CmaCh19G007060 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G007060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionATP synthase subunit e, mitochondrial
LocationCma_Chr19: 7217023 .. 7219800 (+)
RNA-Seq ExpressionCmaCh19G007060
SyntenyCmaCh19G007060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTTCCTCCAGGGCCCTATTCTGGAACCAGCACCCTCGCTTTGGTGAGTTTTTGTTGTTTTCCGTGACAAATTTGTACCGGAGATTAGGAAGAATATCATATGTTGAGAATGCTGTATCCGATTCTGATTTTAGATTCAATAATGGAAATAATTACTCATATTCAATGTTCTTGAGTCTTGGCAGGTTGCTCGTGCTTCGGCGTTTTCTGTTGGACTTGTCTACGGAAGCCTCAAGCTCAAGTACCTTCAGGTTTGTTGCTTCCATTTCCTTCTTTTCGTACTTTCTAGTTTTCCGCTGCAAAATTTTGGTTCGTTGATTTGGAATTGTGTTTCTGGCTTGAATGGTAGTATCTCTAAATTTTCATTTCCGATTGCTCATTTCTGCAAAGAGCATCATAGTGCCACCTGCTATGTATTCATCGGATTCTAGATGTAGAATGTTTTTTTAGTGCTATGTTTGTTGGATGAATGCCCCACCTTGGCTAATTTAGGGAATGATTATGGGTTTATAATCAAGGAATACTATCTCCATTGGTATGCGGCTTTTTTGGGAAACCCAAAGCAAAGCCATGAGAGCTTATACTCAAAGTGGACAATATCATATCAGTGTGGAGAGTCGTGCTCATCTAACAATCTAACAATCTACTTTGTTATCCATCAAATTCATGTTCATTCTTTTTCTTATCGGAATGCTTTTTCAAGGCTTTGTTATTTAAAATGCCCCTGAGCTTTAAGATTAGTTTCAAAGAAAAAGTTTCACTTTTACCCTTGACCTTTAAGTTTATTCAAATATGCCTTGAGGAATTTTATCTTTACAACGAGTTATGGAATTGTATATGGCTGCTTAGTTGTAAAATAAACGGCAAAGATGACCAGGACCGATAACCACTATGGAATTGTACATAGCTTCTTAGAAAAGGTCCCAAAACTCAAACTTAATGCCATCAACCATCTCTGGTAGATTTGATAAGTTCTCTTCTACAATTCGCTGAATTCTTTCACCTTCCATCAAGATGACCCGACCTGAAGCAGCTCTTACTTTTGTTTATGAAACCCATACCTTGAATACAGAAGTTACTCAAATTAGAAATACAAGTGCGTGGTGGTAAAAGGAGATCTAAAGTCACGATCTCTTTTTAATGAAGAAGGCTCTAAGAAGGGGATAAAGAGGATTTCGGATCTTTTTTTTTTTTGGTTCTTTCTTGCATTTTGTTCCAAGTATGTGCCCTACTATGGAAGAAGAGTCCTAAAGATAGAAAAAGGCATCTAATAATCTCATGGATCCTCCAATTCCATTTCAAGTGCCTGATAAATACAGATAGTCATTTAAAAATATTGTCTTCACTATTCTTGAAATTTTGTTTAAAAAAAAAAAAAACCACTGATCTATAATATCGATTCCTTAGAATTAGGATTTTCTTTGTGATAACTATTATGTATGATGCAATTGATGCGTTTTCTGATTGCAATTTGTTTCATTGTTTATTTTGATTATTTCATCACAGATTATCATTAATTTATCATTTTGAAATTTAAATTTTAAACATTTTTCTTGGAGCAACTATTTATGCTTTACAACATTGTTGATAAGTATATTAAAGGCTAAAAAATCACTATTGGTCCTTGAATTTTCGTAAAAGTAACAATTTGGGCCTTGAACTTTCATAGTAACGATTATATCTCTATATTTTGAAAATTGTAACCATTTAGTCCTTTCGTTAAAATTTCTACCATTCTCCAACACTTTCGTTAACTTTCTCTTCCATTCCCATCATTTGCTTCCCTTCTTCTTTCAAATTTCTTCAATTATTTGGTGGGTTTGATTTCAAGGGTGGGTATTGTGAGACGAAAGGATGAGGTGGTGGTGCATGCAGCAGACTTTTGTGGGCTGTATGTTTGATTTCTTCAATTGGACTACCCTACATTGGTGCTTCGTCTTTTTGGGTGAATGCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAACCTTGCAAAACAATTACCTTGGAAGTGGAGAGCTATGATACAATTGATAATCTCTTCCTTGACACATGAACTTCGGGGATTCTAACCGCCTTTATAGTACAGTAGCTTCCCAGATCTTTCGATTCCCTTCACCCCAGTGTAAAAAGCTCAGAAAATCTCTGCAGGTTTTGGTATTGTCTGCAAATTCTTCAATGAAAGTTCACCTGCTTTCATCCTTCCCAATCAAAATGTCTTGAGGAAATCTTTTGGTTTGGACATTGTTCTCTTCTAGTAACAAATACTGCTGCTCCCAAACTTCAAATGGGAGAAATTAAACTCACTGTAGAATTGAAGAATTCAAAAGAAGAGTGGAAGCAAATGTGAACTGCCGGAGGAATATGAAATTTTTAACCGAGGGAATTGTTACAATTTTTAAAGTACATCGGTCCAAATGTCTAATGCCATGAAAGGATTAATTGTTTTAAATGGTTATCAAATGTGTGTTAATTTCCATTAATATCAATGACGACTAAATGATTTATTCACACATTTCTAGTGACATTCCTGTTCAATTTCAGTTTAACTTATAATCATTATGATCTACAAATCTCATGTTATTTATCGCTATCTCTTGGGGCCATTCTAAATGCACCTGTCTGATTTTAGAATTATGCTTCAATTCCTATTTTATCACCACAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAGGCTCATCACTGAGGTATGGCTGATGATTCTTATCAGCAGCAAAATTGAGGCACCG

mRNA sequence

ATGGCGCTTCCTCCAGGGCCCTATTCTGGAACCAGCACCCTCGCTTTGGTTGCTCGTGCTTCGGCGTTTTCTGTTGGACTTGTCTACGGAAGCCTCAAGCTCAAGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAGGCTCATCACTGAGGTATGGCTGATGATTCTTATCAGCAGCAAAATTGAGGCACCG

Coding sequence (CDS)

ATGGCGCTTCCTCCAGGGCCCTATTCTGGAACCAGCACCCTCGCTTTGGTTGCTCGTGCTTCGGCGTTTTCTGTTGGACTTGTCTACGGAAGCCTCAAGCTCAAGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAGGCTCATCACTGAGGTATGGCTGATGATTCTTATCAGCAGCAAAATTGAGGCACCG

Protein sequence

MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKRRQNLTRKLKQRLITEVWLMILISSKIEAP
Homology
[Close]
BLAST of CmaCh19G007060 vs. ExPASy TrEMBL
Match: A0A0B0PCA2 (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_09277 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-09
Identity = 45/78 (57.69%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLK-------------------RRQNLT 60
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLK                    RQ L 
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKGMGLILEIQNVLHEWRPRQGLK 60

[Close]
BLAST of CmaCh19G007060 vs. ExPASy TrEMBL
Match: A0A0A0K2E7 (ATP synthase subunit e, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G007920 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKRRQNLTRKLKQ 47
          MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLK  Q   +  K+
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKK 46

[Close]
BLAST of CmaCh19G007060 vs. ExPASy TrEMBL
Match: A0A6J1GMM8 (ATP synthase subunit e, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455357 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-08
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKRRQNLTRKLKQ 47
          M LPPGPYSGTSTLALVARASAFSVGLVYGSLKLK  Q   +  K+
Sbjct: 1  MTLPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKK 46

[Close]
BLAST of CmaCh19G007060 vs. ExPASy TrEMBL
Match: A0A7J6FXI7 (ATP synthase subunit e, mitochondrial OS=Cannabis sativa OX=3483 GN=F8388_024057 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKRRQNLTRKLKQ 47
          MA PPGPYSGTSTLALVARASAFS+GLVYGSLKLK  Q   +  K+
Sbjct: 42 MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLKYLQAKAKSHKK 87

[Close]
BLAST of CmaCh19G007060 vs. ExPASy TrEMBL
Match: A0A2P5AKB4 (ATP synthase subunit e, mitochondrial OS=Parasponia andersonii OX=3476 GN=PanWU01x14_324020 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLK 36
          MA PPGPYSGTSTLALVARASAFS+GLVYGSLKLK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLK 35

[Close]
BLAST of CmaCh19G007060 vs. NCBI nr
Match: XP_040963834.1 (uncharacterized protein LOC121224489 [Gossypium hirsutum] >KAG4114197.1 hypothetical protein ERO13_D12G031701v2 [Gossypium hirsutum])

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLK---LKRRQNLTRKLKQRLITE 52
          MALPPGPY+GTSTL+LVARASAFS GLVYGS+K   LK +    RKLKQRL  E
Sbjct: 1  MALPPGPYAGTSTLSLVARASAFSFGLVYGSIKLKYLKAKAKSQRKLKQRLTAE 54

[Close]
BLAST of CmaCh19G007060 vs. NCBI nr
Match: KHG22467.1 (hypothetical protein F383_09277 [Gossypium arboreum])

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08
Identity = 45/78 (57.69%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLK-------------------RRQNLT 60
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLK                    RQ L 
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKGMGLILEIQNVLHEWRPRQGLK 60

[Close]
BLAST of CmaCh19G007060 vs. NCBI nr
Match: XP_038887516.1 (uncharacterized protein LOC120077638 [Benincasa hispida] >KGN43194.1 hypothetical protein Csa_020535 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKRRQNLTRKLKQ 47
          MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLK  Q   +  K+
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKK 46

[Close]
BLAST of CmaCh19G007060 vs. NCBI nr
Match: KAG7022252.1 (hypothetical protein SDJN02_15983 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 8.9e-08
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKRRQNLTRKLKQ 47
          MALPPGPYSG+STLALVARASAFSVGLVYGSLKLK  Q   +  K+
Sbjct: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKK 46

[Close]
BLAST of CmaCh19G007060 vs. NCBI nr
Match: XP_022952755.1 (uncharacterized protein LOC111455357 [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 8.9e-08
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKRRQNLTRKLKQ 47
          M LPPGPYSGTSTLALVARASAFSVGLVYGSLKLK  Q   +  K+
Sbjct: 1  MTLPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKK 46

[Close]
BLAST of CmaCh19G007060 vs. TAIR 10
Match: AT5G15320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 6.6e-09
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKRRQNLTRKLK 46
          M LPPG YSGTS+LALVARASAF +GLVYG++KLK +    +K++
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKIKSMSQKKVE 45

[Close]
BLAST of CmaCh19G007060 vs. TAIR 10
Match: AT3G01130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-09
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLK 36
          MA PPG YSGTSTLALVARASAF +GL+YG++KLK
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLK 35

[Close]
BLAST of CmaCh19G007060 vs. TAIR 10
Match: AT3G01130.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-09
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLK 36
          MA PPG YSGTSTLALVARASAF +GL+YG++KLK
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLK 35

[Close]
BLAST of CmaCh19G007060 vs. TAIR 10
Match: AT5G15320.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-09
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLK 36
          M LPPG YSGTS+LALVARASAF +GLVYG++KLK
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLK 35

The following BLAST results are available for this feature:
BLAST of CmaCh19G007060 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G007060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0B0PCA28.7e-0957.69Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_09277 PE=4 SV=1[more]
A0A0A0K2E71.5e-0880.43ATP synthase subunit e, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G007920... [more]
A0A6J1GMM84.3e-0878.26ATP synthase subunit e, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455... [more]
A0A7J6FXI71.3e-0776.09ATP synthase subunit e, mitochondrial OS=Cannabis sativa OX=3483 GN=F8388_024057... [more]
A0A2P5AKB41.3e-0794.29ATP synthase subunit e, mitochondrial OS=Parasponia andersonii OX=3476 GN=PanWU0... [more]
BLAST of CmaCh19G007060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_040963834.11.0e-0872.22uncharacterized protein LOC121224489 [Gossypium hirsutum] >KAG4114197.1 hypothet... [more]
KHG22467.11.8e-0857.69hypothetical protein F383_09277 [Gossypium arboreum][more]
XP_038887516.13.1e-0880.43uncharacterized protein LOC120077638 [Benincasa hispida] >KGN43194.1 hypothetica... [more]
KAG7022252.18.9e-0878.26hypothetical protein SDJN02_15983 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022952755.18.9e-0878.26uncharacterized protein LOC111455357 [Cucurbita moschata][more]
BLAST of CmaCh19G007060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G15320.26.6e-0964.44unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G01130.18.6e-0980.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G01130.28.6e-0980.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G15320.18.6e-0980.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36028OSJNBB0050O03.8 PROTEINcoord: 1..38
NoneNo IPR availablePANTHERPTHR36028:SF6ATP SYNTHASE E CHAINcoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G007060.1CmaCh19G007060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function GO:0015078 proton transmembrane transporter activity