CmaCh19G003530 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G003530
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	polygalacturonase-like
Location	Cma_Chr19: 3742532 .. 3743330 (+)
RNA-Seq Expression	CmaCh19G003530
Synteny	CmaCh19G003530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACCAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAAGTATATTTCCTCATTAATCTCATACATTGTTAATTTTTTTCTAATTATATTTAAACTTAAATTTGATGAATACAATTTAAATTTTAAATTTTATAAATAATTGATTTATTTTATCTTTAATGGTTTGAAATTTGTTTGTGTTTAAGATGGGTGTTAAATTATTAGTATTATTTTTTGGTACATTAAATTACTTTTATAGGTAATAATTTAGGGATGCTATTACTTTTGATGTCTTAAAGTGGTATGAAGCTTTTATGATTTTATTTTTTAATTTATCCAAAATATCTAATATCATTGGAGATAATTGCTCTAACTTATAATATACTATCTAGAAAATCTAAGACTATGCTTGATTTATATCTTATTATTTAATTCCTAATTTATATTTGGTTTTAGAATATAGTTTCATTGTTCTTCTTTATTTTAATAGGATTCTGAAGTTAAAGTTAGCGAAGTAACATACAAAGACATCAAGGGAACTTCAGCCACTGAAATAGCTATTGATTGTAGTCCAACAAATCATTGCACTAGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCACTAAAGCTTCA

mRNA sequence

ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACCAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAAGATTCTGAAGTTAAAGTTAGCGAAGTAACATACAAAGACATCAAGGGAACTTCAGCCACTGAAATAGCTATTGATTGTAGTCCAACAAATCATTGCACTAGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCACTAAAGCTTCA

Coding sequence (CDS)

ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGTAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATTCGCTACCAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGGTCAAGATTCTGAAGTTAAAGTTAGCGAAGTAACATACAAAGACATCAAGGGAACTTCAGCCACTGAAATAGCTATTGATTGTAGTCCAACAAATCATTGCACTAGATTAAGCTTGATAGACATAAAGCTAACTTACGAGAATCACATCACTAAAGCTTCA

Protein sequence

MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAIDCSPTNHCTRLSLIDIKLTYENHITKAS

Homology

[Close]

BLAST of CmaCh19G003530 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.3e-38
Identity = 76/124 (61.29%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E EE GV NVTVK+ TF+ T+NG+RIKSWGRPS GFA N+ FQH  M NV+NPI+IDQ+Y
Sbjct: 252 EQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHY 311

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHI 121
           CP  K CPGQ S V++S+VTY+DI GTSATE+A+  DCSP + C  + L D+KLTY+N  
Sbjct: 312 CPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQA 371

Query: 122 TKAS 124
            ++S
Sbjct: 372 AESS 375

[Close]

BLAST of CmaCh19G003530 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-28
Identity = 68/122 (55.74%), Postives = 82/122 (67.21%), Query Frame = 0


Query: 4   EEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCP 63
           EE GV NVTV +  F  T NGVRIK+WG+ SN FA N+ FQHI M  VKNPIIIDQ+YC 
Sbjct: 260 EEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCL 319

Query: 64  HLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHITK 123
           H K CP Q+S VKVS V Y+DI GTS TE+A+  DCS    CT + + D+ L   +   +
Sbjct: 320 H-KPCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQ 379

[Close]

BLAST of CmaCh19G003530 vs. ExPASy Swiss-Prot
Match: P49063 (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 5.2e-20
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 5   EDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPH 64
           E  V  VTV+      T NGVRIK+W     G A+N+ F+ I MDNV  P++IDQ YCP+
Sbjct: 297 EQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQEYCPY 356

Query: 65  LKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTRLSLIDIKLTY 116
                G  S+VK+S+VT K IKGTSAT++A+   CS    CT ++L DI L +
Sbjct: 357 GHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVH 409

[Close]

BLAST of CmaCh19G003530 vs. ExPASy Swiss-Prot
Match: Q9SFB7 (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 5.2e-20
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 8   VHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKD 67
           V NV V  +T   T NGVRIK+W +  +G A N+ FQ IIM NV NPIII+Q+YC  ++ 
Sbjct: 304 VSNVVVNKATLIGTTNGVRIKTW-QGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEA 363

Query: 68  CPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTRLSLIDIKLT--YENHITKAS 124
           CP Q S V+VS V YK+I+GTS+  IA+   CS    C  +S+ ++KL    +  ++KAS
Sbjct: 364 CPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLVDQTQQDVSKAS 422

[Close]

BLAST of CmaCh19G003530 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 5   EDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPH 64
           E+ V  + VK+ T T ++NGVRIK+W +   G A+ +HFQ I M++V  PI+IDQ YCP+
Sbjct: 215 EESVVGIYVKNCTITGSQNGVRIKTWPKSEPGEASEMHFQDITMNSVGTPILIDQGYCPY 274

Query: 65  LKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTRLSLIDIKLTY 116
            +      S VK+S++++K+IKGTS T+ A+   CS +  C  + L DI LTY
Sbjct: 275 NQCTAEVPSSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTY 327

[Close]

BLAST of CmaCh19G003530 vs. ExPASy TrEMBL
Match: A0A6J1IEV2 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473552 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           M+AEEDGVHN+TVKSSTFTRTRNG RIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN
Sbjct: 259 MKAEEDGVHNITVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 318

Query: 61  YCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENH 120
           YCPHLKDCPGQDS VKVSEVTY+DIKGTSAT+IAI  DCSPTNHCT L LIDIKLTYENH
Sbjct: 319 YCPHLKDCPGQDSGVKVSEVTYEDIKGTSATKIAINFDCSPTNHCTGLRLIDIKLTYENH 378

Query: 121 ITKAS 124
           I KAS
Sbjct: 379 IAKAS 383

[Close]

BLAST of CmaCh19G003530 vs. ExPASy TrEMBL
Match: A0A6J1HFX3 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111463942 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.5e-57
Identity = 113/125 (90.40%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           +EAEEDGVHNVTVKSSTFT T+NGVRIKSWGRPSNGFATNVHFQHI MDNVKNPIIIDQN
Sbjct: 259 IEAEEDGVHNVTVKSSTFTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQN 318

Query: 61  YCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENH 120
           YCPHLKDCPGQDS VKVSEVTY+DIKGTSATEIAI  DCSPTNHCT L+LIDI LTYENH
Sbjct: 319 YCPHLKDCPGQDSGVKVSEVTYEDIKGTSATEIAIKFDCSPTNHCTGLNLIDINLTYENH 378

Query: 121 ITKAS 124
           I KAS
Sbjct: 379 IAKAS 383

[Close]

BLAST of CmaCh19G003530 vs. ExPASy TrEMBL
Match: A0A6J1F3B8 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111439594 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.6e-54
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           MEAEE+GVHNVTVKSSTFT T+NGVRIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQN
Sbjct: 262 MEAEENGVHNVTVKSSTFTGTQNGVRIKSWGRPSNGSATKVYFQHIIMDNVKNPIIIDQN 321

Query: 61  YCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENH 120
           YCPHLKDCPGQ S VKVSEVTY+DIKGTSATEIAI  DCSPTNHCT LSL DI LTYENH
Sbjct: 322 YCPHLKDCPGQASGVKVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLKDINLTYENH 381

Query: 121 ITKAS 124
           I KAS
Sbjct: 382 IAKAS 386

[Close]

BLAST of CmaCh19G003530 vs. ExPASy TrEMBL
Match: A0A6J1IDZ8 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111474610 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 104/123 (84.55%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 3   AEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYC 62
           AEEDGVHNVTV SSTFT T+NGVRIKSWGRPSNGFAT VHFQ IIMDNVKNPIIID+NYC
Sbjct: 252 AEEDGVHNVTVISSTFTGTQNGVRIKSWGRPSNGFATKVHFQRIIMDNVKNPIIIDENYC 311

Query: 63  PHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENHIT 122
           PH K+CPGQ S VKVS+VTY+DIKGTSATEIAI  DCSP NHCTRLSL DIKLTYEN I 
Sbjct: 312 PHHKNCPGQASGVKVSDVTYEDIKGTSATEIAINFDCSPINHCTRLSLKDIKLTYENQIA 371

Query: 123 KAS 124
           +AS
Sbjct: 372 QAS 374

[Close]

BLAST of CmaCh19G003530 vs. ExPASy TrEMBL
Match: A0A6J1I843 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111471802 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.0e-50
Identity = 102/125 (81.60%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           ++AEEDGVHNVT+  STFT T+NGVRIKSWGRPS GFAT V+FQHIIMDNVKNPIIIDQN
Sbjct: 262 IKAEEDGVHNVTLTLSTFTGTQNGVRIKSWGRPSRGFATKVYFQHIIMDNVKNPIIIDQN 321

Query: 61  YCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENH 120
           YCPH  DCPGQ S VKVSEVTY+DIKGTSATEIAI  DCSP NHCT LS+ DI LTYENH
Sbjct: 322 YCPHETDCPGQASGVKVSEVTYEDIKGTSATEIAINFDCSPINHCTGLSMKDINLTYENH 381

Query: 121 ITKAS 124
           I KAS
Sbjct: 382 IAKAS 386

[Close]

BLAST of CmaCh19G003530 vs. NCBI nr
Match: XP_022974795.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 2.1e-58
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           M+AEEDGVHN+TVKSSTFTRTRNG RIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN
Sbjct: 259 MKAEEDGVHNITVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 318

Query: 61  YCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENH 120
           YCPHLKDCPGQDS VKVSEVTY+DIKGTSAT+IAI  DCSPTNHCT L LIDIKLTYENH
Sbjct: 319 YCPHLKDCPGQDSGVKVSEVTYEDIKGTSATKIAINFDCSPTNHCTGLRLIDIKLTYENH 378

Query: 121 ITKAS 124
           I KAS
Sbjct: 379 IAKAS 383

[Close]

BLAST of CmaCh19G003530 vs. NCBI nr
Match: XP_022963687.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 231.9 bits (590), Expect = 3.0e-57
Identity = 113/125 (90.40%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           +EAEEDGVHNVTVKSSTFT T+NGVRIKSWGRPSNGFATNVHFQHI MDNVKNPIIIDQN
Sbjct: 259 IEAEEDGVHNVTVKSSTFTGTQNGVRIKSWGRPSNGFATNVHFQHITMDNVKNPIIIDQN 318

Query: 61  YCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENH 120
           YCPHLKDCPGQDS VKVSEVTY+DIKGTSATEIAI  DCSPTNHCT L+LIDI LTYENH
Sbjct: 319 YCPHLKDCPGQDSGVKVSEVTYEDIKGTSATEIAIKFDCSPTNHCTGLNLIDINLTYENH 378

Query: 121 ITKAS 124
           I KAS
Sbjct: 379 IAKAS 383

[Close]

BLAST of CmaCh19G003530 vs. NCBI nr
Match: XP_022932973.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 221.1 bits (562), Expect = 5.3e-54
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           MEAEE+GVHNVTVKSSTFT T+NGVRIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQN
Sbjct: 262 MEAEENGVHNVTVKSSTFTGTQNGVRIKSWGRPSNGSATKVYFQHIIMDNVKNPIIIDQN 321

Query: 61  YCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENH 120
           YCPHLKDCPGQ S VKVSEVTY+DIKGTSATEIAI  DCSPTNHCT LSL DI LTYENH
Sbjct: 322 YCPHLKDCPGQASGVKVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLKDINLTYENH 381

Query: 121 ITKAS 124
           I KAS
Sbjct: 382 IAKAS 386

[Close]

BLAST of CmaCh19G003530 vs. NCBI nr
Match: XP_023522679.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.2 bits (557), Expect = 2.0e-53
Identity = 109/125 (87.20%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           ME EEDGVHNVTVKSS FT T+NGVRIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQN
Sbjct: 264 METEEDGVHNVTVKSSIFTGTQNGVRIKSWGRPSNGSATKVYFQHIIMDNVKNPIIIDQN 323

Query: 61  YCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENH 120
           YCPHLKDCPGQ S VKVSEVTY+DIKGTSATEIAI  DCSPTNHCT LSL DI LTYENH
Sbjct: 324 YCPHLKDCPGQASGVKVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLKDINLTYENH 383

Query: 121 ITKAS 124
           I KAS
Sbjct: 384 IAKAS 388

[Close]

BLAST of CmaCh19G003530 vs. NCBI nr
Match: XP_023521278.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 104/125 (83.20%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MEAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQN 60
           +E EEDGVHN+TVKSSTFT T+NGVRIKSWGRPSNGFATNV+FQHIIMDNVKNPIIIDQN
Sbjct: 230 IEVEEDGVHNITVKSSTFTGTQNGVRIKSWGRPSNGFATNVYFQHIIMDNVKNPIIIDQN 289

Query: 61  YCPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYENH 120
           YCP  K+CP     +KVSEVTY+DIKGTSATEIAI  DCSPTNHCT LSLIDI LTYENH
Sbjct: 290 YCPPFKECP-----IKVSEVTYQDIKGTSATEIAINFDCSPTNHCTGLSLIDINLTYENH 349

Query: 121 ITKAS 124
           I KAS
Sbjct: 350 IAKAS 349

[Close]

BLAST of CmaCh19G003530 vs. TAIR 10
Match: AT2G43880.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 3   AEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYC 62
           A E+GV NVTV SS FT+T+NGVRIK+W RPS GF  NV F+++IM+NV+NP+IIDQNYC
Sbjct: 254 ANEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVENPVIIDQNYC 313

Query: 63  PHLKDCPGQDSEVKVSEVTYKDIKGTSATEIA--IDCSPTNHCTRLSLIDIKLTY 116
           P+ K CP Q S VK+S VT+ +IKGTS T IA  +DCS +NHCT L L DIKLTY
Sbjct: 314 PNGKGCPRQSSGVKISGVTFANIKGTSTTPIAMKLDCSGSNHCTGLRLQDIKLTY 368

[Close]

BLAST of CmaCh19G003530 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 151.0 bits (380), Expect = 6.3e-37
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E+ E GV N+TVK++TFT T NGVRIKSW RPSNGFA N+ FQH +M+NV+NPI+IDQNY
Sbjct: 247 ESVEVGVQNITVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNY 306

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYEN 118
           CP  ++CP Q S +K+S+V + DI GTSATE+ +  DCS    CT + + D+KLTY N
Sbjct: 307 CPGNENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDCSSKKPCTGIRIQDVKLTYRN 364

[Close]

BLAST of CmaCh19G003530 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 147.1 bits (370), Expect = 9.1e-36
Identity = 72/118 (61.02%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           ++ E GV NVTVK+ TFT T NGVRIKSW RPS+GFA N+ FQH +M+NV+NPIIIDQNY
Sbjct: 245 DSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVENPIIIDQNY 304

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAI--DCSPTNHCTRLSLIDIKLTYEN 118
           CP   DCP Q S +K+S+V + DI GTSATE+ +  DCS    CT + L D+KLTY+N
Sbjct: 305 CPD-HDCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKLTYQN 361

[Close]

BLAST of CmaCh19G003530 vs. TAIR 10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-35
Identity = 72/116 (62.07%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           +  EDGV NVTV SS FT ++NGVRIKSW RPS GF  NV FQ++IM NV+NPIIIDQNY
Sbjct: 250 QLNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPIIIDQNY 309

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTRLSLIDIKLTY 116
           CP  + CP + S VK+++VTYK+I+GTSAT+ A+   CS +N CT ++L DIKLTY
Sbjct: 310 CPSNQGCPTEHSGVKITQVTYKNIQGTSATQEAMKLVCSKSNPCTGITLQDIKLTY 365

[Close]

BLAST of CmaCh19G003530 vs. TAIR 10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-35
Identity = 72/116 (62.07%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 2   EAEEDGVHNVTVKSSTFTRTRNGVRIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNY 61
           E +EDGV NVTV SS FT ++NGVRIKSW RPSNGF   V FQ ++M NV+NPIIIDQNY
Sbjct: 250 ELKEDGVENVTVSSSVFTGSQNGVRIKSWARPSNGFVRTVFFQDLVMKNVENPIIIDQNY 309

Query: 62  CPHLKDCPGQDSEVKVSEVTYKDIKGTSATEIAID--CSPTNHCTRLSLIDIKLTY 116
           CP  + CP + S VK+S+VTYK+I+GTSAT+ A+   CS ++ CT ++L DIKLTY
Sbjct: 310 CPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTY 365

The following BLAST results are available for this feature:

BLAST of CmaCh19G003530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	4.3e-38	61.29	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	1.8e-28	55.74	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
P49063	5.2e-20	46.90	Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 ...	[more]
Q9SFB7	5.2e-20	46.67	Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2	[more]
P24548	1.5e-19	44.25	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]

BLAST of CmaCh19G003530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEV2	1.0e-58	91.20	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473552 PE=3 SV=1	[more]
A0A6J1HFX3	1.5e-57	90.40	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111463942 PE=3 SV=1	[more]
A0A6J1F3B8	2.6e-54	88.00	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111439594 PE=3 SV=1	[more]
A0A6J1IDZ8	1.0e-50	84.55	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111474610 PE=3 SV=1	[more]
A0A6J1I843	5.0e-50	81.60	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111471802 PE=3 SV=1	[more]

BLAST of CmaCh19G003530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974795.1	2.1e-58	91.20	polygalacturonase-like [Cucurbita maxima]	[more]
XP_022963687.1	3.0e-57	90.40	polygalacturonase-like [Cucurbita moschata]	[more]
XP_022932973.1	5.3e-54	88.00	polygalacturonase-like [Cucurbita moschata]	[more]
XP_023522679.1	2.0e-53	87.20	polygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]
XP_023521278.1	1.2e-50	83.20	polygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh19G003530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43880.1	1.3e-37	65.22	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	6.3e-37	59.32	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	9.1e-36	61.02	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	2.0e-35	62.07	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	2.7e-35	62.07	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..123 e-value: 1.5E-34 score: 121.3
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 5..117 e-value: 8.6E-30 score: 103.9
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 2..118
None	No IPR available	PANTHER	PTHR31375:SF219	PUTATIVE-RELATED	coord: 2..118
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 6..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G003530.1	CmaCh19G003530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098656	anion transmembrane transport
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0015698	inorganic anion transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005741	mitochondrial outer membrane
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0008308	voltage-gated anion channel activity