CmaCh19G003560 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G003560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	UPF0481 protein At3g47200-like
Location	Cma_Chr19: 3848414 .. 3852735 (-)
RNA-Seq Expression	CmaCh19G003560
Synteny	CmaCh19G003560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAAAATATGATAGCGTTTGAGCATTTTTATGTTGGAAATGACAACAAGTATATCCAATATGTGTCATTACTAGATCATTTGATATGTACAGAGAAAGATGTGAGTGTACTTGTGAAAGCCGGAATCATAATAAACGAAATTGGAGGTAGTAGTATAGAAGTTTCAGAACTGTTGAATAATCTCGGTAAATTTGTTACAGTCCCAAATTGTTGCCACTTCAACGATATCAACAAAGCTTTACGAGAACAATGCAGTAGACGATGGAACAAGGCGATAGCTACACTCAAACATAACTATTTCAATACTCCTTGGGCTATTGTCTCCTTCGTTGGTGCAATCTTCCTCCTTATTTTTGCCCTGCTTCAAACTATATTTTCTAGTATATCAGCATTTCTTAAGAAGTGAAATCTATCCAAATAATATAGGTATGTTTCTTTTAAATTTTCCTCGTTCAATCTTTACCTTGTTAAATGTTAACTTTGTAGTTGCCAATCTTTTTAAATAAATATTATGTTACATTTGTGTTTGTTATCCTACCTATAGTTATTTAATGGACCATAATCTTATGCTAAAAGTTCAATTACTACGTTTTTCATATTATCTCTATTCTTTGTTTGTTATAAAGAAGCGTTTAAGATTGACACGGGTACATGAAAATTTGTGTTTGTGAGGGAAGGGTGCATAATGGTCAAGTTTTGAAGTTTTTGTTTACTCTTCGCTATATTTTTTTCTATATTTGTTTTATACTAAACAATTAAAACTATTTAGATATCAATTCATCTCCGTTTCAGGACCTTTGCTTTTCACGCACATGATGGTCTCATTTTGAAATTTAAGTAATGAAGTTTTGTTCCGTTAAAACTATATTAGTTGGATGTTTTCGAAACTTGGATATGTTCTAGAAGACACACCTAAAAACATCCAATCATGAAGGTTGACTAACCTCTTATTATAAAAGATATTTTTTACCAAAATTTTAAAAAAATTGATTTTAAATTCACGGCAATGCTTCATATTTCATATTTAAAGTTAGTTTAAGCTTCCTCTATAAATAATGAAGTAAGAGCAGTCATTTGGAGCAATATCAAGCAGTGTCAAGCCTTCAACCGTGAGAAATCAACATTTAGATTTTGGGTATCTCTTCCTTGAATTTCTTCTAAATTTGAGAGTTGTAATCCACCATTTCCCTTCAAACTTTTTTCTACCCCTTCTAAAAAGTATTGTCCACAAATCCTCGAAAGAAATCAAGAATTTGAAAATGTTCCTAACTTATATGTCCAATTTTATCTGTCATTGTATATGTTTAAAAGCTTAGAATCGCATTCTCACATTACACATGAATTCATCATGTCTAACCTATCACATTCATACCATCAACAAGCATTTTCATCAAGAATCATGTCCAATGAAAGAAAAATATATTCGGGTAAGATTTGAGGTTAAGTTCAAATTTCCTACCTAGGATCCTCTAAACAAAAATTAAGCATTTCATTAAAGACCTAGTAAGGACTAGAGGGAGCTGCTAATGAGTTTCTGCATTTTGGTTGACTTCCAATCAAGCCTTTGACTCAAACATCGCCACGATCACACAAATTTGTTCTTCCGAGATTACATAAGCATGAGGTAAGTATAAGGAAGAAGTTTCGTGAAGAAGTCATGTCTTGAAAAGGTCTTAATTAGCCTGACAAATAACACCAACTATATGTGAAGAGGGAAAAAATGCGTGTTTGCACAACAGCGAATCAACTTCCTTGGACACGTAATAGAAGCAAGCAAGGTAGGTATGGAAGAGGAGAAAGTCAAAGCCATGAAGGAGTGGAAGACCCCTCCTCAGTGATAGAAGTGCGCTATTTCCTTGGTTGGCAAATTACTATCGGTGATTTGTGGAAGGATTCTCAAAGTGCGCAGACTCCTTGACCGAACTACAAAAGAAGGAAAACAAGTGGAGCTAGACTTCACAGTGTCAAGAAGCCTTTGGCAACCTTAAGAATGCCATGATGGAAGGGCCAGTTTTAGGGATTGCCGATGTGACGAAACCTTTCGAAGTCGAGATGGTGCTTCAGACTTCGCCCTAGGGGCATCCTATTGCAAGAAGGACACCCCATTGCATACGAGAGCCAGAAGCTAAACGATGCAAAAAGAAGGTACGCAGCATCCAAGAAAGAAATGTTGGCAGTGGTCCACTGTTTACGATCTTGGAGATAGTACTTCTTCGGAGCCAAAATTGTAGTGAAGACACACAACAGCTCCATATCTCACTTCTTTAAAAAATCCAAGTTATCGTCGAAGCAAGCGCGTTGGCAAGAATGCATTGCCGAATTTGACTTCCAGTTCAAACACAGGCCATGTAAAGCAAACCAAGGTGCATATGCTCTAAGTTGAAAGAGTGAGTATGCGGCCCTGTGCATGTTAGCTCATCTACAAGCAAGTAAGTTGAGTGGAACGATACAGGAAAGTATCAAGGAACACCTAGCCCGGTCGCTCAGGCCATCATGCAGTTAGCAAGAGAGGGGAAGACTCGCCAGTTTTGGGTCGAAAACAATTTACTCTTCACCAAAGGAAATCGTCTCTTTGCCCCTGTTCGGGGAACTTGAGGAGACTCCTACTAAATGAATGCCACAACACACCATGGGCGGGTCACAACGGGTGGTAGAGAACCTATGCCCTCCTAAAAAGGGGTACTATTGGCCGAACCTCTACGACGATGCGATACAGTTCACAAAGACCTGTCTTATCTGCCAACAAGATGAGGTTGAACGAAACATGATTGCGGGACTACTAGAACCTCTACCAGTCTCGTCCCGACCATGGAAAAGTGTTTCTCTAGACTACATCACACACCTCCCCAAGGTAAGAGAAATGGAGTCTATCTTGGTCATCATTGACAAATTCTCCAAATATGCCATATTTATCCCGACCCGCAAGTCATGCTCGGCCGAAACGACCATACAATTAGTTTTTCGACACGTAGTCAAGTTGTGGGGCATTCCCACTAGGATTGTTAGCGATCGCGATCCGAGATTCACAGGGTCCTTTTGGACTGAATTGTTCAAGCTATTGGGGTCGAGCCATCTCTTCGAGTAATCACCCCAAAATTGATGGACAAATAGAAAGGTTTAACAGTATGCTTGATCGAGTCTTGGCTATGTTTCAAAGAAAATGTTTTAGAAATGGTAAGGAAGGAAATGTATTTTTTTTTTTTTTTTTTTTAAGAAAGCAATAGTAGAGGCTATAAGAAAATAAGCAACAACCACAACTTTGATAGCATATAACCTGAATAGGAAGAATTGATGACTAGTCACATACCTTATAGTACATTTTAGCCCTGACGGGTGTAGACACAATTTTGTTGATAGGTTATACACCCCCGTACTAACACAACAATAATAGTGAATGCTTATCTAACTTGAAAGTAAGTAAAGAGGTTTGGAACGGGCATGCGGCTGTGGACAACACGTCATGAAAAGCATAATTGGACATCTTATATGCGACCGTAGGCAACACGCCTTGGACAAGCATGACCGTGACAACCTACAACTTGACTTAAGCTCACCTCGTCTTGACAAGGTATGTAAGTTGTAAAGTTAGTAGACATGATCTCACTCCTTATGTGAATTATATGCATATGTCAGTTACTGTCTTTTAAACTAATTAGGATACAATTGGTTACAATACCTAATAACTTGGAGTCTATGGCATGATGATAGTTTATGGACCTTAAAACCTGAAGTGGTACTATACGAGAAGATAGAGCAGGTAGAGCCTTGACTGAGACCTACCCTGCTCAAATTCCTTATAAGGAAAGGCATGCTAAGAACAAGCGTTGGAATAAGTAGATACCATGATGCTACCATCTATGATCTAGGTCAATCAGATAAACTAGGGTAACATAAACAGTGGAGAAAATGTCAGAATATCTTAGTGGTCGAGAGTGTTAAGATTATGCCCTAAAGCCTCGTAATTAATTGTTTAATTTTAATAATAACTTTGATTATTTTATTTAAAATTTAATATTATCCCATATGTGATTCACATACAAGAGGATCATGTTTAAGAATAACCTAAAGGGTCTATAGTATATGAATAAGGTTTGCCGATGCTAAGCAACTAGAAGGTTCAACCACACCACAGGTAATTCCTTCAGCATTTTTACATAAAGCTTTAGCGATGTGATTCTCGTAAGTTAGCTTTATGTCAAGCTTAATCCAGTGCAATGATTTGTTGGGCTACAATCAAAACTGATTGCTATTTCAGTGGCCGAAGTTTCCTTGATGTCTTCGTATGTTACTTCGCTAACTTTAACTTCCGAATCCTAA

