CmaCh19G003110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G003110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr19: 2639881 .. 2640261 (-)
RNA-Seq Expression	CmaCh19G003110
Synteny	CmaCh19G003110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAAATCAACTTCCTCCTGCAAAAATCGAAGATTCCGGACTTCCGTCTTCTCCGATTCTGAAATCGACGTCGCAATACAGCTTCTTCATCTAAGCGAAGACTCCGATTACCTCGCCAACCCCATCGCCTCCTCTACCAGTTGCAGCGATGACAAATCAGTCGCCTCCGCCACCAGCGCCACCAACGCCGCTGGAATGGAAGACGATGGAAGCCACAGCAGCATCCGCCGCGGAGCCACTCTTGTGCCTACAACCTCTCTGATAGAAGACATCTTCGAGGAAATCGGAGACAGTTCGAATCGGAGGCGGAGGAAGCGGCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTTTTATCTCCGTGAAATAA

mRNA sequence

ATGCCGAAATCAACTTCCTCCTGCAAAAATCGAAGATTCCGGACTTCCGTCTTCTCCGATTCTGAAATCGACGTCGCAATACAGCTTCTTCATCTAAGCGAAGACTCCGATTACCTCGCCAACCCCATCGCCTCCTCTACCAGTTGCAGCGATGACAAATCAGTCGCCTCCGCCACCAGCGCCACCAACGCCGCTGGAATGGAAGACGATGGAAGCCACAGCAGCATCCGCCGCGGAGCCACTCTTGTGCCTACAACCTCTCTGATAGAAGACATCTTCGAGGAAATCGGAGACAGTTCGAATCGGAGGCGGAGGAAGCGGCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTTTTATCTCCGTGAAATAA

Coding sequence (CDS)

ATGCCGAAATCAACTTCCTCCTGCAAAAATCGAAGATTCCGGACTTCCGTCTTCTCCGATTCTGAAATCGACGTCGCAATACAGCTTCTTCATCTAAGCGAAGACTCCGATTACCTCGCCAACCCCATCGCCTCCTCTACCAGTTGCAGCGATGACAAATCAGTCGCCTCCGCCACCAGCGCCACCAACGCCGCTGGAATGGAAGACGATGGAAGCCACAGCAGCATCCGCCGCGGAGCCACTCTTGTGCCTACAACCTCTCTGATAGAAGACATCTTCGAGGAAATCGGAGACAGTTCGAATCGGAGGCGGAGGAAGCGGCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTTTTATCTCCGTGAAATAA

Protein sequence

MPKSTSSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANPIASSTSCSDDKSVASATSATNAAGMEDDGSHSSIRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTKPFISVK

Homology

[Close]

BLAST of CmaCh19G003110 vs. NCBI nr
Match: KAG6571728.1 (hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 225.3 bits (573), Expect = 2.9e-55
Identity = 122/126 (96.83%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MPKSTSSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANPIASSTSCSDDKSVASATS 60
           M KS SSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLAN IASSTSCSDDKSVASATS
Sbjct: 1   MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS 60

Query: 61  ATNAAGMEDDGSHSSIRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120
           ATNAAGMEDDGSHSS RRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK
Sbjct: 61  ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120

Query: 121 PFISVK 127
           PFISVK
Sbjct: 121 PFISVK 126

[Close]

BLAST of CmaCh19G003110 vs. NCBI nr
Match: KAG6588821.1 (hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 7.7e-32
Identity = 88/126 (69.84%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 1   MPKSTSSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANPIASSTSCSDDKSVASATS 60
           M +S S+ +NRRF+TS+FSDSEIDVAIQL+HLSEDSDY     ASSTSCSDDKS+ASA S
Sbjct: 1   MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASA-S 60

Query: 61  ATNAAGMEDDGSHSSIRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120
            +NA  MEDDG ++  RRG    P    IEDI+EEIGD +NRRRRKRRSRSVYEIYKLTK
Sbjct: 61  NSNADEMEDDGRNNG-RRGTKTTP----IEDIYEEIGDGANRRRRKRRSRSVYEIYKLTK 120

Query: 121 PFISVK 127
           P I VK
Sbjct: 121 PVIFVK 120

The following BLAST results are available for this feature:

BLAST of CmaCh19G003110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G003110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G003110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571728.1	2.9e-55	96.83	hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588821.1	7.7e-32	69.84	hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh19G003110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G003110.1	CmaCh19G003110.1	mRNA