CmaCh19G003760 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G003760
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptioncytochrome c oxidase subunit 6b-3-like
LocationCma_Chr19: 4220263 .. 4221809 (+)
RNA-Seq ExpressionCmaCh19G003760
SyntenyCmaCh19G003760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAATCGAAAAAAAAAGGCAAAGCAATAACAAAGGTAATAATGTCGGCGCCTCAGCGACCCAGAGATATCAGCAAGGTGGCTCGAGGCGAGCAAGCCCCAAGGCCCGTTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCTTCTTCCTCCTCCTCCGCTTCCTCCGCCCAGACCAACCTTGACGGTAACGGCAATCACCGCCACGGTGGCAAAGACGAATACGGTAAGGTCGGAAATTTTTTTAAAAGTAAATTAACGTTTAAATGTCTTAATATTTCTTATTAGATGAACAATATTCTCTACCATAATATGATATTATCCACTTTGATTATAAGCTCTCATGGCTTTACTGAATTTCTCAAACGCTTCACGCCCAATAAAATATATTTCTTAATTTTAAACATTAAAATTAATATTGTAATTGTGAATGTTTGATTAATCCACCACACCTAAATGGTGTGAAAGTTATCTTATTTATGAATTACAAGGATATGGAAATAGTAATAAATGGAAATAATAAAGATAGCAAATATTAAATATTTGTCTTATAATAAAATATCAAATATAATATATATGGTAAACTATAATTTATTACTAAATATTCTTAATCCTAATAGTAGTTTTTTAGGTGAGCAATGGAATCCAACATTAAAAAAAACAAAATTTATAATAATAGTATTTTAATTTTTTATAATTATGGAAGGGTATTAATAATTTTTTAAAAAATTTAAGAATATTTTTTAAATAATGATTTAAGTATTTATTATGTTTTTAAAAGTAAGTAATATTGTATAATGAGGGTGTAGTAGGTGGTGGTGGAAGAGGGAGTAGAGACGGCACCAAATGATATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTACACACGCTATTTGGAATACCATAGGTAAATTATAATTACTATATACTTCATTATTAATTCATAACCTTGTACCACGTTTAATTTATTTTAGTTTAATTGTTTCAGCTGCCTACAGAAGAAGGGGGAACACGTGCCTGAATGCGACAAGTTCGCCAAATATTACCGTTCTCTATGCCCCGCTCAATGGGTACCTCACATTTAAATTTTTTAAAATTATGTTCAACAATATTTTATTATCTATTTCATTTAGTTTTTGTTGTTGTAGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTTCGATATAAAGTTGTTAAGGTTGTGTTTGAATAAAGAATGAATAGTACCAGTCGAAGCAGTTTATTCTCAAGAATTTACGTCCATACTTCTTTCCCAACTTAGGTTTTTAAGTAGTTTAGAGTAAGAAATGTAGCTCGATAAGCACGCACGTTCTACTGCTGAGTTAGTAGCACGTCAGGATTTGCAGAAATTTTATCCCTTTATTTCCTTTTTTCGCTTCCATGTTTAGAACGAATGCGCTCTTGGTTTGTAGTTAGGACGATAAAATTGTCGTTTTTATTTATAAATATCAAAAAGTGGCAATTAGTCGTGTAAGGGTTTAAAATTGGGTATCTAATAATCTCT

mRNA sequence

AATAATCGAAAAAAAAAGGCAAAGCAATAACAAAGGTAATAATGTCGGCGCCTCAGCGACCCAGAGATATCAGCAAGGTGGCTCGAGGCGAGCAAGCCCCAAGGCCCGTTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCTTCTTCCTCCTCCTCCGCTTCCTCCGCCCAGACCAACCTTGACGGTAACGGCAATCACCGCCACGGTGGCAAAGACGAATACGGTAAGGTGGTGGTGGAAGAGGGAGTAGAGACGGCACCAAATGATATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTACACACGCTATTTGGAATACCATAGCTGCCTACAGAAGAAGGGGGAACACGTGCCTGAATGCGACAAGTTCGCCAAATATTACCGTTCTCTATGCCCCGCTCAATGGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTTCGATATAAAGTTGTTAAGGTTGTGTTTGAATAAAGAATGAATAGTACCAGTCGAAGCAGTTTATTCTCAAGAATTTACGTCCATACTTCTTTCCCAACTTAGGTTTTTAAGTAGTTTAGAGTAAGAAATGTAGCTCGATAAGCACGCACGTTCTACTGCTGAGTTAGTAGCACGTCAGGATTTGCAGAAATTTTATCCCTTTATTTCCTTTTTTCGCTTCCATGTTTAGAACGAATGCGCTCTTGGTTTGTAGTTAGGACGATAAAATTGTCGTTTTTATTTATAAATATCAAAAAGTGGCAATTAGTCGTGTAAGGGTTTAAAATTGGGTATCTAATAATCTCT

Coding sequence (CDS)

ATGTCGGCGCCTCAGCGACCCAGAGATATCAGCAAGGTGGCTCGAGGCGAGCAAGCCCCAAGGCCCGTTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCTTCTTCCTCCTCCTCCGCTTCCTCCGCCCAGACCAACCTTGACGGTAACGGCAATCACCGCCACGGTGGCAAAGACGAATACGGTAAGGTGGTGGTGGAAGAGGGAGTAGAGACGGCACCAAATGATATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTACACACGCTATTTGGAATACCATAGCTGCCTACAGAAGAAGGGGGAACACGTGCCTGAATGCGACAAGTTCGCCAAATATTACCGTTCTCTATGCCCCGCTCAATGGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTTCGATATAA

Protein sequence

MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKDEYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQWIEKWNEQRELGIFPGSI
Homology
[Close]
BLAST of CmaCh19G003760 vs. ExPASy Swiss-Prot
Match: Q9S7L9 (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-27
Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 0 

Query: 15  RGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKDEYGKVVVEEGVETA 74
           + E AP    E   V+   P ++  +A       + N N  +  ++   +   E  +ETA
Sbjct: 68  KSESAP----ESTEVASEAPAAAEDNAEETPAAAEEN-NDENASEEVAEETPDEIKLETA 127

Query: 75  PNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQWIEKWNEQRE 134
           P D RFP TNQTRHC+TRY+EYH C+  KG+  PECDKFAK+YRSLCP++W+++WNEQRE
Sbjct: 128 PADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWNEQRE 187

Query: 135 LGIFPGSI 143
            G FPG +
Sbjct: 188 NGTFPGPL 190

[Close]
BLAST of CmaCh19G003760 vs. ExPASy Swiss-Prot
Match: Q9SUD3 (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-26
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 0 

Query: 71  VETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQWIEKWN 130
           ++TAP D RFP TNQTRHC+TRY+E+H C   KGE   EC++FAKYYR+LCP +W++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDKWN 66

Query: 131 EQRELGIFPGSI 143
           EQRE G FPG +
Sbjct: 67  EQRETGTFPGPL 78

[Close]
BLAST of CmaCh19G003760 vs. ExPASy Swiss-Prot
Match: Q945L0 (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-26
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 0 

Query: 71  VETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQWIEKWN 130
           ++TAP D RFP TNQTRHC+TRY+E+H C   KGE   +C++FAKYYR+LCP +W++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWN 66

Query: 131 EQRELGIFPGSI 143
           EQRE G FPG +
Sbjct: 67  EQRESGTFPGPL 78

[Close]
BLAST of CmaCh19G003760 vs. ExPASy Swiss-Prot
Match: Q9LPJ2 (Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN=At1g32710 PE=3 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-18
Identity = 49/123 (39.84%), Postives = 65/123 (52.85%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKDEYGKV 65
           R RDISKVARG+QAPRP H  GTVS PP   ++  A             + G        
Sbjct: 13  RSRDISKVARGQQAPRPAHTPGTVSPPPENEATFRA-------------KRGDSGRETDA 72

Query: 66  VVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQW 125
            VEE         RFP TN+TRHC+ R+++YH C++K G    +C+    Y RS+CP + 
Sbjct: 73  AVEE---------RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEEL 113

Query: 126 IEK 129
           + K
Sbjct: 133 VSK 113

[Close]
BLAST of CmaCh19G003760 vs. ExPASy Swiss-Prot
Match: Q01519 (Cytochrome c oxidase subunit 12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=COX12 PE=1 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-17
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 71  VETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQWIEKWN 130
           + T   D RFP  NQT+HC+  Y++YH C+  KGE    C  F K Y +LCP  WIEKW+
Sbjct: 9   LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWD 68

Query: 131 EQRELGIFPGSI 143
           +QRE GIF G I
Sbjct: 69  DQREKGIFAGDI 80

[Close]
BLAST of CmaCh19G003760 vs. ExPASy TrEMBL
Match: A0A6J1IE20 (cytochrome c oxidase subunit 6b-3-like OS=Cucurbita maxima OX=3661 GN=LOC111471817 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.7e-78
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD 60
           MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD 60

Query: 61  EYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSL 120
           EYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSL
Sbjct: 61  EYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSL 120

Query: 121 CPAQWIEKWNEQRELGIFPGSI 143
           CPAQWIEKWNEQRELGIFPGSI
Sbjct: 121 CPAQWIEKWNEQRELGIFPGSI 142

[Close]
BLAST of CmaCh19G003760 vs. ExPASy TrEMBL
Match: A0A6J1F3D0 (cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC111439604 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.3e-69
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD 60
           MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP SSSSASSAQTNLDGN + RHGGKD
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP-SSSSASSAQTNLDGNSDRRHGGKD 60

Query: 61  EYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSL 120
           +  KVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHS LQKKGEH PECDKFAKYYRSL
Sbjct: 61  KDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSL 120

Query: 121 CPAQWIEKWNEQRELGIFPGSI 143
           CP +WIEKWNEQRELGIFPG I
Sbjct: 121 CPVEWIEKWNEQRELGIFPGPI 141

[Close]
BLAST of CmaCh19G003760 vs. ExPASy TrEMBL
Match: A0A0A0LEH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 106/136 (77.94%), Postives = 117/136 (86.03%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGN-GNHRHGGKDEYGK 65
           R RD+SKVARGEQAPRP HEYGTVSKPPPP SSSS  SAQTNLDGN  + R G +D   K
Sbjct: 13  RSRDMSKVARGEQAPRPAHEYGTVSKPPPP-SSSSVPSAQTNLDGNDDDRRRGSEDRDNK 72

Query: 66  VVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQ 125
           VV++EGV TAP+D+RFPFTNQTRHCY RYLEYH C+QKKGEH PEC KFAKYYRSLCP +
Sbjct: 73  VVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGE 132

Query: 126 WIEKWNEQRELGIFPG 141
           W+EKWNEQRELG+FPG
Sbjct: 133 WVEKWNEQRELGVFPG 147

[Close]
BLAST of CmaCh19G003760 vs. ExPASy TrEMBL
Match: A0A5D3E4S8 (Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004020 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.7e-54
Identity = 105/140 (75.00%), Postives = 116/140 (82.86%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGG---KDEY 65
           R RD+SKVARGEQAPRP HEYGTVSKPPPP SS+S  SAQTN D    HR  G   KD+ 
Sbjct: 13  RSRDVSKVARGEQAPRPAHEYGTVSKPPPP-SSTSVPSAQTNDD----HRRSGSEDKDKD 72

Query: 66  GKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCP 125
            KVV++EGVETAP+D+RFPFTNQTRHCY RYLEYH C+QKKGEH PEC KFA YYRSLCP
Sbjct: 73  NKVVMDEGVETAPSDLRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFANYYRSLCP 132

Query: 126 AQWIEKWNEQRELGIFPGSI 143
            +W+EKWNEQRELG+FPG I
Sbjct: 133 GEWVEKWNEQRELGVFPGPI 147

[Close]
BLAST of CmaCh19G003760 vs. ExPASy TrEMBL
Match: A0A1S3CQ05 (putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC103503497 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.7e-54
Identity = 105/140 (75.00%), Postives = 116/140 (82.86%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGG---KDEY 65
           R RD+SKVARGEQAPRP HEYGTVSKPPPP SS+S  SAQTN D    HR  G   KD+ 
Sbjct: 13  RSRDVSKVARGEQAPRPAHEYGTVSKPPPP-SSTSVPSAQTNDD----HRRSGSEDKDKD 72

Query: 66  GKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCP 125
            KVV++EGVETAP+D+RFPFTNQTRHCY RYLEYH C+QKKGEH PEC KFA YYRSLCP
Sbjct: 73  NKVVMDEGVETAPSDLRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFANYYRSLCP 132

Query: 126 AQWIEKWNEQRELGIFPGSI 143
            +W+EKWNEQRELG+FPG I
Sbjct: 133 GEWVEKWNEQRELGVFPGPI 147

[Close]
BLAST of CmaCh19G003760 vs. NCBI nr
Match: XP_022973259.1 (cytochrome c oxidase subunit 6b-3-like [Cucurbita maxima])

HSP 1 Score: 301.6 bits (771), Expect = 3.6e-78
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD 60
           MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD 60

Query: 61  EYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSL 120
           EYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSL
Sbjct: 61  EYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSL 120

Query: 121 CPAQWIEKWNEQRELGIFPGSI 143
           CPAQWIEKWNEQRELGIFPGSI
Sbjct: 121 CPAQWIEKWNEQRELGIFPGSI 142

[Close]
BLAST of CmaCh19G003760 vs. NCBI nr
Match: XP_022932983.1 (cytochrome c oxidase subunit 6b-3-like [Cucurbita moschata])

HSP 1 Score: 270.8 bits (691), Expect = 6.8e-69
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD 60
           MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP SSSSASSAQTNLDGN + RHGGKD
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP-SSSSASSAQTNLDGNSDRRHGGKD 60

Query: 61  EYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSL 120
           +  KVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHS LQKKGEH PECDKFAKYYRSL
Sbjct: 61  KDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSL 120

Query: 121 CPAQWIEKWNEQRELGIFPGSI 143
           CP +WIEKWNEQRELGIFPG I
Sbjct: 121 CPVEWIEKWNEQRELGIFPGPI 141

[Close]
BLAST of CmaCh19G003760 vs. NCBI nr
Match: XP_023542926.1 (cytochrome c oxidase subunit 6b-3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 2.6e-68
Identity = 130/143 (90.91%), Postives = 135/143 (94.41%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD 60
           MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP SSSSASSAQTNLDGNG+ RHGGKD
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP-SSSSASSAQTNLDGNGDRRHGGKD 60

Query: 61  EYGK-VVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRS 120
           E  K VVVEEGVETAPNDMRFPFTNQTRHCYTRYL+YHSC++KKGEH PEC KFAKYYRS
Sbjct: 61  EDSKVVVVEEGVETAPNDMRFPFTNQTRHCYTRYLDYHSCVRKKGEHAPECHKFAKYYRS 120

Query: 121 LCPAQWIEKWNEQRELGIFPGSI 143
           LCPA+WIEKWNEQRELGIFPG I
Sbjct: 121 LCPAEWIEKWNEQRELGIFPGPI 142

[Close]
BLAST of CmaCh19G003760 vs. NCBI nr
Match: XP_023542925.1 (cytochrome c oxidase subunit 6b-3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 3.4e-68
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD 60
           MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP SSSSASSAQTNLDGNG+ RHGGKD
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP-SSSSASSAQTNLDGNGDRRHGGKD 60

Query: 61  EYGK--VVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYR 120
           E  K  VVVEEGVETAPNDMRFPFTNQTRHCYTRYL+YHSC++KKGEH PEC KFAKYYR
Sbjct: 61  EDSKVVVVVEEGVETAPNDMRFPFTNQTRHCYTRYLDYHSCVRKKGEHAPECHKFAKYYR 120

Query: 121 SLCPAQWIEKWNEQRELGIFPGSI 143
           SLCPA+WIEKWNEQRELGIFPG I
Sbjct: 121 SLCPAEWIEKWNEQRELGIFPGPI 143

[Close]
BLAST of CmaCh19G003760 vs. NCBI nr
Match: XP_031737981.1 (cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 3.3e-55
Identity = 106/136 (77.94%), Postives = 117/136 (86.03%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGN-GNHRHGGKDEYGK 65
           R RD+SKVARGEQAPRP HEYGTVSKPPPP SSSS  SAQTNLDGN  + R G +D   K
Sbjct: 13  RSRDMSKVARGEQAPRPAHEYGTVSKPPPP-SSSSVPSAQTNLDGNDDDRRRGSEDRDNK 72

Query: 66  VVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQ 125
           VV++EGV TAP+D+RFPFTNQTRHCY RYLEYH C+QKKGEH PEC KFAKYYRSLCP +
Sbjct: 73  VVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGE 132

Query: 126 WIEKWNEQRELGIFPG 141
           W+EKWNEQRELG+FPG
Sbjct: 133 WVEKWNEQRELGVFPG 147

[Close]
BLAST of CmaCh19G003760 vs. TAIR 10
Match: AT1G22450.1 (cytochrome C oxidase 6B )

HSP 1 Score: 124.0 bits (310), Expect = 9.5e-29
Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 0 

Query: 15  RGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKDEYGKVVVEEGVETA 74
           + E AP    E   V+   P ++  +A       + N N  +  ++   +   E  +ETA
Sbjct: 68  KSESAP----ESTEVASEAPAAAEDNAEETPAAAEEN-NDENASEEVAEETPDEIKLETA 127

Query: 75  PNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQWIEKWNEQRE 134
           P D RFP TNQTRHC+TRY+EYH C+  KG+  PECDKFAK+YRSLCP++W+++WNEQRE
Sbjct: 128 PADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWNEQRE 187

Query: 135 LGIFPGSI 143
            G FPG +
Sbjct: 188 NGTFPGPL 190

[Close]
BLAST of CmaCh19G003760 vs. TAIR 10
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-27
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 0 

Query: 71  VETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQWIEKWN 130
           ++TAP D RFP TNQTRHC+TRY+E+H C   KGE   EC++FAKYYR+LCP +W++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDKWN 66

Query: 131 EQRELGIFPGSI 143
           EQRE G FPG +
Sbjct: 67  EQRETGTFPGPL 78

[Close]
BLAST of CmaCh19G003760 vs. TAIR 10
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-27
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 0 

Query: 71  VETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQWIEKWN 130
           ++TAP D RFP TNQTRHC+TRY+E+H C   KGE   +C++FAKYYR+LCP +W++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWN 66

Query: 131 EQRELGIFPGSI 143
           EQRE G FPG +
Sbjct: 67  EQRESGTFPGPL 78

[Close]
BLAST of CmaCh19G003760 vs. TAIR 10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-19
Identity = 49/123 (39.84%), Postives = 65/123 (52.85%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKDEYGKV 65
           R RDISKVARG+QAPRP H  GTVS PP   ++  A             + G        
Sbjct: 13  RSRDISKVARGQQAPRPAHTPGTVSPPPENEATFRA-------------KRGDSGRETDA 72

Query: 66  VVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQW 125
            VEE         RFP TN+TRHC+ R+++YH C++K G    +C+    Y RS+CP + 
Sbjct: 73  AVEE---------RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEEL 113

Query: 126 IEK 129
           + K
Sbjct: 133 VSK 113

The following BLAST results are available for this feature:
BLAST of CmaCh19G003760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9S7L91.3e-2746.09Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=... [more]
Q9SUD31.5e-2663.89Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=... [more]
Q945L05.6e-2662.50Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=... [more]
Q9LPJ22.5e-1839.84Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN... [more]
Q015191.3e-1751.39Cytochrome c oxidase subunit 12, mitochondrial OS=Saccharomyces cerevisiae (stra... [more]
BLAST of CmaCh19G003760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IE201.7e-78100.00cytochrome c oxidase subunit 6b-3-like OS=Cucurbita maxima OX=3661 GN=LOC1114718... [more]
A0A6J1F3D03.3e-6991.55cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A0A0LEH81.6e-5577.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1[more]
A0A5D3E4S88.7e-5475.00Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S3CQ058.7e-5475.00putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC1035... [more]
BLAST of CmaCh19G003760 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022973259.13.6e-78100.00cytochrome c oxidase subunit 6b-3-like [Cucurbita maxima][more]
XP_022932983.16.8e-6991.55cytochrome c oxidase subunit 6b-3-like [Cucurbita moschata][more]
XP_023542926.12.6e-6890.91cytochrome c oxidase subunit 6b-3-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023542925.13.4e-6890.28cytochrome c oxidase subunit 6b-3-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_031737981.13.3e-5577.94cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus][more]
BLAST of CmaCh19G003760 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G22450.19.5e-2946.09cytochrome C oxidase 6B [more]
AT4G28060.11.1e-2763.89Cytochrome c oxidase, subunit Vib family protein [more]
AT5G57815.14.0e-2762.50Cytochrome c oxidase, subunit Vib family protein [more]
AT1G32710.11.8e-1939.84Cytochrome c oxidase, subunit Vib family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036549Cytochrome c oxidase, subunit VIb superfamilyGENE3D1.10.10.140Cytochrome c oxidase, subunit VIbcoord: 66..142
e-value: 1.5E-31
score: 110.1
IPR036549Cytochrome c oxidase, subunit VIb superfamilySUPERFAMILY47694Cytochrome c oxidase subunit hcoord: 71..141
IPR003213Cytochrome c oxidase, subunit VIbPFAMPF02297COX6Bcoord: 79..133
e-value: 2.4E-16
score: 59.7
IPR003213Cytochrome c oxidase, subunit VIbCDDcd00926Cyt_c_Oxidase_VIbcoord: 72..140
e-value: 1.77025E-35
score: 115.483
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..52
NoneNo IPR availablePANTHERPTHR46281:SF14CYTOCHROME C OXIDASE SUBUNIT 6B-1coord: 8..141
NoneNo IPR availablePANTHERPTHR46281CYTOCHROME C OXIDASE SUBUNIT 6Bcoord: 8..141
NoneNo IPR availablePROSITEPS51808CHCHcoord: 86..129
score: 12.508162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G003760.1CmaCh19G003760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045277 respiratory chain complex IV