mRNA sequence

ATGATGCAAAATATGATAGCGTTTGAGCATTTTTATGTTGGAAATGACAACAAGTATATCCAATATGTGTCATTACTAGATCATTTGATATGTACAGAGAAAGATGTGAGTGTACTTGTGAAAGCCGGAATCATAATAAACGAAATTGGAGGTAGTAGTATAGAAGTTTCAGAACTGTTGAATAATCTCGGTAAATTTGTTACAGTCCCAAATTGTTGCCACTTCAACGATATCAACAAAGCTTTACGAGAACAATGCAGTAGACGATGGAACAAGGCGATAGCTACACTCAAACATAACTATTTCAATACTCCTTGGGCTATTGTCTCCTTCGTTGGTGCAATCTTCCTCCTTATTTTTGCCCTGCTTCAAACTATATTTTCTATGGCCGAAGTTTCCTTGATGTCTTCGTATGTTACTTCGCTAACTTTAACTTCCGAATCCTAA

Coding sequence (CDS)

ATGATGCAAAATATGATAGCGTTTGAGCATTTTTATGTTGGAAATGACAACAAGTATATCCAATATGTGTCATTACTAGATCATTTGATATGTACAGAGAAAGATGTGAGTGTACTTGTGAAAGCCGGAATCATAATAAACGAAATTGGAGGTAGTAGTATAGAAGTTTCAGAACTGTTGAATAATCTCGGTAAATTTGTTACAGTCCCAAATTGTTGCCACTTCAACGATATCAACAAAGCTTTACGAGAACAATGCAGTAGACGATGGAACAAGGCGATAGCTACACTCAAACATAACTATTTCAATACTCCTTGGGCTATTGTCTCCTTCGTTGGTGCAATCTTCCTCCTTATTTTTGCCCTGCTTCAAACTATATTTTCTATGGCCGAAGTTTCCTTGATGTCTTCGTATGTTACTTCGCTAACTTTAACTTCCGAATCCTAA

Protein sequence

MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELLNNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIFALLQTIFSMAEVSLMSSYVTSLTLTSES

Homology

[Close]

