CmaCh19G002660 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G002660
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cma_Chr19: 1903036 .. 1904382 (+)
RNA-Seq Expression	CmaCh19G002660
Synteny	CmaCh19G002660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGATCACGGGGCTCGCCAACAGCATCACCACTCTCGGTGGCAGCATCAGCGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCCGATCACCTCGAGCAAGTTGCGATTTCGATCGAGACATTGCTTGACGTGAACGACCTAACGGTGGAAGAGGTGATCGGAAGACTGCGTAACATCGAGCAGCGGAAGAAAAATATCGTTTCAGCTGTCGACCAGGAGGGTCGTCTACTCCTCACTGAAGAGGAATGGCTTGCATGCCTAAAGCTCTGTGACGACACCGGCGAGAGCAATGGGCCTTCCAGCCGCAAAGGCGGTAAGAAGCCATGGAAATCTCGCCGGCACATGCGCGGGAAAGAGGAGGATCAAAAGAAGGAGGAGCCGACTGATGACGAGCCAATCCAGTGCTCGTATTGTGGGAAGAGAGATCACCTGAGCAAGAATTGCTGGAGCAAGCTCAGGAACAAGGAGACGCTCGAGAAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCGACCCTTTTCATGGTGACTGCATCAGTCCTACCTGATGTCCCTAATTCCGATTCCAAATCCATAGAGGTAATCGACGACGACATAATTGCTCCGGTGAGCGTCAAACCCGAGGAAGAGCTCCCCAAATCCACAGAGGTAATCGACGACGGCATAACTACTCCGGTGAGCGTCGAACCCGAGGAAGAGCTCCAATTGTGCATAACAAAGGCACCGGCTGGGGAGCCAATTCAACTGAAGGAGGAGCGAGTGTTCGCTCAAATCGGTGAAAGAGGCGAGCAGCAAGAGCACCGGCGATGGGTCCTCGACACGGGGGCAACAAACCATATGACCAGGGCCAAGTTTGAGTTCTCCGAGCTTGACTCGGGGATTCGCGGGACGGTGAAATTCGGTGACGGCTCCGTCGTCGAGATCGAAGGGCACGACACCATCCTGTTCGTCGGCAAGGGAGGCAAACATCACAAGCTGACCGACGTCTACTTCATCTCGAGGCTCAAGGCTAATATTGTGAGCTTGGGTCAACTCAATAAGGCCGGCTGCCACATTTCCATCAAGCGCGGGCTACTTAGGATCCGCGATGATCGACGACGGTTGCTCACGCAAGTTCGGTGCACGGCAAACTGCCTTTACATCCTAGAGTTGGAGATAGAGCAACCAGTCAACCTCTCGGCCAGGTACCGGAGGATGGAAGACCTATTAGGAAGAGGTGAACCACCTGGACTGGCGGCGCGCCAACTCGAAGAAGAGGTGGCCGAACATGATGGTCTGGAGGACATGCCGCCAGGGACACCGAGCCATAGGGCTCAAATCGGAGTACAAACAAAATAA

mRNA sequence

ATGCGGATCACGGGGCTCGCCAACAGCATCACCACTCTCGGTGGCAGCATCAGCGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCCGATCACCTCGAGCAAGTTGCGATTTCGATCGAGACATTGCTTGACGTGAACGACCTAACGGTGGAAGAGGTGATCGGAAGACTGCGTAACATCGAGCAGCGGAAGAAAAATATCGTTTCAGCTGTCGACCAGGAGGGTCGTCTACTCCTCACTGAAGAGGAATGGCTTGCATGCCTAAAGCTCTGTGACGACACCGGCGAGAGCAATGGGCCTTCCAGCCGCAAAGGCGGTAAGAAGCCATGGAAATCTCGCCGGCACATGCGCGGGAAAGAGGAGGATCAAAAGAAGGAGGAGCCGACTGATGACGAGCCAATCCAGTGCTCGTATTGTGGGAAGAGAGATCACCTGAGCAAGAATTGCTGGAGCAAGCTCAGGAACAAGGAGACGCTCGAGAAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCGACCCTTTTCATGGTGACTGCATCAGTCCTACCTGATGTCCCTAATTCCGATTCCAAATCCATAGAGGTAATCGACGACGACATAATTGCTCCGGTGAGCGTCAAACCCGAGGAAGAGCTCCCCAAATCCACAGAGGTAATCGACGACGGCATAACTACTCCGGTGAGCGTCGAACCCGAGGAAGAGCTCCAATTGTGCATAACAAAGGCACCGGCTGGGGAGCCAATTCAACTGAAGGAGGAGCGAGTGTTCGCTCAAATCGGTGAAAGAGGCGAGCAGCAAGAGCACCGGCGATGGGTCCTCGACACGGGGGCAACAAACCATATGACCAGGGCCAAGTTTGAGTTCTCCGAGCTTGACTCGGGGATTCGCGGGACGGTGAAATTCGGTGACGGCTCCGTCGTCGAGATCGAAGGGCACGACACCATCCTGTTCGTCGGCAAGGGAGGCAAACATCACAAGCTGACCGACGTCTACTTCATCTCGAGGCTCAAGGCTAATATTGTGAGCTTGGGTCAACTCAATAAGGCCGGCTGCCACATTTCCATCAAGCGCGGGCTACTTAGGATCCGCGATGATCGACGACGGTTGCTCACGCAAGTTCGGTGCACGGCAAACTGCCTTTACATCCTAGAGTTGGAGATAGAGCAACCAGTCAACCTCTCGGCCAGGTACCGGAGGATGGAAGACCTATTAGGAAGAGGTGAACCACCTGGACTGGCGGCGCGCCAACTCGAAGAAGAGGTGGCCGAACATGATGGTCTGGAGGACATGCCGCCAGGGACACCGAGCCATAGGGCTCAAATCGGAGTACAAACAAAATAA

Coding sequence (CDS)

ATGCGGATCACGGGGCTCGCCAACAGCATCACCACTCTCGGTGGCAGCATCAGCGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCCGATCACCTCGAGCAAGTTGCGATTTCGATCGAGACATTGCTTGACGTGAACGACCTAACGGTGGAAGAGGTGATCGGAAGACTGCGTAACATCGAGCAGCGGAAGAAAAATATCGTTTCAGCTGTCGACCAGGAGGGTCGTCTACTCCTCACTGAAGAGGAATGGCTTGCATGCCTAAAGCTCTGTGACGACACCGGCGAGAGCAATGGGCCTTCCAGCCGCAAAGGCGGTAAGAAGCCATGGAAATCTCGCCGGCACATGCGCGGGAAAGAGGAGGATCAAAAGAAGGAGGAGCCGACTGATGACGAGCCAATCCAGTGCTCGTATTGTGGGAAGAGAGATCACCTGAGCAAGAATTGCTGGAGCAAGCTCAGGAACAAGGAGACGCTCGAGAAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCGACCCTTTTCATGGTGACTGCATCAGTCCTACCTGATGTCCCTAATTCCGATTCCAAATCCATAGAGGTAATCGACGACGACATAATTGCTCCGGTGAGCGTCAAACCCGAGGAAGAGCTCCCCAAATCCACAGAGGTAATCGACGACGGCATAACTACTCCGGTGAGCGTCGAACCCGAGGAAGAGCTCCAATTGTGCATAACAAAGGCACCGGCTGGGGAGCCAATTCAACTGAAGGAGGAGCGAGTGTTCGCTCAAATCGGTGAAAGAGGCGAGCAGCAAGAGCACCGGCGATGGGTCCTCGACACGGGGGCAACAAACCATATGACCAGGGCCAAGTTTGAGTTCTCCGAGCTTGACTCGGGGATTCGCGGGACGGTGAAATTCGGTGACGGCTCCGTCGTCGAGATCGAAGGGCACGACACCATCCTGTTCGTCGGCAAGGGAGGCAAACATCACAAGCTGACCGACGTCTACTTCATCTCGAGGCTCAAGGCTAATATTGTGAGCTTGGGTCAACTCAATAAGGCCGGCTGCCACATTTCCATCAAGCGCGGGCTACTTAGGATCCGCGATGATCGACGACGGTTGCTCACGCAAGTTCGGTGCACGGCAAACTGCCTTTACATCCTAGAGTTGGAGATAGAGCAACCAGTCAACCTCTCGGCCAGGTACCGGAGGATGGAAGACCTATTAGGAAGAGGTGAACCACCTGGACTGGCGGCGCGCCAACTCGAAGAAGAGGTGGCCGAACATGATGGTCTGGAGGACATGCCGCCAGGGACACCGAGCCATAGGGCTCAAATCGGAGTACAAACAAAATAA

