CmaCh19G008020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G008020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	40S ribosomal protein S11
Location	Cma_Chr19: 7760817 .. 7765505 (+)
RNA-Seq Expression	CmaCh19G008020
Synteny	CmaCh19G008020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTAAGAGTCGAGATACATCTTTTTTTTTTTTTTTTTCATTTATTGAAATAAGCAAATTTTATGCATGAATAATGCTATTTTATATTAATGATCAAATCGTGCCTGCATTGATTAAATTCACCATCGAAAGAAATTTCTACACTGATCGCTCGTTCTTATTTTCGTATGCATTTTCTTGTTAGTAGATCTGTTCGTTCTTATTTTCGTATGCATTTTCTCGTTAGTATATCTATGAATTGTATGCAATTTCTGGTCTTATAATCTATATCCGCTTGCTAAAGGGAAGAACTAGAGCCCGAAGTGGTTGAATTGGCGAGGAGATTCCTCCAAAATCATGCTAAGAACGGCTACGATTTTCTCAATCTTGAAGATTTTCTTGAAAATCGCACTTAATTTTGATGCAGTTTATCACGCTAGGTAGGAATGTTCATGAACAAAACAAACTTTTTATACCAAATTTAAAAATAAATTATTTTAAAAGACTAAATTTAAGATTTATGGAGTGCATATGTTTATTAAAACTTCAAAAGAAAATTTTGGCCCATTTTCATATGGTAAGCCCAATTCTCCTGTAAAGCCCATCTATTGTCGTCTGCTCTATAACTCTCTGAAGCAGGTTTAGGGTTTCTGTAATCGAACTCTGCTCCTTCGGCCGCTCGAGCGAACCAGAACGCTTGCTCTCTTCGGAAGCCCTAATCATGGCGGAGCAGGTTTCTATTGAATTGGCGACATTCATTTCCTTTTTCTTTTGAGTGACTTTAACATCTCTGTACTCTTCATCTTTTTTCCGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAGGTTTTTCTCTGGTAAACGAATTGAATTTTTTGTTTTTTGTTCAGTTTTTGAATGCGTGCTCTGGTGTTCTTTTTTTGAATTTTTGTTCTGTTTTGCTTTTTATATCTTGATTTGATTTTGTTTTTATGATTTTGTGTTGTTCTAATTATTAATCTATTTCGTTTTCAAAATAGCTCTAAAAAGAGTGGGAAGGGAAAGAGACCTGGGAAGGGCGGGAACCGTTTTTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGGGAAGCCGTTGAAGGTTCTGTTTTTCATAACTCTGTTCACCTTATGTTTGTTGGCTTGCTAATATGAATGTTTTTGGTCTTTTTGTCTTTCGACTTTGCTCGAGTATCATACACTGGAAGCCAGAGTCATTGTTTGCTCTGAACCTTCCCGTTGCACTCTTATCTCCAATAAAAAAAACCATGTAATTTGATTATTTTTAACCTGCTATAGAGCTTCATTGATTGTATTCTCTATTGGAAGTTAGTTATTAACTGTTTCCTATGTATATGATGAGATGGAGCTGCATCCTCATTGTCATGAAATTAGCTGTCTTGTAGGAATTCTTATTGAATTGCTATTTGTTCGAATGCTGAGAGGATACAACTTATTGAAAAAACATAATGAGCTGAAGAGATAGTTGTGTCGAGGATTTATCATCTTTTGTTTAGAATAGGTGTATGTTTCTGCATTGATACAACAGTATCTACTAGATGGATCGTTGAGGGAGTACAAAATATCAAGGAATTTTGTTGATGGAATGATGCCAAACATAGTACTCTCCAATCAATTATGTATTATTAAGAAAAATTGCCACAGCATTGTGTTTATCGAGAAATTCAAGATTGAATATTCGAATTCTAATGGCGTATCCCCATTCTAGGCTTGGCATCCTCACTTACCTTATGTACTGTATTCATTCTTATTAAGGCCCAATATTTAGGCGTATGTTGCTCTCATGTTCTGTGAATTGTTGCTGCAAATAAGAATTCTTCCAGTGAAGGGGAATTTCTTTGCAATATTGCATCCTCATTTACCTATGTATTGCATGCATCCTTATCTCTAAGTTTTTAAGACCCTATTTAGGCATATCTTGCTATTATGTTCTTTAGAATTGTTGCTATTTACTTACTGATTATTCCAGTTCTGTTGCATTCATGCAGGAACATATATTGATAAGAAATGCCCCTTTACCGGAACTGTCTCTATCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAAATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTGCTTTACTGAACTCCACCCTACGCACACACAGTTGGCACCACTGCCACTGCCATCTGATTTTTCTTTTCGTGGTTTTGACATATTGTGTTTCTTCTTTTTCCTTCAGGTATGAGAAAAGGCACTCCAACATTCCAGCCCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCACGTTATTATTGGCCAATGCAGGTACATTAAGATATGAAGAATTCTTTCCATTGATTGCTGTTATTATATCTTTTATTTTGTGCCTTTTTCCAAGACTTGTTTCACATTTACCGTGTTTTAATGAATTTCAGGCCATTGTCCAAGACAGTAAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGGTCCTCAAGTAGTGGGAAGAAGGCTTTTGCGGGGATATAAATTCTGTAGGCTTCCTCTTTTGATACAAAAACAGCAACTGTTTAGAGTTGTAAGCCATATTTAATTCAACAGAGTTTTGAAGACTTATATAGTCTGAATTTTGATTTGAGTATGGATTCTTTTATTGTGTTCTATTTGTTTCGATTTCTGGCAAATTTAGGGGGGGTAATCTCAAGGATTAATGTTTGATAGTTTATGTTTCAATTGAAAACGCCCCTTGATTGATGAATTATTATTTGATTAAAAGAGTTAAGCGGCTTCTTAGTTCATTGAAAAGGCCCTGTGAGGGCCTGTCTTGATTTGGATAATGGATCTAGCTTTTTGTACATTAACTTATCCCCTTTAGCTTCCATTAGAAACCATTATGCAATGTCAGGGCCCCCACCACTCTGTAGGCATTACCCCATTAAATGAGGCCTCTTTTTGGCATCTTTCTGAGGTTGGCTTGTCTCTAGCAAACAAGGCAAGGAGGAATCCTTGCAGTCACTTTAAGCTTATTGCATGTCATGTGTGGCTCATATGTGTTGCATGTGGCGCTGCGAACCCTTAAATCTTAGGGACTAATTTGAAATTAAGTTAGAAATCCTAGATACTAATTTGAACTTTAATCTTTTGTTTTAAGAATCTTTTGATTCTTTCAAAGTTCGTAATATTGTTTCGAATCTTTCTATGTTTCAAAACATACCATGGATGCAAGGTTGTTTAGCATTTTGTAAGAACATGACTTGGATTCCTAGAAGAACATGAGAATAATAGGGAAAAGGGGGAAAAGTCTCAAATCTTTTATTCCAAGAATAACTTGACAACTCTTTATTTTGCTTTACTGTAAAACATAAAATTAGGTCCCCCAAATCCAATACCCAAATAATTTCTCAAGTGTTTGAATATTCTCTGAGTTTTTATGAGCTTGACAAGAATTTAAACCTCGGGTTAGAACACTCACTCGTGCTTTTTCTTCGTCTTCTGCCTCGTAGGTCGATTTGTTCGTTTGCTTCACAGTTTACTCAACTTTATATGACTTGCACCAAGTGTGTTGACACAACTCATTTATGGAAATCTAACCTTCCTGAAGCTGTGGTATTGTGTGTCAGCATTGCACTTTAGATCCTTGCTTCCAATTAGTGAGCCAGATTGACCAATCCAAACCTCTTATTTCTGAACCATTTTTCGGGTTATGCTCTTCATTTACTTACTGCTATAGATACTAAGCCATACTTTTGATGTCCCATGCTCACTTCTTCTTCTCTAAGGTAGGGGCATGTTTGAGGCATGCGTTGATGGTATTCGAGTCATCTTGGTCTTCGTCATTTTGGCCTAGATTTAGGCGTATAGTTGACCCATGAATCTTCTTCAACCTTCTTGAAGGTTTGGGTGTTTATCGACCCCTAAGGCTTAATCTAACTCTTGTTTTGATCTTATAAAAAAACATTTTTACTTTATTGTATTGACTCAATCTTCTTTTTGACCTCTACCTATTGGATAGGTGAAAAAACATATAAGACGTAATGGTGAATTCTTTTAATTAGGTAATTATTGAAAGATGTAACTCGTAAAAAAAAAACTAATCTAGTTTTAAGATGTAAGATTTTAAAGAATTAGAGTTAGACGACTTGTGTTATGATTGTGTACATATACTAGTGATAACTTAGGTTGATTTTTCATTTTTTTTTATTCTTTTAAAACACTTCTACTTGGGAAGATTCCATATCCTTATAAAAAATGTTTTGTTTCCTTCTACAATTGATGTGAGACCTCACAATCGAGCCCCAAGGGCTCAGCATTCTCACTGATACACTGACTAGTGTTTGACTTGATTCCATTAGGCAAGCTTTGGATTAAATTATACAAAATTTAAATTATTGTTTTAATTTTTTAAAGAGTATATACAATTTAGGTGAATTGTGTGCATCGCATTGTGGAAACGAAATGACCAAATTGCCCCCATCATTGCAACACCTCTCTCAATATCTCTCTTCGAGAAAACTTACAAGTGAAAGGACTAAATTACCCAGAATTTCAACGCCTTTCTCAACTTCTCTCTTCGAGAAAACTGCCTCAAATGGTCATTTGGTTACCCCTATATAAGGATTCAGGTCCTCCACCTTCGTTTCATCTCTGAAGTTCTCTCTCTTCCGTGA

mRNA sequence

ATGTTTAGGGTTTCTGTAATCGAACTCTGCTCCTTCGGCCGCTCGAGCGAACCAGAACGCTTGCTCTCTTCGGAAGCCCTAATCATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAGAGTGGGAAGGGAAAGAGACCTGGGAAGGGCGGGAACCGTTTTTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGGGAAGCCGTTGAAGGAACATATATTGATAAGAAATGCCCCTTTACCGGAACTGTCTCTATCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAAATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCAGCCCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCACGTTATTATTGGCCAATGCAGGCCATTGTCCAAGACAGTAAGGTTCAATGTGTTGAAGAGTTTTGAAGACTTATATAGTCTGAATTTTGATTTGAGTATGGATTCTTTTATTGTGTTCTATTTGTTTCGATTTCTGGCAAATTTAGGGGGGGTCGATTTGTTCGTTTGCTTCACAGTTTACTCAACTTTATATGACTTGCACCAAAATTTCAACGCCTTTCTCAACTTCTCTCTTCGAGAAAACTGCCTCAAATGGTCATTTGGTTACCCCTATATAAGGATTCAGGTCCTCCACCTTCGTTTCATCTCTGAAGTTCTCTCTCTTCCGTGA

Coding sequence (CDS)

ATGTTTAGGGTTTCTGTAATCGAACTCTGCTCCTTCGGCCGCTCGAGCGAACCAGAACGCTTGCTCTCTTCGGAAGCCCTAATCATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAGAGTGGGAAGGGAAAGAGACCTGGGAAGGGCGGGAACCGTTTTTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGGGAAGCCGTTGAAGGAACATATATTGATAAGAAATGCCCCTTTACCGGAACTGTCTCTATCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAAATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCAGCCCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCACGTTATTATTGGCCAATGCAGGCCATTGTCCAAGACAGTAAGGTTCAATGTGTTGAAGAGTTTTGAAGACTTATATAGTCTGAATTTTGATTTGAGTATGGATTCTTTTATTGTGTTCTATTTGTTTCGATTTCTGGCAAATTTAGGGGGGGTCGATTTGTTCGTTTGCTTCACAGTTTACTCAACTTTATATGACTTGCACCAAAATTTCAACGCCTTTCTCAACTTCTCTCTTCGAGAAAACTGCCTCAAATGGTCATTTGGTTACCCCTATATAAGGATTCAGGTCCTCCACCTTCGTTTCATCTCTGAAGTTCTCTCTCTTCCGTGA

Protein sequence

MFRVSVIELCSFGRSSEPERLLSSEALIMAEQTEKAFLKQPKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKSFEDLYSLNFDLSMDSFIVFYLFRFLANLGGVDLFVCFTVYSTLYDLHQNFNAFLNFSLRENCLKWSFGYPYIRIQVLHLRFISEVLSLP

Homology

[Close]

BLAST of CmaCh19G008020 vs. ExPASy Swiss-Prot
Match: Q9M5M1 (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.3e-70
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       K+GKGKRPGKGGNRFWKSIGLGFKTPREA++GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. ExPASy Swiss-Prot
Match: P25460 (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.3e-70
Identity = 129/142 (90.85%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       KSGKGK+PGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNV+K
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVK 142

[Close]

BLAST of CmaCh19G008020 vs. ExPASy Swiss-Prot
Match: P42733 (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 263.8 bits (673), Expect = 1.9e-69
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 29  MAEQTEKAFLKQPK-------SGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQPK       SGKGKRPGKGGNRFWK+IGLGFKTPREA++G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. ExPASy Swiss-Prot
Match: P16181 (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.3e-69
Identity = 125/142 (88.03%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       KSGKGKRPGKGGNRFWK+IGLGFKTPREA++G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDH+IIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. ExPASy Swiss-Prot
Match: P17093 (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 263.1 bits (671), Expect = 3.3e-69
Identity = 128/142 (90.14%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       K+GKGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHISP FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. ExPASy TrEMBL
Match: A0A6J1K5C0 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111491814 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 4.8e-71
Identity = 135/146 (92.47%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 25  EALIMAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYID 84
           E LIMAEQTEKAFLKQP       KSGKGKRPGKGGNRFWKS+GLGFKTPREA+EGTYID
Sbjct: 22  ETLIMAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSVGLGFKTPREAIEGTYID 81

Query: 85  KKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCF 144
           KKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHI+PCF
Sbjct: 82  KKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCF 141

Query: 145 RVKEGDHVIIGQCRPLSKTVRFNVLK 164
           RVKEGDHVIIGQCRPLSKTVRFNVLK
Sbjct: 142 RVKEGDHVIIGQCRPLSKTVRFNVLK 167

[Close]

BLAST of CmaCh19G008020 vs. ExPASy TrEMBL
Match: A0A6J1HZI1 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.0e-70
Identity = 135/142 (95.07%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. ExPASy TrEMBL
Match: A0A6J1GJT3 (40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.0e-70
Identity = 135/142 (95.07%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. ExPASy TrEMBL
Match: A0A6J1HEQ3 (40S ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=LOC111462372 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.2e-69
Identity = 133/142 (93.66%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       KSGKGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. ExPASy TrEMBL
Match: A0A6J1KTV2 (40S ribosomal protein S11 OS=Cucurbita maxima OX=3661 GN=LOC111496347 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.2e-69
Identity = 133/142 (93.66%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       KSGKGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. NCBI nr
Match: KAG6572178.1 (Glutamate receptor 3.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325.9 bits (834), Expect = 3.2e-85
Identity = 163/170 (95.88%), Postives = 163/170 (95.88%), Query Frame = 0


Query: 1    MFRVSVIELCSFGRSSEPERLLSSEALIMAEQTEKAFLKQP-------KSGKGKRPGKGG 60
            MFRVSVIELCSFGRSSEPERLLSSEALIMAEQTEKAFLKQP       KSGKGKRPGKGG
Sbjct: 1494 MFRVSVIELCSFGRSSEPERLLSSEALIMAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGG 1553

Query: 61   NRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYL 120
            NRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYL
Sbjct: 1554 NRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYL 1613

Query: 121  HYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 164
            HYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK
Sbjct: 1614 HYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 1663

[Close]

BLAST of CmaCh19G008020 vs. NCBI nr
Match: KAG6586349.1 (40S ribosomal protein S11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.5 bits (724), Expect = 1.8e-72
Identity = 142/165 (86.06%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 6   VIELCSFGRSSEPERLLSSEALIMAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWK 65
           VIE+ SFGR S+ + +LSSE LIMAEQTEKAFLKQP       K GKGKRPGKGGNRF+K
Sbjct: 30  VIEVSSFGRLSKQQLVLSSEVLIMAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYK 89

Query: 66  SIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKK 125
           SIGLGFKTPREA+EGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKK
Sbjct: 90  SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKK 149

Query: 126 YQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 164
           YQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVR  +L+
Sbjct: 150 YQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRRRLLE 194

[Close]

BLAST of CmaCh19G008020 vs. NCBI nr
Match: XP_022996631.1 (40S ribosomal protein S11-like [Cucurbita maxima])

HSP 1 Score: 277.7 bits (709), Expect = 9.9e-71
Identity = 135/146 (92.47%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 25  EALIMAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYID 84
           E LIMAEQTEKAFLKQP       KSGKGKRPGKGGNRFWKS+GLGFKTPREA+EGTYID
Sbjct: 22  ETLIMAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSVGLGFKTPREAIEGTYID 81

Query: 85  KKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCF 144
           KKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHI+PCF
Sbjct: 82  KKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCF 141

Query: 145 RVKEGDHVIIGQCRPLSKTVRFNVLK 164
           RVKEGDHVIIGQCRPLSKTVRFNVLK
Sbjct: 142 RVKEGDHVIIGQCRPLSKTVRFNVLK 167

[Close]

BLAST of CmaCh19G008020 vs. NCBI nr
Match: XP_022952178.1 (40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosomal protein S11-like [Cucurbita maxima] >KAG7011817.1 40S ribosomal protein S11-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.6 bits (701), Expect = 8.4e-70
Identity = 135/142 (95.07%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. NCBI nr
Match: KAG6585484.1 (40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.1 bits (697), Expect = 2.4e-69
Identity = 133/142 (93.66%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       KSGKGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. TAIR 10
Match: AT5G23740.1 (ribosomal protein S11-beta )

HSP 1 Score: 263.8 bits (673), Expect = 1.4e-70
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 29  MAEQTEKAFLKQPK-------SGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQPK       SGKGKRPGKGGNRFWK+IGLGFKTPREA++G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDHVIIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. TAIR 10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 263.1 bits (671), Expect = 2.3e-70
Identity = 125/142 (88.03%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       KSGKGKRPGKGGNRFWK+IGLGFKTPREA++G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GDH+IIGQCRPLSKTVRFNVLK
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLK 142

[Close]

BLAST of CmaCh19G008020 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 257.7 bits (657), Expect = 9.8e-69
Identity = 124/142 (87.32%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 29  MAEQTEKAFLKQP-------KSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 88
           MAEQTEKAFLKQP       KSGKGKRPGKGGNRFWK+IGLGFKTPREA+EGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 89  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 148
           FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 149 GDHVIIGQCRPLSKTVRFNVLK 164
           GD V IGQCRPLSKTVRFNVLK
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLK 142

The following BLAST results are available for this feature:

BLAST of CmaCh19G008020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5M1	2.3e-70	90.14	40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1	[more]
P25460	2.3e-70	90.85	40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1	[more]
P42733	1.9e-69	89.44	40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2	[more]
P16181	3.3e-69	88.03	40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1	[more]
P17093	3.3e-69	90.14	40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2	[more]

BLAST of CmaCh19G008020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K5C0	4.8e-71	92.47	40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111491814 PE=3 ...	[more]
A0A6J1HZI1	4.0e-70	95.07	40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 ...	[more]
A0A6J1GJT3	4.0e-70	95.07	40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=...	[more]
A0A6J1HEQ3	1.2e-69	93.66	40S ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=LOC111462372 PE=3 SV=...	[more]
A0A6J1KTV2	1.2e-69	93.66	40S ribosomal protein S11 OS=Cucurbita maxima OX=3661 GN=LOC111496347 PE=3 SV=1	[more]

BLAST of CmaCh19G008020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572178.1	3.2e-85	95.88	Glutamate receptor 3.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6586349.1	1.8e-72	86.06	40S ribosomal protein S11, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022996631.1	9.9e-71	92.47	40S ribosomal protein S11-like [Cucurbita maxima]	[more]
XP_022952178.1	8.4e-70	95.07	40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosoma...	[more]
KAG6585484.1	2.4e-69	93.66	40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh19G008020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23740.1	1.4e-70	89.44	ribosomal protein S11-beta	[more]
AT3G48930.1	2.3e-70	88.03	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G30800.1	9.8e-69	87.32	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 142..152 score: 60.91 coord: 109..132 score: 37.33 coord: 152..159 score: 73.25
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 95..163 e-value: 1.9E-25 score: 88.8
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 42..163
None	No IPR available	GENE3D	2.40.50.1000		coord: 16..170 e-value: 1.7E-75 score: 254.3
None	No IPR available	PANTHER	PTHR10744:SF37	BNAA06G38660D PROTEIN	coord: 42..163
IPR028333	Ribosomal protein S17, archaeal/eukaryotic	TIGRFAM	TIGR03630	TIGR03630	coord: 75..163 e-value: 2.6E-33 score: 112.0
IPR032440	40S ribosomal protein S11, N-terminal	PFAM	PF16205	Ribosomal_S17_N	coord: 32..93 e-value: 1.0E-25 score: 89.9
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 142..154
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 89..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G008020.1	CmaCh19G008020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome