CmaCh19G002940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G002940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Reverse transcriptase
Location	Cma_Chr19: 2244902 .. 2245942 (-)
RNA-Seq Expression	CmaCh19G002940
Synteny	CmaCh19G002940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATTATCGACCAAACTCCCCTAGAAGTGGGGATAGTGATAGCTCTGAAGACGAGGAGGAGGAATACGAATCCTCCCAATAGAGAGGTAGGGCTCCTTGGGGGAGATCATAGAAACATATTAGTAAGAGCCAAAGTCACGACTCCCCTTCTTGCTTCATATGTAAGGGGGCTCACAAGTATCAAATGCCCACAGAAGGCAGCATTATGTGCCTTCCAAGCAAAACTTCGAGCTAATTCAAAAGTTGAGTACGAAACAGTAGAAACAGAAGCATCCTTAGATAGGACTATTGGATATCCCCGTGTTGGGTTACTAAAGTACTTGTCCGCTCTTCAAAAGAGAGTAGAAGAGATAGAAAAGCCAGTGGAATGTGGTCTTATGTATGTCGAGATTTGGGTAAATCATAAAGCAGCCAGAAACACTATCATCGACTCTAGAGCTACCCACAACTTCATGTCGAAGACCGAAGCAAAACGTTTGAATATCTTTTGGCATCGAGATGTAGGGAAGATGAAGGCCGTTAATTCAGCAACCTTACCCATATTAGGAGTTGCGAAGAGAACTCCCATCAAACTGAAAACTTGGACGGGACAAACTGACTTTGTGATAGTCAAGATGGATGACTTCGACATCGTGTTAGGGATGAACTTCCTACTAGAACACAAAGTCATCCACATGCCACTAGCAAAAAGTTTTGTAATAACAGGGTCAAACCCGACGATTATCCAGACTAACACTCGCCAGCCAAGAAGGATAAAAAAGATGACAGCACTACAGTTGAGGCAGGATCTAAGTCGTGATGAACTTACACTCGTTGCCATTACCGTATCAGAAGAGGGAAGCTCGAGCGAGCCAACCTCAACAAAAGTCTCCTGGTCAACTAAAAAATATCACGACATGAGACAAGGAAGTCAGACAAAGTATTTATCTCCAGCTAAGAAGATAAATAGCAAAGTTGATGTCATATTAGGGGTAGAATTACTTGGCAAGAACGAATGTCATACTTCTGAACTCGAGCTAGTCGATTTCTACGAGTAG

mRNA sequence

ATGAGAATTATCGACCAAACTCCCCTAGAAGTGGGGATAGTGATAGCTCTGAAGACGAGGAGGAGGAATACGAATCCTCCCAATAGAGAGGTAGGGCTCCTTGGGGGAGATCATAGAAACATATTAGTAAGAGCCAAAGTCACGACTCCCCTTCTTGCTTCATATGTAAGGGGGCTCACAAGTATCAAATGCCCACAGAAGGCAGCATTATGTGCCTTCCAAGCAAAACTTCGAGCTAATTCAAAAGTTGAGTACGAAACAGTAGAAACAGAAGCATCCTTAGATAGGACTATTGGATATCCCCGTGTTGGGTTACTAAAGTACTTGTCCGCTCTTCAAAAGAGAGTAGAAGAGATAGAAAAGCCAGTGGAATGTGGTCTTATGTATGTCGAGATTTGGGTAAATCATAAAGCAGCCAGAAACACTATCATCGACTCTAGAGCTACCCACAACTTCATGTCGAAGACCGAAGCAAAACGTTTGAATATCTTTTGGCATCGAGATGTAGGGAAGATGAAGGCCGTTAATTCAGCAACCTTACCCATATTAGGAGTTGCGAAGAGAACTCCCATCAAACTGAAAACTTGGACGGGACAAACTGACTTTGTGATAGTCAAGATGGATGACTTCGACATCGTGTTAGGGATGAACTTCCTACTAGAACACAAAGTCATCCACATGCCACTAGCAAAAAGTTTTGTAATAACAGGGTCAAACCCGACGATTATCCAGACTAACACTCGCCAGCCAAGAAGGATAAAAAAGATGACAGCACTACAGTTGAGGCAGGATCTAAGTCGTGATGAACTTACACTCGTTGCCATTACCGTATCAGAAGAGGGAAGCTCGAGCGAGCCAACCTCAACAAAAGTCTCCTGGTCAACTAAAAAATATCACGACATGAGACAAGGAAGTCAGACAAAGTATTTATCTCCAGCTAAGAAGATAAATAGCAAAGTTGATGTCATATTAGGGGTAGAATTACTTGGCAAGAACGAATGTCATACTTCTGAACTCGAGCTAGTCGATTTCTACGAGTAG

Coding sequence (CDS)

ATGAGAATTATCGACCAAACTCCCCTAGAAGTGGGGATAGTGATAGCTCTGAAGACGAGGAGGAGGAATACGAATCCTCCCAATAGAGAGGTAGGGCTCCTTGGGGGAGATCATAGAAACATATTAGTAAGAGCCAAAGTCACGACTCCCCTTCTTGCTTCATATGTAAGGGGGCTCACAAGTATCAAATGCCCACAGAAGGCAGCATTATGTGCCTTCCAAGCAAAACTTCGAGCTAATTCAAAAGTTGAGTACGAAACAGTAGAAACAGAAGCATCCTTAGATAGGACTATTGGATATCCCCGTGTTGGGTTACTAAAGTACTTGTCCGCTCTTCAAAAGAGAGTAGAAGAGATAGAAAAGCCAGTGGAATGTGGTCTTATGTATGTCGAGATTTGGGTAAATCATAAAGCAGCCAGAAACACTATCATCGACTCTAGAGCTACCCACAACTTCATGTCGAAGACCGAAGCAAAACGTTTGAATATCTTTTGGCATCGAGATGTAGGGAAGATGAAGGCCGTTAATTCAGCAACCTTACCCATATTAGGAGTTGCGAAGAGAACTCCCATCAAACTGAAAACTTGGACGGGACAAACTGACTTTGTGATAGTCAAGATGGATGACTTCGACATCGTGTTAGGGATGAACTTCCTACTAGAACACAAAGTCATCCACATGCCACTAGCAAAAAGTTTTGTAATAACAGGGTCAAACCCGACGATTATCCAGACTAACACTCGCCAGCCAAGAAGGATAAAAAAGATGACAGCACTACAGTTGAGGCAGGATCTAAGTCGTGATGAACTTACACTCGTTGCCATTACCGTATCAGAAGAGGGAAGCTCGAGCGAGCCAACCTCAACAAAAGTCTCCTGGTCAACTAAAAAATATCACGACATGAGACAAGGAAGTCAGACAAAGTATTTATCTCCAGCTAAGAAGATAAATAGCAAAGTTGATGTCATATTAGGGGTAGAATTACTTGGCAAGAACGAATGTCATACTTCTGAACTCGAGCTAGTCGATTTCTACGAGTAG

Protein sequence

MRIIDQTPLEVGIVIALKTRRRNTNPPNREVGLLGGDHRNILVRAKVTTPLLASYVRGLTSIKCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKPVECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPILGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTIIQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMRQGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVDFYE

Homology

[Close]

BLAST of CmaCh19G002940 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 2.7e-69
Identity = 139/281 (49.47%), Postives = 198/281 (70.46%), Query Frame = 0


Query: 63  KCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKP 122
           +CP +AAL AFQA L  +  +E E  ET+   +     PR+G LK+LSALQK+ EE+++P
Sbjct: 361 ECPNRAALRAFQATLTNDRAIEPEGPETDTPPEDADDNPRMGALKFLSALQKKAEEVKEP 420

Query: 123 VECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPI 182
           +E GLMYVE WVN KAA++T++DS ATHNFM++TEA+RLN+ W +D GKMKAVNSA LPI
Sbjct: 421 LERGLMYVEAWVNQKAAKSTMVDSGATHNFMTETEARRLNLXWDKDPGKMKAVNSAALPI 480

Query: 183 LGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTI 242
           +GVAKR  +KL TW+G  DFVIV+MDDFD+VLG+ FLLEHKVI MPLAK  V+T S+P +
Sbjct: 481 MGVAKRVSVKLGTWSGLVDFVIVRMDDFDVVLGIKFLLEHKVIPMPLAKCLVVTSSDPIV 540

Query: 243 IQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMR 302
           +QT+ +QP  +K ++ALQL++ +++DE T +AI V+E  +S E    ++    + Y D+ 
Sbjct: 541 VQTSIKQPSGVKMISALQLKKGIAQDEPTFMAIPVAEGRNSEELVPREIQRVLEAYADVM 600

Query: 303 QGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVD 344
             +  K L P   I+ +++++ G +   KN    +  EL +
Sbjct: 601 PDNLPKNLPPRPGIDHEIELLPGAKPPAKNAYRMAPPELAE 641

[Close]

BLAST of CmaCh19G002940 vs. ExPASy TrEMBL
Match: A0A5D3DSU8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002800 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 8.8e-68
Identity = 134/281 (47.69%), Postives = 192/281 (68.33%), Query Frame = 0


Query: 63  KCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKP 122
           +CP K A  AFQA L ++S+ +    E EA     +  PR+G LK+LS+LQK+VEE   P
Sbjct: 401 ECPNKTAFNAFQASLASDSENQQNQTEREADQTEEVDNPRMGALKFLSSLQKKVEETNTP 460

Query: 123 VECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPI 182
           VE GLMYV+IW+N K  ++T++DS  THNF+++ EAKRLN+ W +D G+MKAVNSA LPI
Sbjct: 461 VERGLMYVDIWINEKLTKSTMVDSGTTHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPI 520

Query: 183 LGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTI 242
           +G+ KRT I+L  W+G  DFV+VKMDDFD+VLGM FLLEH+VI MPLAK  VITG  P++
Sbjct: 521 IGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSV 580

Query: 243 IQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMR 302
           +QT+ RQP  +K ++A+Q+++ LSRDE T +AI ++   +S E    ++    +KY D+ 
Sbjct: 581 VQTDLRQPDGLKMISAMQVKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVM 640

Query: 303 QGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVD 344
             S  K L P + I+ +++++ G +   KN    +  EL +
Sbjct: 641 PDSLPKSLPPRRMIDHEIELVPGEKPPAKNAYRMAPPELAE 681

[Close]

BLAST of CmaCh19G002940 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.4e-67
Identity = 134/281 (47.69%), Postives = 190/281 (67.62%), Query Frame = 0


Query: 63  KCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKP 122
           +CP K A  AFQA L ++S  +    E EA     +  PR+G LK+LS+LQK+V E   P
Sbjct: 371 ECPNKTAFNAFQASLASDSDNQQNQTEREADQTEEVDNPRMGALKFLSSLQKKVGETNTP 430

Query: 123 VECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPI 182
           VE GLMYV+ W+N K  ++T++DS ATHNF+++ EAKRLN+ W +D G+MKAVNSA LPI
Sbjct: 431 VERGLMYVDTWINEKPTKSTMVDSGATHNFITEAEAKRLNLRWEKDAGRMKAVNSAALPI 490

Query: 183 LGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTI 242
           +G+ KRT I+L  W+G  DFV+VKMDDFD+VLGM FLLEH+VI MPLAK  VITG  P++
Sbjct: 491 IGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSV 550

Query: 243 IQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMR 302
           +QT+ RQP  +K ++A+QL++ LSRDE T +AI ++   +S E    ++    +KY D+ 
Sbjct: 551 VQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVM 610

Query: 303 QGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVD 344
             S  K L P + I+ +++++ G +   KN    +  EL +
Sbjct: 611 PDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAE 651

[Close]

BLAST of CmaCh19G002940 vs. ExPASy TrEMBL
Match: A0A5A7TAG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00780 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 5.7e-67
Identity = 133/281 (47.33%), Postives = 190/281 (67.62%), Query Frame = 0


Query: 63  KCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKP 122
           +CP K A  AFQA L ++S  +    E EA+    +  PR+G LK+LS+LQK+V E   P
Sbjct: 371 ECPNKTAFNAFQASLTSDSDNQQSQTEGEANQTEEVDNPRMGALKFLSSLQKKVGETNTP 430

Query: 123 VECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPI 182
           VE GLMYV+ W+N K  ++T++DS ATHNF+++ EAKRLN+ W +D G+MKAVNSA LPI
Sbjct: 431 VERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPI 490

Query: 183 LGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTI 242
           +G+ KRT I+L  W+G  DFV+VKMDDFD+VLGM FLLEH+VI MPLAK  VITG  P++
Sbjct: 491 IGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSV 550

Query: 243 IQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMR 302
           +QT+ RQP  +K ++A+QL++ +SRDE T +AI +    +S E    ++    +KY D+ 
Sbjct: 551 VQTDLRQPDGLKMISAMQLKKGISRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVM 610

Query: 303 QGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVD 344
             S  K L P + I+ +++++ G +   KN    +  EL +
Sbjct: 611 PDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAE 651

[Close]

BLAST of CmaCh19G002940 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 9.8e-67
Identity = 133/281 (47.33%), Postives = 189/281 (67.26%), Query Frame = 0


Query: 63  KCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKP 122
           +CP K A  AFQA L ++S  +    E E +    +  PR+G LK+LS+LQK+V E   P
Sbjct: 401 ECPNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETNTP 460

Query: 123 VECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPI 182
           VE GLMYV+ W+N K  ++T++DS ATHNF+++ EAKRLN+ W +D G+MKAVNSA LPI
Sbjct: 461 VERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPI 520

Query: 183 LGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTI 242
           +G+ KRT I+L  W+G  DFV+VKMDDFD+VLGM FLLEH+VI MPLAK  VITG  P++
Sbjct: 521 IGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSV 580

Query: 243 IQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMR 302
           +QT+ RQP  +K ++A+QL++ LSRDE T +AI +    +S E    ++    +KY D+ 
Sbjct: 581 VQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVM 640

Query: 303 QGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVD 344
             S  K L P + I+ +++++ G +   KN    +  EL +
Sbjct: 641 PDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAE 681

[Close]

BLAST of CmaCh19G002940 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 272.3 bits (695), Expect = 5.7e-69
Identity = 139/281 (49.47%), Postives = 198/281 (70.46%), Query Frame = 0


Query: 63  KCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKP 122
           +CP +AAL AFQA L  +  +E E  ET+   +     PR+G LK+LSALQK+ EE+++P
Sbjct: 361 ECPNRAALRAFQATLTNDRAIEPEGPETDTPPEDADDNPRMGALKFLSALQKKAEEVKEP 420

Query: 123 VECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPI 182
           +E GLMYVE WVN KAA++T++DS ATHNFM++TEA+RLN+ W +D GKMKAVNSA LPI
Sbjct: 421 LERGLMYVEAWVNQKAAKSTMVDSGATHNFMTETEARRLNLXWDKDPGKMKAVNSAALPI 480

Query: 183 LGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTI 242
           +GVAKR  +KL TW+G  DFVIV+MDDFD+VLG+ FLLEHKVI MPLAK  V+T S+P +
Sbjct: 481 MGVAKRVSVKLGTWSGLVDFVIVRMDDFDVVLGIKFLLEHKVIPMPLAKCLVVTSSDPIV 540

Query: 243 IQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMR 302
           +QT+ +QP  +K ++ALQL++ +++DE T +AI V+E  +S E    ++    + Y D+ 
Sbjct: 541 VQTSIKQPSGVKMISALQLKKGIAQDEPTFMAIPVAEGRNSEELVPREIQRVLEAYADVM 600

Query: 303 QGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVD 344
             +  K L P   I+ +++++ G +   KN    +  EL +
Sbjct: 601 PDNLPKNLPPRPGIDHEIELLPGAKPPAKNAYRMAPPELAE 641

[Close]

BLAST of CmaCh19G002940 vs. NCBI nr
Match: TYK26634.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 267.3 bits (682), Expect = 1.8e-67
Identity = 134/281 (47.69%), Postives = 192/281 (68.33%), Query Frame = 0


Query: 63  KCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKP 122
           +CP K A  AFQA L ++S+ +    E EA     +  PR+G LK+LS+LQK+VEE   P
Sbjct: 401 ECPNKTAFNAFQASLASDSENQQNQTEREADQTEEVDNPRMGALKFLSSLQKKVEETNTP 460

Query: 123 VECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPI 182
           VE GLMYV+IW+N K  ++T++DS  THNF+++ EAKRLN+ W +D G+MKAVNSA LPI
Sbjct: 461 VERGLMYVDIWINEKLTKSTMVDSGTTHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPI 520

Query: 183 LGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTI 242
           +G+ KRT I+L  W+G  DFV+VKMDDFD+VLGM FLLEH+VI MPLAK  VITG  P++
Sbjct: 521 IGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSV 580

Query: 243 IQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMR 302
           +QT+ RQP  +K ++A+Q+++ LSRDE T +AI ++   +S E    ++    +KY D+ 
Sbjct: 581 VQTDLRQPDGLKMISAMQVKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVM 640

Query: 303 QGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVD 344
             S  K L P + I+ +++++ G +   KN    +  EL +
Sbjct: 641 PDSLPKSLPPRRMIDHEIELVPGEKPPAKNAYRMAPPELAE 681

[Close]

BLAST of CmaCh19G002940 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 6.9e-67
Identity = 134/281 (47.69%), Postives = 190/281 (67.62%), Query Frame = 0


Query: 63  KCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKP 122
           +CP K A  AFQA L ++S  +    E EA     +  PR+G LK+LS+LQK+V E   P
Sbjct: 371 ECPNKTAFNAFQASLASDSDNQQNQTEREADQTEEVDNPRMGALKFLSSLQKKVGETNTP 430

Query: 123 VECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPI 182
           VE GLMYV+ W+N K  ++T++DS ATHNF+++ EAKRLN+ W +D G+MKAVNSA LPI
Sbjct: 431 VERGLMYVDTWINEKPTKSTMVDSGATHNFITEAEAKRLNLRWEKDAGRMKAVNSAALPI 490

Query: 183 LGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTI 242
           +G+ KRT I+L  W+G  DFV+VKMDDFD+VLGM FLLEH+VI MPLAK  VITG  P++
Sbjct: 491 IGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSV 550

Query: 243 IQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMR 302
           +QT+ RQP  +K ++A+QL++ LSRDE T +AI ++   +S E    ++    +KY D+ 
Sbjct: 551 VQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVM 610

Query: 303 QGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVD 344
             S  K L P + I+ +++++ G +   KN    +  EL +
Sbjct: 611 PDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAE 651

[Close]

BLAST of CmaCh19G002940 vs. NCBI nr
Match: KAA0040442.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 264.6 bits (675), Expect = 1.2e-66
Identity = 133/281 (47.33%), Postives = 190/281 (67.62%), Query Frame = 0


Query: 63  KCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKP 122
           +CP K A  AFQA L ++S  +    E EA+    +  PR+G LK+LS+LQK+V E   P
Sbjct: 371 ECPNKTAFNAFQASLTSDSDNQQSQTEGEANQTEEVDNPRMGALKFLSSLQKKVGETNTP 430

Query: 123 VECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPI 182
           VE GLMYV+ W+N K  ++T++DS ATHNF+++ EAKRLN+ W +D G+MKAVNSA LPI
Sbjct: 431 VERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPI 490

Query: 183 LGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTI 242
           +G+ KRT I+L  W+G  DFV+VKMDDFD+VLGM FLLEH+VI MPLAK  VITG  P++
Sbjct: 491 IGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSV 550

Query: 243 IQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMR 302
           +QT+ RQP  +K ++A+QL++ +SRDE T +AI +    +S E    ++    +KY D+ 
Sbjct: 551 VQTDLRQPDGLKMISAMQLKKGISRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVM 610

Query: 303 QGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVD 344
             S  K L P + I+ +++++ G +   KN    +  EL +
Sbjct: 611 PDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAE 651

[Close]

BLAST of CmaCh19G002940 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-66
Identity = 133/281 (47.33%), Postives = 189/281 (67.26%), Query Frame = 0


Query: 63  KCPQKAALCAFQAKLRANSKVEYETVETEASLDRTIGYPRVGLLKYLSALQKRVEEIEKP 122
           +CP K A  AFQA L ++S  +    E E +    +  PR+G LK+LS+LQK+V E   P
Sbjct: 397 ECPNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETNTP 456

Query: 123 VECGLMYVEIWVNHKAARNTIIDSRATHNFMSKTEAKRLNIFWHRDVGKMKAVNSATLPI 182
           VE GLMYV+ W+N K  ++T++DS ATHNF+++ EAKRLN+ W +D G+MKAVNSA LPI
Sbjct: 457 VERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPI 516

Query: 183 LGVAKRTPIKLKTWTGQTDFVIVKMDDFDIVLGMNFLLEHKVIHMPLAKSFVITGSNPTI 242
           +G+ KRT I+L  W+G  DFV+VKMDDFD+VLGM FLLEH+VI MPLAK  VITG  P++
Sbjct: 517 IGLVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSV 576

Query: 243 IQTNTRQPRRIKKMTALQLRQDLSRDELTLVAITVSEEGSSSEPTSTKVSWSTKKYHDMR 302
           +QT+ RQP  +K ++A+QL++ LSRDE T +AI +    +S E    ++    +KY D+ 
Sbjct: 577 VQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVM 636

Query: 303 QGSQTKYLSPAKKINSKVDVILGVELLGKNECHTSELELVD 344
             S  K L P + I+ +++++ G +   KN    +  EL +
Sbjct: 637 PDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAE 677

The following BLAST results are available for this feature:

BLAST of CmaCh19G002940 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G002940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLQ6	2.7e-69	49.47	uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5D3DSU8	8.8e-68	47.69	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002800 P...	[more]
A0A5D3C9P8	3.4e-67	47.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5A7TAG9	5.7e-67	47.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35...	[more]
A0A5D3C4R1	9.8e-67	47.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of CmaCh19G002940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155185.1	5.7e-69	49.47	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
TYK26634.1	1.8e-67	47.69	polyprotein [Cucumis melo var. makuwa]	[more]
TYK07954.1	6.9e-67	47.69	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0040442.1	1.2e-66	47.33	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	2.0e-66	47.33	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh19G002940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019103	Aspartic peptidase, DDI1-type	PFAM	PF09668	Asp_protease	coord: 120..225 e-value: 1.3E-7 score: 31.5
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 108..247 e-value: 2.3E-18 score: 68.2
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 126..224
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 130..219 e-value: 4.54975E-16 score: 70.8284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G002940.1	CmaCh19G002940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0016740	transferase activity