CmaCh19G003570 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G003570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	UPF0481 protein At3g47200-like
Location	Cma_Chr19: 3852773 .. 3853597 (-)
RNA-Seq Expression	CmaCh19G003570
Synteny	CmaCh19G003570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGGTAGTAGGAACGGACAACTTTGTGGTAATGTTGTATCATGGATCAAAACAATGCTAGAGCAACTGCCTGTTGTTAATGTAGGATGTAGTATCTATCGAGTCCCCAAACTGTTACGTGAGATGAATAATATAGCCTTTACCCCCCAAGTCATTTCCATTGGCCCGTTTCACCATCATAGTCGAGATGATTTGATAGTCAAAGAGCAATATAAGCTTCAAGAACTTGCTAACTTTCTATTTCGAATGATGAACATGAGCTCGGTGGAATTTCTTGCGAAAACTACTCAAACTTGGGTAAAAGACGCTTGAGATTACTATGCAGAACCTATAAACATGAACGACGAGGATTTTATTAAGATGTTGCTCGTGAATGGTTGTTTTATAGCGGAGTTGCTTATATTACATTATGGCCAATACAGCTGAGATGCATTCATTCGAATTAAACACAAAGTAGATCTTCAATTCTACAAAAGATTTCCTTATATAGATGCTGATTTGGTCAAGTTGGAAAATCAAATTCCTTTCTTTGTTCTTCACCGTCTATACCTTGTAAAATAAAAGGATCCCTCCATCTCCTTTATAATTCTTACAAAAATATTTTTTCATCGTGGGATTGTAAATAATTACTATCTTCCTGATCCCTTGTTGAAGAAATGTCCAAAGCATTTCATCGATTTCTTAAGCTTTTTCTTCGTCCCCACGATATCTTCTAAGAACAATAGTAAAGAAGAAAAATCAATTATTCCTCCATCGATAACTGAGCTTCAAAAATGGCAAATGTTTTATGAATGTGAGCTTCAAAAATGGGGTTTTTGA

mRNA sequence

ATGGCGGAAGATGCTGATTTGGTCAAGTTGGAAAATCAAATTCCTTTCTTTGTTCTTCACCGTCTATACCTTGATCCCTCCATCTCCTTTATAATTCTTACAAAAATATTTTTTCATCGTGGGATTGTAAATAATTACTATCTTCCTGATCCCTTGTTGAAGAAATGTCCAAAGCATTTCATCGATTTCTTAAGCTTTTTCTTCGTCCCCACGATATCTTCTAAGAACAATAGTAAAGAAGAAAAATCAATTATTCCTCCATCGATAACTGAGCTTCAAAAATGGCAAATGTTTTATGAATGTGAGCTTCAAAAATGGGGTTTTTGA

Coding sequence (CDS)

ATGGCGGAAGATGCTGATTTGGTCAAGTTGGAAAATCAAATTCCTTTCTTTGTTCTTCACCGTCTATACCTTGATCCCTCCATCTCCTTTATAATTCTTACAAAAATATTTTTTCATCGTGGGATTGTAAATAATTACTATCTTCCTGATCCCTTGTTGAAGAAATGTCCAAAGCATTTCATCGATTTCTTAAGCTTTTTCTTCGTCCCCACGATATCTTCTAAGAACAATAGTAAAGAAGAAAAATCAATTATTCCTCCATCGATAACTGAGCTTCAAAAATGGCAAATGTTTTATGAATGTGAGCTTCAAAAATGGGGTTTTTGA

Protein sequence

MAEDADLVKLENQIPFFVLHRLYLDPSISFIILTKIFFHRGIVNNYYLPDPLLKKCPKHFIDFLSFFFVPTISSKNNSKEEKSIIPPSITELQKWQMFYECELQKWGF

Homology

[Close]

BLAST of CmaCh19G003570 vs. ExPASy TrEMBL
Match: A0A6J1EY59 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111439558 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.0e-35
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 5   ADLVKLENQIPFFVLHRLY-----LDPSISFIILTKIFFHRGIVNNYYLPDPLLKKCPKH 64
           ADLVKLENQIPFFVL  L+      DPS+SFI LTKIFFH GIVNNYYLP PLLKKCPKH
Sbjct: 167 ADLVKLENQIPFFVLQGLFDLVKQKDPSVSFITLTKIFFHHGIVNNYYLPHPLLKKCPKH 226

Query: 65  FIDFLSFFFVPTISSKNNSKEEKSIIPPSITELQK 95
           FIDFLSFFFVPTI SKNNSKEEKSIIPPSITEL++
Sbjct: 227 FIDFLSFFFVPTIPSKNNSKEEKSIIPPSITELRE 261

[Close]

BLAST of CmaCh19G003570 vs. ExPASy TrEMBL
Match: A0A6J1EXW9 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111439625 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.3e-27
Identity = 69/97 (71.13%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 5   ADLVKLENQIPFFVLHRLY-----LDP--SISFIILTKIFFHRGIVNNYYLPDPLLKKCP 64
           ADLVKLENQIPFFVL  L+      DP   + F  LT +FF  GIVNNYYL +PL KKCP
Sbjct: 168 ADLVKLENQIPFFVLQHLFNLIKQKDPFQPVPFDSLTTLFFRYGIVNNYYLSNPLSKKCP 227

Query: 65  KHFIDFLSFFFVPTISSKNNSKEEKSIIPPSITELQK 95
           KHFIDFLSFF VPTI SKNNSKEE+SIIPPSITEL +
Sbjct: 228 KHFIDFLSFFLVPTIPSKNNSKEEESIIPPSITELHE 264

[Close]

BLAST of CmaCh19G003570 vs. ExPASy TrEMBL
Match: A0A6J1HD21 (putative UPF0481 protein At3g02645 OS=Cucurbita moschata OX=3662 GN=LOC111462977 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.3e-16
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 6   DLVKLENQIPFFVLHRLY-LDP---SISFIILTKIFFHRGIVNNYYLPDPLLKKCPKHFI 65
           DL+ LENQ+PFF+L RL+ L P   SISF  LT +FF R +V+NY L D LL+K PKHFI
Sbjct: 171 DLIMLENQVPFFLLERLFGLIPESISISFEYLTGMFFKRELVDNYSLKDILLRK-PKHFI 230

Query: 66  DFLSFFFVPTISSKNNSKEEKSIIPPSITELQK 95
           DFLSF+FV   S +NN+     I PPSITEL K
Sbjct: 231 DFLSFYFVSNTSQENNN-NNSPITPPSITELHK 261

[Close]

BLAST of CmaCh19G003570 vs. ExPASy TrEMBL
Match: A0A6J1HDJ8 (putative UPF0481 protein At3g02645 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462537 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 6   DLVKLENQIPFFVLHRLY-LDP---SISFIILTKIFFHRGIVNNYYLPDPLLKKCPKHFI 65
           DL+ LENQ+PFF+L RL+ L P   SISFI LT IFF R +V+NY L D L    PKH +
Sbjct: 171 DLIMLENQVPFFLLERLFGLIPNITSISFIELTYIFFRRELVDNYSLSD-LSSIKPKHLV 230

Query: 66  DFLSFFFVPTISSKNNSKEEKSIIPPSITELQK 95
           DFLSF+FV   S +NN+   + I PPSITEL +
Sbjct: 231 DFLSFYFVSKTSLENNN-NNRPITPPSITELHE 261

[Close]

BLAST of CmaCh19G003570 vs. ExPASy TrEMBL
Match: A0A6J1K322 (UPF0481 protein At3g47200-like OS=Cucurbita maxima OX=3661 GN=LOC111491940 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.3e-11
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 6   DLVKLENQIPFFVLHRLYL----DPSISFIILTKIFFHRGIVNNYYLPDPLLKKCPKHFI 65
           DL+ LEN++PFF+L RL+       SISF+ LT +FF   +V+NY L D L    PK+F 
Sbjct: 54  DLIMLENRVPFFLLERLFYLILNTISISFVYLTYMFFKLELVDNYSLSD-LSSIKPKYFF 113

Query: 66  DFLSFFFVPTISSKNNSKEEKSIIPPSITELQK 95
           D LSF+FV + +S  N+     I PPSITEL +
Sbjct: 114 DLLSFYFVVSKTSLENNNNNSPITPPSITELHE 145

[Close]

BLAST of CmaCh19G003570 vs. NCBI nr
Match: XP_022932942.1 (UPF0481 protein At3g47200-like [Cucurbita moschata])

HSP 1 Score: 157.1 bits (396), Expect = 8.3e-35
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 5   ADLVKLENQIPFFVLHRLY-----LDPSISFIILTKIFFHRGIVNNYYLPDPLLKKCPKH 64
           ADLVKLENQIPFFVL  L+      DPS+SFI LTKIFFH GIVNNYYLP PLLKKCPKH
Sbjct: 167 ADLVKLENQIPFFVLQGLFDLVKQKDPSVSFITLTKIFFHHGIVNNYYLPHPLLKKCPKH 226

Query: 65  FIDFLSFFFVPTISSKNNSKEEKSIIPPSITELQK 95
           FIDFLSFFFVPTI SKNNSKEEKSIIPPSITEL++
Sbjct: 227 FIDFLSFFFVPTIPSKNNSKEEKSIIPPSITELRE 261

[Close]

BLAST of CmaCh19G003570 vs. NCBI nr
Match: XP_023548954.1 (UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-30
Identity = 73/95 (76.84%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 5   ADLVKLENQIPFFVLHRLY-----LDPSISFIILTKIFFHRGIVNNYYLPDPLLKKCPKH 64
           ADLVKLENQIPFFVL RL+      DPSISFI LT +FFH GIVN YYL    L+KCPKH
Sbjct: 167 ADLVKLENQIPFFVLQRLFDLVKQKDPSISFIRLTTVFFHHGIVNKYYLSSLWLEKCPKH 226

Query: 65  FIDFLSFFFVPTISSKNNSKEEKSIIPPSITELQK 95
           FIDFLSFFFVPTI SKNNSKEE+SIIPPSITEL++
Sbjct: 227 FIDFLSFFFVPTIPSKNNSKEEESIIPPSITELRE 261

[Close]

BLAST of CmaCh19G003570 vs. NCBI nr
Match: XP_022932991.1 (UPF0481 protein At3g47200-like [Cucurbita moschata])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 69/97 (71.13%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 5   ADLVKLENQIPFFVLHRLY-----LDP--SISFIILTKIFFHRGIVNNYYLPDPLLKKCP 64
           ADLVKLENQIPFFVL  L+      DP   + F  LT +FF  GIVNNYYL +PL KKCP
Sbjct: 168 ADLVKLENQIPFFVLQHLFNLIKQKDPFQPVPFDSLTTLFFRYGIVNNYYLSNPLSKKCP 227

Query: 65  KHFIDFLSFFFVPTISSKNNSKEEKSIIPPSITELQK 95
           KHFIDFLSFF VPTI SKNNSKEE+SIIPPSITEL +
Sbjct: 228 KHFIDFLSFFLVPTIPSKNNSKEEESIIPPSITELHE 264

[Close]

BLAST of CmaCh19G003570 vs. NCBI nr
Match: XP_023548424.1 (UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 64/97 (65.98%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 5   ADLVKLENQIPFFVLHRLY-----LDP--SISFIILTKIFFHRGIVNNYYLPDPLLKKCP 64
           ADLVKLENQIPFFVL  L+      DP   + F  LT +FFH GIVNNYYL +PL KKCP
Sbjct: 168 ADLVKLENQIPFFVLRCLFNLIKQKDPFQPVPFDSLTTVFFHYGIVNNYYLSNPLSKKCP 227

Query: 65  KHFIDFLSFFFVPTISSKNNSKEEKSIIPPSITELQK 95
           KHFIDFLSFFF+ TI SK+NS + +SIIPP ITEL +
Sbjct: 228 KHFIDFLSFFFIHTIPSKDNSNKTRSIIPPLITELHE 264

[Close]

BLAST of CmaCh19G003570 vs. NCBI nr
Match: XP_022962577.1 (putative UPF0481 protein At3g02645 [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 6   DLVKLENQIPFFVLHRLY-LDP---SISFIILTKIFFHRGIVNNYYLPDPLLKKCPKHFI 65
           DL+ LENQ+PFF+L RL+ L P   SISF  LT +FF R +V+NY L D LL+K PKHFI
Sbjct: 171 DLIMLENQVPFFLLERLFGLIPESISISFEYLTGMFFKRELVDNYSLKDILLRK-PKHFI 230

Query: 66  DFLSFFFVPTISSKNNSKEEKSIIPPSITELQK 95
           DFLSF+FV   S +NN+     I PPSITEL K
Sbjct: 231 DFLSFYFVSNTSQENNN-NNSPITPPSITELHK 261

The following BLAST results are available for this feature:

BLAST of CmaCh19G003570 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G003570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EY59	4.0e-35	83.16	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111439558 PE=...	[more]
A0A6J1EXW9	5.3e-27	71.13	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111439625 PE=...	[more]
A0A6J1HD21	9.3e-16	59.14	putative UPF0481 protein At3g02645 OS=Cucurbita moschata OX=3662 GN=LOC111462977...	[more]
A0A6J1HDJ8	1.5e-13	55.91	putative UPF0481 protein At3g02645 isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1K322	5.3e-11	47.31	UPF0481 protein At3g47200-like OS=Cucurbita maxima OX=3661 GN=LOC111491940 PE=4 ...	[more]

BLAST of CmaCh19G003570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932942.1	8.3e-35	83.16	UPF0481 protein At3g47200-like [Cucurbita moschata]	[more]
XP_023548954.1	2.1e-30	76.84	UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]	[more]
XP_022932991.1	1.1e-26	71.13	UPF0481 protein At3g47200-like [Cucurbita moschata]	[more]
XP_023548424.1	5.0e-24	65.98	UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]	[more]
XP_022962577.1	1.9e-15	59.14	putative UPF0481 protein At3g02645 [Cucurbita moschata]	[more]

BLAST of CmaCh19G003570 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 5..95 e-value: 2.9E-10 score: 40.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G003570.1	CmaCh19G003570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane