CmaCh19G004260 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G004260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPhotosystem II CP47 reaction center protein
LocationCma_Chr19: 5207684 .. 5211656 (-)
RNA-Seq ExpressionCmaCh19G004260
SyntenyCmaCh19G004260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTGTCCTTTGGCCCGCGGTCGTTTATCTATACTAGAAATTTCAATAAATAAAAAAACAATTCATTAAATTTTCAATTTATCGAACTAACTTTTCATTGATGTATTGTTTCATCGAGATCAAATTGCAATTGCGATGTCATTTTCTTGTTCCCGAATGGTCTTCTTCAATTCTTTTAGGTTTATGCTCTACTCCGAGTAAAGATCTGCCCGATTTGGATTTGCACATATAGGACAAATGCCCCAATAGCATGTCTTTTTGCTACGACTTCTTTTTTTTTTTTCAATTTACTTCATGCTTGTAAACAAATATTCAACCAACGTATTCATCATATTACTCCATTAATTAACAGTTTTCTATCAATCCTATTTATAAATAGAATATGATACAAGTAGTAATCATAGAATAGATAGATTCCAAATTTCCAAATTGGGTTTTTTCTAAGCGGAGCCTGGATACTTCATTTTATTAGTACAACCGAGAAAACCATAAATTATTCTAATTGATAATATTAATCTGGATACCCCCCAAAAAATAGATCTAATTCCACTTCACGCTCCAAATTTTTGATAATGAAATCAATAATGAAATCAATCCGTCTTGGGCGAAAGAGAGGATACCTCGATCGGGGAAGAGAACGGGGAAATACCATATGACCCAATATATCTGACAAGTCGCACTATAGGTCAACCCACGATGCATCTTCATCTCCAGGACTTCGAAAAGGGACTTTTGGAATACCAACAGGCATTAAAGCAAACAAAAAAGAATTAAGTACTATAGCTCACTTTGATGTGGAAGCGTAACAACGGGTTTATTGTCTTAATAAATAAGATCGGCCTTTCTTTATCATATTTTATCTTTTAGCATATTTTATACATAGATTGAATAAGTTCATAAAAAAGGAAAACAGAAGGAATAAAGGAAAATTCTTCCGAATAGGTTTTTGAATGATGAACAAATATGTATACATTCACTCATAAAAAATAGGATCAATTCCCATCCACCATTGCGTATTGGTACTTATCGAGTATAGAATAGATCTGCTTCTTTTTGTTCCTACGAATAGAATAGAATTGTTCCATTATTACTAAAAGAATAGACCAAATATTAATCCTTTCGCCAAGATAATCCCCTCACCTCAAAGGGGGAGGTCCATAGCATAGTTTTTTTCAGTGCAATAAAGTTACATAGTGTCTATTTTTCGTTGATAAAGGGGTATTTCCATGGGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTAGCAATTCCATTTAGATAAATTAGATAAAGTAAGGGCTCAAAAGAAGAGATATCTCCAATCCTAATAGGCCGGAGCACATATTGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCTCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTAAAATAGCTCCATTGAGTCCCGTATCGCTTATAGAACAAATTCCTATAATTATGAAACCCATATGAGAGACGGAGGAATAAGCGATTCTTTTTTTTAAATTGCGTTGACCCGAAGATGTTGAAGCTGCATAGATTATTTGAATTATGCCTACTATGATCAACCAGGGTGAAAAAATAGAATGGGCGTGGGGTAATAATTCCATATTGATCCGAACCAATCCATATGCTCCCATTTTTAATAAGATTCCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTATCTGGTAACCATGTATGTAAGGGTATAATCGGTGATTTGACAGCAAAAGCAATAAGAAATCCGATATAGAATATTATTTCCAGTGCTATAGGATACGATTGA

mRNA sequence

ATGAGTTTTGTCCTTTGGCCCGCGGTTTATGCTCTACTCCGAGTAAAGATCTGCCCGATTTGGATTTGCACATATAGGACAAATGCCCCAATAGCATGTCTTTTTGCTACGACTTCTTTTTTTTTTTTCAATTTACTTCATGCTTGTAAACAAATATTCAACCAACGACTTCGAAAAGGGACTTTTGGAATACCAACAGGCATTAAAGCAAACAAAAAAGAATTAAGTACTATAGCTCACTTTGATGTGGAAGCATTGAATAAGTTCATAAAAAAGGAAAACAGAAGGAATAAAGGAAAATTCTTCCGAATAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCTCATCATATTGCAGCAGGATACGATTGA

Coding sequence (CDS)

ATGAGTTTTGTCCTTTGGCCCGCGGTTTATGCTCTACTCCGAGTAAAGATCTGCCCGATTTGGATTTGCACATATAGGACAAATGCCCCAATAGCATGTCTTTTTGCTACGACTTCTTTTTTTTTTTTCAATTTACTTCATGCTTGTAAACAAATATTCAACCAACGACTTCGAAAAGGGACTTTTGGAATACCAACAGGCATTAAAGCAAACAAAAAAGAATTAAGTACTATAGCTCACTTTGATGTGGAAGCATTGAATAAGTTCATAAAAAAGGAAAACAGAAGGAATAAAGGAAAATTCTTCCGAATAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCTCATCATATTGCAGCAGGATACGATTGA

Protein sequence

MSFVLWPAVYALLRVKICPIWICTYRTNAPIACLFATTSFFFFNLLHACKQIFNQRLRKGTFGIPTGIKANKKELSTIAHFDVEALNKFIKKENRRNKGKFFRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGYD
Homology
[Close]
BLAST of CmaCh19G004260 vs. ExPASy Swiss-Prot
Match: Q2QD63 (Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.1e-31
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. ExPASy Swiss-Prot
Match: Q09WZ1 (Photosystem II CP47 reaction center protein OS=Morus indica OX=248361 GN=psbB PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.4e-30
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  G+ CFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGVACFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. ExPASy Swiss-Prot
Match: Q0G9T6 (Photosystem II CP47 reaction center protein OS=Daucus carota OX=4039 GN=psbB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.8e-30
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GL CFGFGAFHVTGLYGPGIWVSDPYGLTG+VQ+VNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLAGLACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. ExPASy Swiss-Prot
Match: Q9BBQ8 (Photosystem II CP47 reaction center protein OS=Lotus japonicus OX=34305 GN=psbB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.8e-30
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GL CFGFGAFHVTGLYGPGIWVSDPYGLTGRVQ VNPAWGVEGFDPFVPGG+ASHHI
Sbjct: 144 FLAGLACFGFGAFHVTGLYGPGIWVSDPYGLTGRVQPVNPAWGVEGFDPFVPGGVASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. ExPASy Swiss-Prot
Match: B5LMP9 (Photosystem II CP47 reaction center protein OS=Cicer arietinum OX=3827 GN=psbB PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.5e-30
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  G+GCFGFGAFHVTGL+GPGIWVSDPYGLTGRVQ+VNPAWGV+GFDPFVPGGIASHHI
Sbjct: 144 FLAGVGCFGFGAFHVTGLFGPGIWVSDPYGLTGRVQSVNPAWGVDGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. ExPASy TrEMBL
Match: A0A218KG68 (Photosystem II CP47 reaction center protein OS=Cucumis sativus var. hardwickii OX=319220 GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. ExPASy TrEMBL
Match: A0A6H0ERV3 (Photosystem II CP47 reaction center protein OS=Trichosanthes kirilowii OX=3677 GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. ExPASy TrEMBL
Match: G3ETS3 (Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. melo OX=412675 GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. ExPASy TrEMBL
Match: A0A1X9Q1E5 (Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. ExPASy TrEMBL
Match: A0A1S4EU40 (Photosystem II CP47 reaction center protein OS=Cucumis melo OX=3656 GN=psbB PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. NCBI nr
Match: ALO21850.1 (PsbB [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. NCBI nr
Match: YP_009752607.1 (photosystem II 47 kDa protein [Trichosanthes homophylla] >QIT05088.1 photosystem II 47 kDa protein [Trichosanthes kirilowii] >QJD26496.1 PsbB [Trichosanthes kirilowii var. japonica] >QJD26670.1 PsbB [Trichosanthes rosthornii] >QIT05003.1 photosystem II 47 kDa protein [Trichosanthes homophylla] >QJD26321.1 PsbB [Trichosanthes kirilowii])

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. NCBI nr
Match: YP_009751764.1 (photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QIT04497.1 photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QJR52983.1 photosystem II CP47 chlorophyll apoprotein [Herpetospermum pedunculosum])

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. NCBI nr
Match: YP_247626.1 (photosystem II 47 kDa protein [Cucumis sativus] >CAJ00785.1 photosystem II 47kDa protein [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. NCBI nr
Match: YP_009752522.1 (photosystem II 47 kDa protein [Trichosanthes tubiflora] >QIT04918.1 photosystem II 47 kDa protein [Trichosanthes tubiflora])

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  GLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

[Close]
BLAST of CmaCh19G004260 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-30
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 102 FRIGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHI 161
           F  G+ CFGFGAFHVTGLYGPGIWVSDPYGLTG+VQ VNPAWGVEGFDPFVPGGIASHHI
Sbjct: 144 FLSGVACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQPVNPAWGVEGFDPFVPGGIASHHI 203

Query: 162 AAG 165
           AAG
Sbjct: 204 AAG 206

The following BLAST results are available for this feature:
BLAST of CmaCh19G004260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QD633.1e-3196.83Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB P... [more]
Q09WZ13.4e-3093.65Photosystem II CP47 reaction center protein OS=Morus indica OX=248361 GN=psbB PE... [more]
Q0G9T65.8e-3092.06Photosystem II CP47 reaction center protein OS=Daucus carota OX=4039 GN=psbB PE=... [more]
Q9BBQ85.8e-3092.06Photosystem II CP47 reaction center protein OS=Lotus japonicus OX=34305 GN=psbB ... [more]
B5LMP97.5e-3090.48Photosystem II CP47 reaction center protein OS=Cicer arietinum OX=3827 GN=psbB P... [more]
BLAST of CmaCh19G004260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A218KG681.1e-2896.83Photosystem II CP47 reaction center protein OS=Cucumis sativus var. hardwickii O... [more]
A0A6H0ERV31.1e-2896.83Photosystem II CP47 reaction center protein OS=Trichosanthes kirilowii OX=3677 G... [more]
G3ETS31.1e-2896.83Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. melo OX=41267... [more]
A0A1X9Q1E51.1e-2896.83Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB P... [more]
A0A1S4EU401.1e-2896.83Photosystem II CP47 reaction center protein OS=Cucumis melo OX=3656 GN=psbB PE=3... [more]
BLAST of CmaCh19G004260 vs. NCBI nr
Match NameE-valueIdentityDescription
ALO21850.12.3e-2896.83PsbB [Cucurbita argyrosperma subsp. sororia][more]
YP_009752607.12.3e-2896.83photosystem II 47 kDa protein [Trichosanthes homophylla] >QIT05088.1 photosystem... [more]
YP_009751764.12.3e-2896.83photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QIT04497.1 photosys... [more]
YP_247626.12.3e-2896.83photosystem II 47 kDa protein [Cucumis sativus] >CAJ00785.1 photosystem II 47kDa... [more]
YP_009752522.12.3e-2896.83photosystem II 47 kDa protein [Trichosanthes tubiflora] >QIT04918.1 photosystem ... [more]
BLAST of CmaCh19G004260 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00680.12.0e-3090.48photosystem II reaction center protein B [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 102..164
e-value: 4.1E-23
score: 81.9
IPR000932Photosystem antenna protein-likePANTHERPTHR33180PHOTOSYSTEM II CP43 REACTION CENTER PROTEINcoord: 102..164
NoneNo IPR availablePANTHERPTHR33180:SF20PHOTOSYSTEM II CP47 REACTION CENTER PROTEINcoord: 102..164
IPR036001Photosystem antenna protein-like superfamilySUPERFAMILY161077Photosystem II antenna protein-likecoord: 102..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G004260.1CmaCh19G004260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity