CmaCh19G008280 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G008280
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	AP complex subunit sigma
Location	Cma_Chr19: 7870048 .. 7872473 (+)
RNA-Seq Expression	CmaCh19G008280
Synteny	CmaCh19G008280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCTGAACAAAATATATTTACAGCAGAACGACGGAGGAGAAACTGTACTCTGATCGGAGAGATCGAATTTTGGAATCGAGATCTTTGGTTCCTGAAAGTTCAGAGCAAAATGGTATGTGATTATATTGCTTTGATTCATTTCTAGATTTTGATTATTTCAAGGTTGAAATTGCGTTGTTCAATGCATTATAGTCTTTCTCATCGTGGATCTGCTTTGCTCTTTCTTTGTGGGATGGTTTAATTGTTTCCTCTTTTTCTGAATTTTTTTTTCGCTCTTAGGATCGATTTTGAGTGCTTTTGGTGTTGTTAAGATTCAGATCTTTGCTTAGCCGACATCCGATTGCCCAATTTTCGTTTCGGTTTGTTCTTGGATTCGTCGTGCTCGTTCGTTTGTGGCTGTATAGCATCTGGAATTTCAGGAATAGTTCTGTAATCTTGGGGTTTGGATTTAGTCTTGCTAGGTGGTTTGGGATTGTAATCGTGGTCCGTCCTAACTCCCTCATTTGGTTGTGCCTCCCTTAGGCGGAGCTGTTTCTTCTCTATTGAGCTAGCAGTAGAATCCGCACTTCTCCAGAGTGGTGGAGTGGTGATTCTTGTTTCATTTCTTTTGTTCTCGAGCTTGTGAGTTTGTTTAAGCCATGAGTTCCTGAATCTTTTTCTTGCCTCTTCCCAACGACTTTTGTAAATTATCCAAAAATTATTATTGTGGATTGGAGCCCCTTTTTGTTGAGATAGTTGTTTGGCATCTTTGGTCTGGGGTGTTTCTTGTATGCTCGTTAGCTTTAGCTTTTCCTTTTGTAGTGTTTCATTTTTTTTTTTTTCCTCAATGAAAGCGTGGTTTTTTCTCATAAAATAATTCTCTCTTCCTTGGAGCGACTTAAGTTTAGTGTTTATATCTTCAAATCTTCGTTTCCCCACACAAGAAAAGACGGCTTGATCTTATATCTTACATGGTGTTCTAACTGATGTTGTTGGTGTAAATTTCCAGATTCACTTTGTGCTTCTTATAAGCAGACAAGGAAAAGTGAGGTTGACGAAATGGTATTCTCCTTATACTCAGAAGGAGAGATCCAAGGTAAGTCAGCTATTTGCCTCATTCTGTAATTTAATGCTAACAGGTTCTTTTAATTTCCAGCAATGATAATATTTGCAATTTCTTGTTTGCTTTCCACACGCCCACAAGTTTATTTGCTTTAATAAGTCTTAGTTCCCCTAGGATCTATTGGTCTTACCACATTATGACATGTGCTTGTGTCTGCTCATGTTCTTTAAAAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTCTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTATATAAAAGGTACGTCATGGTGTATTGATGTGTTCTGCAATCCAAATCTTTAATTTGTCCATGTTGCCCGGTCTAAGATAATTAATAATTTTACTGCTCGTCTAATGCAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGGTCCTTGAATGTATTCATCATTTCGTTGAGATTTTGGACCGTTACTTTGGCAGTGTAAGTGAATTAAATTTTAGTTCGTAAGTTGTTCAAGAATATTCTTTTTGCACCATCTCTTTAACTGACATTTAGTTTCTTCATTATTATGGTCTTTCATTTATGTTTGTAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGTATTATTTACTTGCATATATAAAAGCTGCACCTTTCTTTAATTAGCAATCCATTGCCTCTGGCCTGCCAGACATTGGTACTTTGTGTATCCGATGCATCTGAATTACATACACTCAGCTTCACACCAGTTAACTTCTCTTGAGTAGACGTTTATGTCCTTTATATGAAATTTTGAATGTGTTGTTTATTTAAACATTGAAGGCCTATTATATACTGGATGAGCTTCTAATAGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGTACTCTTCTTTATCTTTGCAGTACCTTAGTTATGATTTCAATTCAGCTGATGATAAGGTAATTGATATTCCATTGTAGGATTCGTTGGTGGAGACAGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCGCAGGCCACCAAGTAGGAACACTTCAGTGTATGTTTCAGTTTTTTGGTGAATTGAGTTGTTCTGAAACATTGTAATTATATGTTATCTGGACTTGTATCATACAAGTGAATGCCTTGTTTTTGCTTATTTTCATTTGTAGAATTACACAAATTGTTGGTGTTCTAGTGATTTCACCTGCCTGGTTAAATGTCTGCTGGATTGTTCTATTGTTGATCACAAATACAAACGTTATTGCTTGCTATGCTAGAAGTGTTCGTTCTCTGTTTCTTA

mRNA sequence

ATGAATTCTGAACAAAATATATTTACAGCAGAACGACGGAGGAGAAACTGTACTCTGATCGGAGAGATCGAATTTTGGAATCGAGATCTTTGGTTCCTGAAAGTTCAGAGCAAAATGATTCACTTTGTGCTTCTTATAAGCAGACAAGGAAAAGTGAGGTTGACGAAATGGTATTCTCCTTATACTCAGAAGGAGAGATCCAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTCTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTATATAAAAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGGTCCTTGAATGTATTCATCATTTCGTTGAGATTTTGGACCGTTACTTTGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATACTGGATGAGCTTCTAATAGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACAGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCGCAGGCCACCAAGTAGGAACACTTCAGTGTATGTTTCAGTTTTTTGGTGAATTGAGTTGTTCTGAAACATTGTAATTATATGTTATCTGGACTTGTATCATACAAGTGAATGCCTTGTTTTTGCTTATTTTCATTTGTAGAATTACACAAATTGTTGGTGTTCTAGTGATTTCACCTGCCTGGTTAAATGTCTGCTGGATTGTTCTATTGTTGATCACAAATACAAACGTTATTGCTTGCTATGCTAGAAGTGTTCGTTCTCTGTTTCTTA

Coding sequence (CDS)

ATGAATTCTGAACAAAATATATTTACAGCAGAACGACGGAGGAGAAACTGTACTCTGATCGGAGAGATCGAATTTTGGAATCGAGATCTTTGGTTCCTGAAAGTTCAGAGCAAAATGATTCACTTTGTGCTTCTTATAAGCAGACAAGGAAAAGTGAGGTTGACGAAATGGTATTCTCCTTATACTCAGAAGGAGAGATCCAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTCTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTATATAAAAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGGTCCTTGAATGTATTCATCATTTCGTTGAGATTTTGGACCGTTACTTTGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATACTGGATGAGCTTCTAATAGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACAGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCGCAGGCCACCAAGTAG

Protein sequence

MNSEQNIFTAERRRRNCTLIGEIEFWNRDLWFLKVQSKMIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Homology

[Close]

BLAST of CmaCh19G008280 vs. ExPASy Swiss-Prot
Match: Q8LEZ8 (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 9.5e-80
Identity = 147/161 (91.30%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLL+SRQGKVRLTKWYSPYTQKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCID+ DNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of CmaCh19G008280 vs. ExPASy Swiss-Prot
Match: O23685 (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.6e-79
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLL+SRQGKVRLTKWYSPY QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQ+DNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 199
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of CmaCh19G008280 vs. ExPASy Swiss-Prot
Match: B0G185 (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.5e-58
Identity = 104/141 (73.76%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 41  HFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRY 100
           HF+LL+SRQGK RLTKWYSP+T KE+S+  RE+  M+LNR PKLCNF+EW+  K ++KRY
Sbjct: 4   HFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRY 63

Query: 101 ASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 160
           ASLYF +C D++DNEL VLE IHHFVEILDRYFG+VCELDLIFNFHKAYYILDEL++AGE
Sbjct: 64  ASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGE 123

Query: 161 LQESSKKTVARLIAAQDSLVE 182
           LQE+SKKTV RLI+ QD+L+E
Sbjct: 124 LQETSKKTVLRLISQQDTLLE 144

[Close]

BLAST of CmaCh19G008280 vs. ExPASy Swiss-Prot
Match: Q3ZBS3 (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.6e-47
Identity = 91/146 (62.33%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 40  IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 99
           + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 100 YASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 159
           YASLYFC  I+  DNEL  LE IH +VE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 160 ELQESSKKTVARLIAAQDSLVETAKE 186
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of CmaCh19G008280 vs. ExPASy Swiss-Prot
Match: Q9DB50 (AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.6e-47
Identity = 91/146 (62.33%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 40  IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 99
           + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 100 YASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 159
           YASLYFC  I+  DNEL  LE IH +VE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 160 ELQESSKKTVARLIAAQDSLVETAKE 186
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of CmaCh19G008280 vs. ExPASy TrEMBL
Match: A0A6J1I247 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111468332 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.1e-83
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of CmaCh19G008280 vs. ExPASy TrEMBL
Match: A0A6J1GMJ5 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111455328 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.1e-83
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of CmaCh19G008280 vs. ExPASy TrEMBL
Match: A0A0A0K1P7 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.1e-81
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQ+DNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of CmaCh19G008280 vs. ExPASy TrEMBL
Match: A0A1S3CGG1 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.1e-81
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQDDNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of CmaCh19G008280 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.3e-81
Identity = 157/161 (97.52%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           +IHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 78  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 137

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQDDNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 138 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 197

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 198 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of CmaCh19G008280 vs. NCBI nr
Match: KAG6572201.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 394.8 bits (1013), Expect = 4.4e-106
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 2   NSEQNIFTAERRRRNCTLIGEIEFWNRDLWFLKVQSKMIHFVLLISRQGKVRLTKWYSPY 61
           NSEQNIFTAERRRRNCTLIGEIEFWNRDLWFLKVQSKMIHFVLLISRQGKVRLTKWYSPY
Sbjct: 19  NSEQNIFTAERRRRNCTLIGEIEFWNRDLWFLKVQSKMIHFVLLISRQGKVRLTKWYSPY 78

Query: 62  TQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEC 121
           TQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEC
Sbjct: 79  TQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEC 138

Query: 122 IHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVE 181
           IHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVE
Sbjct: 139 IHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVE 198

Query: 182 TAKEQASSISNIIAQAT 199
           TAKEQASSISNIIAQAT
Sbjct: 199 TAKEQASSISNIIAQAT 215

[Close]

BLAST of CmaCh19G008280 vs. NCBI nr
Match: XP_022952715.1 (AP-1 complex subunit sigma-1 [Cucurbita moschata] >XP_022969279.1 AP-1 complex subunit sigma-1-like [Cucurbita maxima] >XP_023554628.1 AP-1 complex subunit sigma-1-like [Cucurbita pepo subsp. pepo] >KAG7011840.1 AP-1 complex subunit sigma-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 319.3 bits (817), Expect = 2.3e-83
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of CmaCh19G008280 vs. NCBI nr
Match: XP_008462009.1 (PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo])

HSP 1 Score: 312.8 bits (800), Expect = 2.2e-81
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQDDNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of CmaCh19G008280 vs. NCBI nr
Match: XP_004144562.1 (AP-1 complex subunit sigma-1 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 2.2e-81
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQ+DNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of CmaCh19G008280 vs. NCBI nr
Match: XP_038888262.1 (AP-1 complex subunit sigma-2 [Benincasa hispida])

HSP 1 Score: 312.4 bits (799), Expect = 2.8e-81
Identity = 157/161 (97.52%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQDDNELE+LE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of CmaCh19G008280 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 297.7 bits (761), Expect = 6.8e-81
Identity = 147/161 (91.30%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLL+SRQGKVRLTKWYSPYTQKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCID+ DNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 200
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of CmaCh19G008280 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-80
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLL+SRQGKVRLTKWYSPY QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYASLYFCMCIDQ+DNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 159 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 199
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of CmaCh19G008280 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 217.6 bits (553), Expect = 8.9e-57
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MIHFVLL+SRQGKVRLTKWYSPY QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHK 148
           RYASLYFCMCIDQ+DNELEVLE IHH+VEILDRYFGSVCELDLIFNFHK
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

[Close]

BLAST of CmaCh19G008280 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 158.3 bits (399), Expect = 6.4e-39
Identity = 75/141 (53.19%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 39  MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 98
           MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR  K  NFVE+R  K +Y+
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 99  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 158
           RYA L+F +C+D  DNEL  LE IH FVEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 159 GELQESSKKTVARLIAAQDSL 180
           GELQE+SK+ +   ++  + L
Sbjct: 121 GELQETSKRAIIERMSELEKL 141

[Close]

BLAST of CmaCh19G008280 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-28
Identity = 58/138 (42.03%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 40  IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 99
           I F+L++++QG+ RL ++Y   T +ER  +  E+    L R  + C+FVE R  K VY+R
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 100 YASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 159
           YASL+F + +D D+NEL +LE IH  VE +D++FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 160 ELQESSKKTVARLIAAQD 178
            + E+SK  +   I   D
Sbjct: 123 CIVETSKANILSPIQLMD 140

The following BLAST results are available for this feature:

BLAST of CmaCh19G008280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LEZ8	9.5e-80	91.30	AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=...	[more]
O23685	1.6e-79	91.88	AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=...	[more]
B0G185	3.5e-58	73.76	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ...	[more]
Q3ZBS3	1.6e-47	62.33	AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1	[more]
Q9DB50	1.6e-47	62.33	AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1	[more]

BLAST of CmaCh19G008280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I247	1.1e-83	100.00	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111468332 PE=3 SV=1	[more]
A0A6J1GMJ5	1.1e-83	100.00	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111455328 PE=3 SV=1	[more]
A0A0A0K1P7	1.1e-81	98.14	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1	[more]
A0A1S3CGG1	1.1e-81	98.14	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1	[more]
A0A5D3D5G1	2.3e-81	97.52	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of CmaCh19G008280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572201.1	4.4e-106	100.00	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022952715.1	2.3e-83	100.00	AP-1 complex subunit sigma-1 [Cucurbita moschata] >XP_022969279.1 AP-1 complex s...	[more]
XP_008462009.1	2.2e-81	98.14	PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo]	[more]
XP_004144562.1	2.2e-81	98.14	AP-1 complex subunit sigma-1 [Cucumis sativus]	[more]
XP_038888262.1	2.8e-81	97.52	AP-1 complex subunit sigma-2 [Benincasa hispida]	[more]

BLAST of CmaCh19G008280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17380.1	6.8e-81	91.30	associated protein 19	[more]
AT4G35410.2	1.2e-80	91.88	Clathrin adaptor complex small chain family protein	[more]
AT4G35410.1	8.9e-57	92.66	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	6.4e-39	53.19	SNARE-like superfamily protein	[more]
AT2G19790.1	3.0e-28	42.03	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 39..195 e-value: 1.3E-65 score: 222.1
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 39..189
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 39..178 e-value: 1.5E-53 score: 180.5
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 39..189
IPR044733	AP-1 complex subunit sigma	CDD	cd14831	AP1_sigma	coord: 41..181 e-value: 5.68934E-101 score: 285.991
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 39..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G008280.1	CmaCh19G008280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030121	AP-1 adaptor complex
molecular_function	GO:0035615	clathrin adaptor activity