BLAST of CmaCh19G003560 vs. ExPASy TrEMBL
Match: A0A6J1IHF5 (UPF0481 protein At3g47200-like OS=Cucurbita maxima OX=3661 GN=LOC111473012 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.6e-61
Identity = 121/128 (94.53%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           MM+N+IAFEHFYVGNDNK IQYVSLLDHLICTEKDVSVLVKAGI+INEIGGSSIEVSEL 
Sbjct: 212 MMRNLIAFEHFYVGNDNKCIQYVSLLDHLICTEKDVSVLVKAGIVINEIGGSSIEVSELF 271

Query: 61  NNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 120
           NNL KFVTVPNCCHFNDINKALRE CSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF
Sbjct: 272 NNLCKFVTVPNCCHFNDINKALREHCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 331

Query: 121 ALLQTIFS 129
           ALLQTIFS
Sbjct: 332 ALLQTIFS 339

[Close]

BLAST of CmaCh19G003560 vs. ExPASy TrEMBL
Match: A0A6J1IDP8 (UPF0481 protein At3g47200-like OS=Cucurbita maxima OX=3661 GN=LOC111472222 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59
Identity = 120/128 (93.75%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           MMQN+IAFEH YVGNDNK IQYVSLLDHLICTEKDVSVLVKA IIINEIGGSSIEVS+L 
Sbjct: 226 MMQNLIAFEHVYVGNDNKCIQYVSLLDHLICTEKDVSVLVKARIIINEIGGSSIEVSKLF 285

Query: 61  NNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 120
           NNL KFVTVPNCCHFNDINKALRE CSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF
Sbjct: 286 NNLCKFVTVPNCCHFNDINKALREHCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 345

Query: 121 ALLQTIFS 129
           ALLQTIFS
Sbjct: 346 ALLQTIFS 353

[Close]

BLAST of CmaCh19G003560 vs. ExPASy TrEMBL
Match: A0A6J1EY59 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111439558 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.5e-59
Identity = 116/127 (91.34%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           MM+N+IAFEHFYVGNDNK IQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 
Sbjct: 299 MMRNLIAFEHFYVGNDNKCIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELF 358

Query: 61  NNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 120
           NNL KFVT+PNCCHFNDINKAL+E CSRRWNKAIATLKHNYFNTPW +VSFVGAIFLLIF
Sbjct: 359 NNLCKFVTIPNCCHFNDINKALQEHCSRRWNKAIATLKHNYFNTPWTVVSFVGAIFLLIF 418

Query: 121 ALLQTIF 128
           AL QTIF
Sbjct: 419 ALFQTIF 425

[Close]

BLAST of CmaCh19G003560 vs. ExPASy TrEMBL
Match: A0A6J1EXW9 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111439625 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 107/128 (83.59%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           MM+N+IAFEHFYVGNDNK IQYVSLL+HLICTEKDVS+LVKAGII+NEIGGS+IEVSE+ 
Sbjct: 302 MMRNLIAFEHFYVGNDNKCIQYVSLLEHLICTEKDVSLLVKAGIIVNEIGGSNIEVSEMF 361

Query: 61  NNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 120
           NNL KFVTVPNC HFN INK+LRE C+RRWNKAIATLKHNYFNTPWAIVSF+G IFLL+ 
Sbjct: 362 NNLCKFVTVPNCRHFNHINKSLREHCNRRWNKAIATLKHNYFNTPWAIVSFLGVIFLLVL 421

Query: 121 ALLQTIFS 129
            +LQTIFS
Sbjct: 422 TILQTIFS 429

[Close]

BLAST of CmaCh19G003560 vs. ExPASy TrEMBL
Match: A0A6J1HBC7 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111462532 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.4e-35
Identity = 80/128 (62.50%), Postives = 103/128 (80.47%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           +M+N+IAFEHF +GN +K IQY++ +D LI TEKDVS+LV+A IIIN+IGGS+ EVS+L 
Sbjct: 317 IMRNLIAFEHFPLGNKSKCIQYIAFMDDLISTEKDVSLLVQAEIIINDIGGSNKEVSKLF 376

Query: 61  NNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 120
           NNL KFV       FN+I+KALR+ C++RWNKA A+LKHNYFNTPWA +SF+ A  L+I 
Sbjct: 377 NNLCKFVEERCDDKFNEISKALRDHCNKRWNKAKASLKHNYFNTPWAAISFIAANLLIIL 436

Query: 121 ALLQTIFS 129
            LLQT+FS
Sbjct: 437 TLLQTMFS 444

[Close]

BLAST of CmaCh19G003560 vs. NCBI nr
Match: XP_022974374.1 (UPF0481 protein At3g47200-like [Cucurbita maxima])

HSP 1 Score: 244.6 bits (623), Expect = 5.4e-61
Identity = 121/128 (94.53%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           MM+N+IAFEHFYVGNDNK IQYVSLLDHLICTEKDVSVLVKAGI+INEIGGSSIEVSEL 
Sbjct: 212 MMRNLIAFEHFYVGNDNKCIQYVSLLDHLICTEKDVSVLVKAGIVINEIGGSSIEVSELF 271

Query: 61  NNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 120
           NNL KFVTVPNCCHFNDINKALRE CSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF
Sbjct: 272 NNLCKFVTVPNCCHFNDINKALREHCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 331

Query: 121 ALLQTIFS 129
           ALLQTIFS
Sbjct: 332 ALLQTIFS 339

[Close]

BLAST of CmaCh19G003560 vs. NCBI nr
Match: XP_022973628.1 (UPF0481 protein At3g47200-like [Cucurbita maxima])

HSP 1 Score: 239.2 bits (609), Expect = 2.3e-59
Identity = 120/128 (93.75%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           MMQN+IAFEH YVGNDNK IQYVSLLDHLICTEKDVSVLVKA IIINEIGGSSIEVS+L 
Sbjct: 226 MMQNLIAFEHVYVGNDNKCIQYVSLLDHLICTEKDVSVLVKARIIINEIGGSSIEVSKLF 285

Query: 61  NNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 120
           NNL KFVTVPNCCHFNDINKALRE CSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF
Sbjct: 286 NNLCKFVTVPNCCHFNDINKALREHCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 345

Query: 121 ALLQTIFS 129
           ALLQTIFS
Sbjct: 346 ALLQTIFS 353

[Close]

BLAST of CmaCh19G003560 vs. NCBI nr
Match: XP_022932942.1 (UPF0481 protein At3g47200-like [Cucurbita moschata])

HSP 1 Score: 238.0 bits (606), Expect = 5.1e-59
Identity = 116/127 (91.34%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           MM+N+IAFEHFYVGNDNK IQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSEL 
Sbjct: 299 MMRNLIAFEHFYVGNDNKCIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELF 358

Query: 61  NNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 120
           NNL KFVT+PNCCHFNDINKAL+E CSRRWNKAIATLKHNYFNTPW +VSFVGAIFLLIF
Sbjct: 359 NNLCKFVTIPNCCHFNDINKALQEHCSRRWNKAIATLKHNYFNTPWTVVSFVGAIFLLIF 418

Query: 121 ALLQTIF 128
           AL QTIF
Sbjct: 419 ALFQTIF 425

[Close]

BLAST of CmaCh19G003560 vs. NCBI nr
Match: XP_023548954.1 (UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57
Identity = 116/132 (87.88%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           MM+N+IAFEHFYVGNDNK IQYVSLLDHLICTEKDVSVLV+AGIIINEIGGSSIEVSEL 
Sbjct: 299 MMRNLIAFEHFYVGNDNKCIQYVSLLDHLICTEKDVSVLVQAGIIINEIGGSSIEVSELF 358

Query: 61  NNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 120
           NNL KFVTVPNCCHFNDINKALRE CSRRWNKA ATLKHNYFNTPWA+VS VGAI LLI 
Sbjct: 359 NNLCKFVTVPNCCHFNDINKALREHCSRRWNKAKATLKHNYFNTPWAVVSLVGAILLLIL 418

Query: 121 ALLQTIFSMAEV 133
           A+LQTIFS  +V
Sbjct: 419 AILQTIFSGIQV 430

[Close]

BLAST of CmaCh19G003560 vs. NCBI nr
Match: XP_023548424.1 (UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 107/128 (83.59%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           MM+N+IAFEHFYVGNDNK IQY+SLL+HLICTEKDVS+LVKAGII+N+IGGS+IEVSEL 
Sbjct: 302 MMRNLIAFEHFYVGNDNKCIQYMSLLEHLICTEKDVSLLVKAGIIVNKIGGSNIEVSELF 361

Query: 61  NNLGKFVTVPNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIF 120
           NNLGKFVTVPNCCHFN INK LRE C+RRWNKAIATLKHNYFNTPW IVSF+GAI LL+ 
Sbjct: 362 NNLGKFVTVPNCCHFNHINKPLREHCNRRWNKAIATLKHNYFNTPWTIVSFLGAILLLVL 421

Query: 121 ALLQTIFS 129
            +LQTIFS
Sbjct: 422 TILQTIFS 429

[Close]

BLAST of CmaCh19G003560 vs. TAIR 10
Match: AT3G50160.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-19
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 4   NMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELLNNL 63
           N+IAFE  ++ +  K   Y+  +D+LI + +DVS L   GII N +G  S EVS+L N L
Sbjct: 368 NLIAFEQCHIKSSKKITSYIIFMDNLINSSEDVSYLHHYGIIENWLGSDS-EVSDLFNGL 427

Query: 64  GKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIFAL 123
           GK V   PN  + + +   +     R+WN   ATL+H YFN PWA  SF+ A+ LLIF  
Sbjct: 428 GKEVIFDPNDGYLSALTGEVNIYYRRKWNYLKATLRHKYFNNPWAYFSFIAAVTLLIFTF 487

Query: 124 LQTIFSM 130
            Q+ F++
Sbjct: 488 CQSFFAV 493

[Close]

BLAST of CmaCh19G003560 vs. TAIR 10
Match: AT3G50170.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-16
Identity = 47/130 (36.15%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           +  N+IAFE  ++ + N    Y+  +D+LI + +DVS L   GII + +G  S EV++L 
Sbjct: 403 LFSNLIAFEQCHIESSNHITSYIIFMDNLINSSEDVSYLHYCGIIEHWLGSDS-EVADLF 462

Query: 61  NNLGKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLI 120
           N L + V   P   H + ++  +    +R+WN   ATL H YFN PWA  SF  A+ LL+
Sbjct: 463 NRLCQEVVFDPKDSHLSRLSGDVNRYYNRKWNVLKATLTHKYFNNPWAYFSFSAAVILLL 522

Query: 121 FALLQTIFSM 130
             L Q+ +++
Sbjct: 523 LTLCQSFYAV 531

[Close]

BLAST of CmaCh19G003560 vs. TAIR 10
Match: AT3G50150.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 81.3 bits (199), Expect = 7.4e-16
Identity = 47/130 (36.15%), Postives = 72/130 (55.38%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           +  N+IAFE  +  + N    Y+  +D+LI + +DVS L   GII + +G  S EV++L 
Sbjct: 373 LFSNLIAFEQCHTQSSNNITSYIIFMDNLINSSQDVSYLHHDGIIEHWLGSDS-EVADLF 432

Query: 61  NNLGKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLI 120
           N L K V   P   + + +++ +    SR+WN   ATL+  YFN PWA  SF  A+ LL 
Sbjct: 433 NRLCKEVIFDPKDGYLSQLSREVNRYYSRKWNSLKATLRQKYFNNPWAYFSFSAAVILLF 492

Query: 121 FALLQTIFSM 130
               Q+ F++
Sbjct: 493 LTFFQSFFAV 501

[Close]

BLAST of CmaCh19G003560 vs. TAIR 10
Match: AT3G50130.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 80.9 bits (198), Expect = 9.6e-16
Identity = 46/129 (35.66%), Postives = 72/129 (55.81%), Query Frame = 0


Query: 1   MMQNMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELL 60
           +  N+IAFE  ++ + N    Y+  +D+LI + +DV  L   GII + + G+  EV++L 
Sbjct: 428 LFSNLIAFEQCHIDSSNDITSYIIFMDNLIDSSEDVRYLHYCGIIEHWL-GNDYEVADLF 487

Query: 61  NNLGKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLI 120
           N L + V   P   + + ++  +    SR+WN   A LKH YFN PWA  SF  A+ LL+
Sbjct: 488 NRLCQEVAFDPQNSYLSQLSNKVDRNYSRKWNVLKAILKHKYFNNPWAYFSFFAALVLLV 547

Query: 121 FALLQTIFS 129
             L Q+ F+
Sbjct: 548 LTLFQSFFT 555

[Close]

BLAST of CmaCh19G003560 vs. TAIR 10
Match: AT3G50120.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-15
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 4   NMIAFEHFYVGNDNKYIQYVSLLDHLICTEKDVSVLVKAGIIINEIGGSSIEVSELLNNL 63
           N+IAFE  ++ + N    Y+  +D+LI + +DVS L   GII + +G  S EV++L N L
Sbjct: 398 NLIAFEQCHIDSSNDITSYIIFMDNLIDSHEDVSYLHYCGIIEHWLGSDS-EVADLFNRL 457

Query: 64  GKFVTV-PNCCHFNDINKALREQCSRRWNKAIATLKHNYFNTPWAIVSFVGAIFLLIFAL 123
            + V       + + ++  +      +WN   ATLKH YFN PWAIVSF  A+ LL+   
Sbjct: 458 CQEVVFDTEDSYLSRLSIEVNRYYDHKWNAWRATLKHKYFNNPWAIVSFCAAVILLVLTF 517

Query: 124 LQTIFSM 130
            Q+ +++
Sbjct: 518 SQSFYAV 523

The following BLAST results are available for this feature:

BLAST of CmaCh19G003560 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G003560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHF5	2.6e-61	94.53	UPF0481 protein At3g47200-like OS=Cucurbita maxima OX=3661 GN=LOC111473012 PE=4 ...	[more]
A0A6J1IDP8	1.1e-59	93.75	UPF0481 protein At3g47200-like OS=Cucurbita maxima OX=3661 GN=LOC111472222 PE=4 ...	[more]
A0A6J1EY59	2.5e-59	91.34	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111439558 PE=...	[more]
A0A6J1EXW9	1.1e-54	83.59	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111439625 PE=...	[more]
A0A6J1HBC7	1.4e-35	62.50	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111462532 PE=...	[more]

BLAST of CmaCh19G003560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974374.1	5.4e-61	94.53	UPF0481 protein At3g47200-like [Cucurbita maxima]	[more]
XP_022973628.1	2.3e-59	93.75	UPF0481 protein At3g47200-like [Cucurbita maxima]	[more]
XP_022932942.1	5.1e-59	91.34	UPF0481 protein At3g47200-like [Cucurbita moschata]	[more]
XP_023548954.1	1.6e-57	87.88	UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]	[more]
XP_023548424.1	2.6e-55	83.59	UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh19G003560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50160.1	5.5e-19	41.73	Plant protein of unknown function (DUF247)	[more]
AT3G50170.1	3.3e-16	36.15	Plant protein of unknown function (DUF247)	[more]
AT3G50150.1	7.4e-16	36.15	Plant protein of unknown function (DUF247)	[more]
AT3G50130.1	9.6e-16	35.66	Plant protein of unknown function (DUF247)	[more]
AT3G50120.1	2.8e-15	36.22	Plant protein of unknown function (DUF247)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 1..119 e-value: 4.8E-31 score: 108.4
None	No IPR available	PANTHER	PTHR31170:SF13	BNAC04G53230D PROTEIN	coord: 2..131
None	No IPR available	PANTHER	PTHR31170	BNAC04G53230D PROTEIN	coord: 2..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G003560.1	CmaCh19G003560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane