R
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLTLLSSESNTSTSQQRLVVPNNR 60

Query: 63  DLAFNSLSLGLNLANAGKQVDSHEGRLMPGDTQLI------PITFRSFDTPDVDVDTTLH 108
               +SLSLGLNL +  KQ D +    M   T L         T R+FDT   +VDT+LH
Sbjct: 61  QTHHDSLSLGLNLTS--KQGDMN---TMKSSTSLSSWPHGGSSTSRNFDTS--EVDTSLH 114

BLAST of CmaCh19G008690 vs. NCBI nr
Match: KAG6572236.1 (hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 4.1e-42
Identity = 98/110 (89.09%), Postives = 101/110 (91.82%), Query Frame = 0

Query: 1   MQMGRHSGEPTMVGTSIALLQERFRQLQKEKVRRE-KEVVKLLSGSNILSTSRDLAFNSL 60
           MQM RHS EP +VGTSIALLQERFRQLQKEKVRRE KEVVKLLS SN LSTSRDLAFNSL
Sbjct: 1   MQMSRHSSEPAIVGTSIALLQERFRQLQKEKVRREKKEVVKLLSDSNSLSTSRDLAFNSL 60

Query: 61  SLGLNLANAGKQVDSHEGRLMPGDTQLIPITFRSFDTPD--VDVDTTLHL 108
           SLGLNL NAGKQVDSHEGRLMPGDT+LIPITFRS+DTPD  VDVDTTLHL
Sbjct: 61  SLGLNLGNAGKQVDSHEGRLMPGDTKLIPITFRSYDTPDVVVDVDTTLHL 110

BLAST of CmaCh19G008690 vs. NCBI nr
Match: KAE8646145.1 (hypothetical protein Csa_016195, partial [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 9.1e-18
Identity = 65/99 (65.66%), Postives = 70/99 (70.71%), Query Frame = 0

Query: 3  MGRHSGEPTMVGTSIALLQERFRQLQKEKVRRE-KEVVKLLSGSNIL------------S 62
          MGRH+ EPTMVGTSIALLQERFRQLQK K RRE KE++ LL  SN +            S
Sbjct: 1  MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 63 TSRDLAFNSLSLGLNLA-NAGKQV--DSHEGRLMPGDTQ 86
          TSRDL  NSLSLGLNL  NAGKQV  D HE R MPGDT+
Sbjct: 61 TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTK 99

BLAST of CmaCh19G008690 vs. NCBI nr
Match: KAA0048752.1 (hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583.1 hypothetical protein E5676_scaffold172G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 72/129 (55.81%), Postives = 79/129 (61.24%), Query Frame = 0

Query: 3   MGRHSGEPTMVGTSIALLQERFRQLQKEKVRRE-KEVVKLLSGSNILSTS---------- 62
           MGRH  EPTMVGTSIALLQERFRQLQK K +RE KE++ LL  SN +  S          
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 63  ----RDLAFNSLSLGLNLA-NAGKQV--DSHEGRLMPGDTQLIP------ITFRSFDTPD 108
               R L  NSLSLGLNL  N GKQV  D HE R +P DT+  P       T RSFDT  
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-- 120

BLAST of CmaCh19G008690 vs. NCBI nr
Match: KAG6589104.1 (hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 0

Query: 3  MGRHSGEPTMVGTSIALLQERFRQLQKEKVRRE-KEVVKLLSGSNILST----------- 62
          MGRHS E TM+GTSIALLQERFRQLQK+K RRE KE++ LLS SN ++T           
Sbjct: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60

Query: 63 --SRDLAFNSLSLGLNLANAGKQVDSHEGRLM 81
            SRDL  +SLSLGLN ++AGKQVD HE R +
Sbjct: 61 SNSRDLNPDSLSLGLNSSSAGKQVDIHEARAL 92

BLAST of CmaCh19G008690 vs. NCBI nr
Match: XP_003617949.1 (uncharacterized protein LOC11418701 [Medicago truncatula] >AET00908.1 hypothetical protein MTR_5g097300 [Medicago truncatula] >RHN58110.1 hypothetical protein MtrunA17_Chr5g0447571 [Medicago truncatula])

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 0

Query: 3   MGRHSGEPTMVGTSIALLQERFRQLQKEKVRRE-KEVVKLLSGSN---------ILSTSR 62
           MGR   +PTMV +SIALLQERFRQL+K K RRE K++++LLS  N         ++  +R
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRLVVPNNR 60

Query: 63  DLAFNSLSLGLNLANAGKQVDSHEGRLMPGDTQLIP------ITFRSFDTPDVDVDTTLH 108
               +SLSLGLNL +  KQ D      M  +T L P       T R+FDT   DVDT+LH
Sbjct: 61  QTHHDSLSLGLNLTS--KQGDK---STMKSNTSLSPWSQGASSTSRNFDTS--DVDTSLH 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6174.6e-2362.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1[more]
A0A5D3E6855.8e-1855.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
G7KEN31.5e-1047.11Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1[more]
A0A1S2XNR81.7e-0947.50uncharacterized protein LOC101505296 OS=Cicer arietinum OX=3827 GN=LOC101505296 ... [more]
A0A392N8A54.9e-0947.11Uncharacterized protein OS=Trifolium medium OX=97028 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6572236.14.1e-4289.09hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646145.19.1e-1865.66hypothetical protein Csa_016195, partial [Cucumis sativus][more]
KAA0048752.11.2e-1755.81hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583... [more]
KAG6589104.11.5e-1560.87hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_003617949.13.1e-1047.11uncharacterized protein LOC11418701 [Medicago truncatula] >AET00908.1 hypothetic... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 17..37
NoneNo IPR availablePANTHERPTHR34570:SF12EXPRESSED PROTEINcoord: 3..45
NoneNo IPR availablePANTHERPTHR34570OS03G0593100 PROTEINcoord: 3..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G008690.1CmaCh19G008690.1mRNA