Protein sequence

MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLRNIEQRKKNIVSAVDQEGRLLLTEEEWLACLKLCDDTGESNGPSSRKGGKKPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEEDEPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSARYRRMEDLLGRGEPPGLAARQLEEEVAEHDGLEDMPPGTPSHRAQIGVQTK

Homology

[Close]

BLAST of CmaCh19G002660 vs. ExPASy TrEMBL
Match: A0A6J1HVQ4 (uncharacterized protein LOC111467102 OS=Cucurbita maxima OX=3661 GN=LOC111467102 PE=4 SV=1)

HSP 1 Score: 783.9 bits (2023), Expect = 3.6e-223
Identity = 402/423 (95.04%), Postives = 402/423 (95.04%), Query Frame = 0


Query: 26  MLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLRNIEQRKKNIVSAVDQEGRLLLTEEE 85
           MLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLRNIEQRKKNIVSAVDQEGRLLLTEEE
Sbjct: 1   MLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLRNIEQRKKNIVSAVDQEGRLLLTEEE 60

Query: 86  WLACLKLCDDTGESNGPSSRKGGKKPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRD 145
           WLACLKLCDDTGESNGPSSRKGGKKPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRD
Sbjct: 61  WLACLKLCDDTGESNGPSSRKGGKKPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRD 120

Query: 146 HLSKNCWSKLRNKETLEKAHVAQSEEDEPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAP 205
           HLSKNCWSKLRNKETLEKAHVAQSEEDEPTLFMVTASVLPD                   
Sbjct: 121 HLSKNCWSKLRNKETLEKAHVAQSEEDEPTLFMVTASVLPD------------------- 180

Query: 206 VSVKPEEELPKSTEVIDDGITTPVSVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERG 265
             VKPEEELPKSTEVIDDGITTPVSVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERG
Sbjct: 181 --VKPEEELPKSTEVIDDGITTPVSVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERG 240

Query: 266 EQQEHRRWVLDTGATNHMTRAKFEFSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGK 325
           EQQEHRRWVLDTGATNHMTRAKFEFSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGK
Sbjct: 241 EQQEHRRWVLDTGATNHMTRAKFEFSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGK 300

Query: 326 HHKLTDVYFISRLKANIVSLGQLNKAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYIL 385
           HHKLTDVYFISRLKANIVSLGQLNKAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYIL
Sbjct: 301 HHKLTDVYFISRLKANIVSLGQLNKAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYIL 360

Query: 386 ELEIEQPVNLSARYRRMEDLLGRGEPPGLAARQLEEEVAEHDGLEDMPPGTPSHRAQIGV 445
           ELEIEQPVNLSARYRRMEDLLGRGEPPGLAARQLEEEVAEHDGLEDMPPGTPSHRAQIGV
Sbjct: 361 ELEIEQPVNLSARYRRMEDLLGRGEPPGLAARQLEEEVAEHDGLEDMPPGTPSHRAQIGV 402

Query: 446 QTK 449
           QTK
Sbjct: 421 QTK 402

[Close]

BLAST of CmaCh19G002660 vs. ExPASy TrEMBL
Match: Q0J5Y3 (Os08g0389500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0389500 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 8.5e-71
Identity = 176/406 (43.35%), Postives = 241/406 (59.36%), Query Frame = 0


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           +RITGLAN++ TLG +IS+ ++V+KML VVP+HLEQ+A+++ETLLD+N ++VEEV GRLR
Sbjct: 162 VRITGLANNLRTLGDNISDADVVRKMLDVVPEHLEQIAVAVETLLDLNTVSVEEVTGRLR 221

Query: 61  NIEQRKKNIVSAVDQEGRLLLTEEEWLACLKLCDDTGESNGPSSRKGG--KKPWKSRRHM 120
            +EQR+      V+ +GRLLLT+EEW+A LK    +GE   PS   GG  K+   SRRH 
Sbjct: 222 AVEQRRHRSAPVVNNQGRLLLTQEEWMAKLKNPGASGEKGTPSGSGGGGNKRTGGSRRHD 281

Query: 121 RGKEEDQKKEEPTD-----DEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEEDE 180
           RGK   ++   P D      +  +C YCGK+ H +K C S+LR     ++AH+AQ EE+E
Sbjct: 282 RGKGGSRQAAGPGDGSNQPKKTDKCRYCGKKGHWAKECRSRLR-----DEAHLAQGEEEE 341

Query: 181 PTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVEP 240
             + MV  + +  + +S                        P+                 
Sbjct: 342 EPMLMVATAQVNAISSSSP----------------------PR----------------- 401

Query: 241 EEELQLCITKAPAGEPIQLKEERVFAQIGERGEQ-QEHRRWVLDTGATNHMTRAKFEFSE 300
                   T  PA E I L E ++F Q+G  GE   E  RW+LDTGATNHMT  +  FSE
Sbjct: 402 -------FTSLPALEQIHLDESKLFVQLG--GEHGGEATRWILDTGATNHMTGTRSAFSE 461

Query: 301 LDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAG 360
           L++GIRGTVKFGDGSVV IEG  T+LF  K G+H  L  VY I RL  NIVSLGQL++  
Sbjct: 462 LNTGIRGTVKFGDGSVVGIEGRGTVLFKCKDGEHQALEGVYHIPRLTTNIVSLGQLDEEK 514

Query: 361 CHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
              S + G+L+I + +RRLL +V  + N LY+++L I +PV L+A+
Sbjct: 522 FKWSCEDGVLKIWNKQRRLLAKVVRSPNRLYVVKLNIGRPVCLAAQ 514

[Close]

BLAST of CmaCh19G002660 vs. ExPASy TrEMBL
Match: Q7XPB1 (OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0026E15.10 PE=4 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 1.4e-70
Identity = 173/406 (42.61%), Postives = 241/406 (59.36%), Query Frame = 0


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L++EEV GRLR
Sbjct: 160 MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLR 219

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKGGKKPW 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S+G   R+G  +  
Sbjct: 220 SVEQRKQCKTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSGNGDRRGRGRGK 279

Query: 121 KSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEED 180
           K       KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ E++
Sbjct: 280 KD--DGAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDE 339

Query: 181 EPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVE 240
           EP L +    + P  P             + AP +V      P++               
Sbjct: 340 EPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA--------------- 399

Query: 241 PEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSE 300
                      +P GE + + E +VFAQ+ + GE  +   W+LDTGATNHMT ++  F+E
Sbjct: 400 ----------PSPIGE-LAVVEAKVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSAFAE 459

Query: 301 LDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAG 360
           LD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+++G
Sbjct: 460 LDTAVTGTVRFGDGSVVRIEGRVTVLFSCRFGEHRGIAGVYYIPRLTANIVSLGQLDRSG 519

Query: 361 CHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
             + I  G+L + D R  LL +VR + +CLY ++L+I++PV L+AR
Sbjct: 520 SKVLIHHGILHVWDPRGHLLVRVRRSDDCLYTIKLDIDRPVCLAAR 520

[Close]

BLAST of CmaCh19G002660 vs. ExPASy TrEMBL
Match: A0A5S6RCQ1 (Putative pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0042K08.6 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.2e-70
Identity = 175/409 (42.79%), Postives = 240/409 (58.68%), Query Frame = 0


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN++++EEV GRLR
Sbjct: 254 MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNEVSLEEVTGRLR 313

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKG---GK 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S G    +G   GK
Sbjct: 314 SVEQRKQRKTAAASSQVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGGNGDHRGRGRGK 373

Query: 121 KPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQS 180
           K   +      KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ 
Sbjct: 374 KDGGA-----PKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQE 433

Query: 181 EEDEPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPV 240
           E++EP L +    + P  P             + AP +V      P++            
Sbjct: 434 EDEEPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA------------ 493

Query: 241 SVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFE 300
                         +P GE + + E RVFAQ+ + GE  +   W+LDTGATNHMT ++  
Sbjct: 494 -------------PSPMGE-LAVVEARVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSA 553

Query: 301 FSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLN 360
           F+ELD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+
Sbjct: 554 FAELDTVVTGTVRFGDGSVVRIEGRGTVLFSCRFGEHRGIAGVYYIPRLMANIVSLGQLD 613

Query: 361 KAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
           ++G  + I  G+LR+ D R  LL +VR + +CLY + L I++PV L+AR
Sbjct: 614 RSGSKVLIHHGVLRVWDPRGHLLVRVRRSDDCLYTINLYIDRPVCLAAR 614

[Close]

BLAST of CmaCh19G002660 vs. ExPASy TrEMBL
Match: Q8SAW7 (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g07460 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.2e-70
Identity = 175/409 (42.79%), Postives = 240/409 (58.68%), Query Frame = 0


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN++++EEV GRLR
Sbjct: 254 MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNEVSLEEVTGRLR 313

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKG---GK 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S G    +G   GK
Sbjct: 314 SVEQRKQRKTAAASSQVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGGNGDHRGRGRGK 373

Query: 121 KPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQS 180
           K   +      KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ 
Sbjct: 374 KDGGA-----PKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQE 433

Query: 181 EEDEPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPV 240
           E++EP L +    + P  P             + AP +V      P++            
Sbjct: 434 EDEEPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA------------ 493

Query: 241 SVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFE 300
                         +P GE + + E RVFAQ+ + GE  +   W+LDTGATNHMT ++  
Sbjct: 494 -------------PSPMGE-LAVVEARVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSA 553

Query: 301 FSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLN 360
           F+ELD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+
Sbjct: 554 FAELDTVVTGTVRFGDGSVVRIEGRGTVLFSCRFGEHRGIAGVYYIPRLMANIVSLGQLD 613

Query: 361 KAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
           ++G  + I  G+LR+ D R  LL +VR + +CLY + L I++PV L+AR
Sbjct: 614 RSGSKVLIHHGVLRVWDPRGHLLVRVRRSDDCLYTINLYIDRPVCLAAR 614

[Close]

BLAST of CmaCh19G002660 vs. NCBI nr
Match: XP_022967658.1 (uncharacterized protein LOC111467102 [Cucurbita maxima])

HSP 1 Score: 783.9 bits (2023), Expect = 7.5e-223
Identity = 402/423 (95.04%), Postives = 402/423 (95.04%), Query Frame = 0


Query: 26  MLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLRNIEQRKKNIVSAVDQEGRLLLTEEE 85
           MLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLRNIEQRKKNIVSAVDQEGRLLLTEEE
Sbjct: 1   MLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLRNIEQRKKNIVSAVDQEGRLLLTEEE 60

Query: 86  WLACLKLCDDTGESNGPSSRKGGKKPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRD 145
           WLACLKLCDDTGESNGPSSRKGGKKPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRD
Sbjct: 61  WLACLKLCDDTGESNGPSSRKGGKKPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRD 120

Query: 146 HLSKNCWSKLRNKETLEKAHVAQSEEDEPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAP 205
           HLSKNCWSKLRNKETLEKAHVAQSEEDEPTLFMVTASVLPD                   
Sbjct: 121 HLSKNCWSKLRNKETLEKAHVAQSEEDEPTLFMVTASVLPD------------------- 180

Query: 206 VSVKPEEELPKSTEVIDDGITTPVSVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERG 265
             VKPEEELPKSTEVIDDGITTPVSVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERG
Sbjct: 181 --VKPEEELPKSTEVIDDGITTPVSVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERG 240

Query: 266 EQQEHRRWVLDTGATNHMTRAKFEFSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGK 325
           EQQEHRRWVLDTGATNHMTRAKFEFSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGK
Sbjct: 241 EQQEHRRWVLDTGATNHMTRAKFEFSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGK 300

Query: 326 HHKLTDVYFISRLKANIVSLGQLNKAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYIL 385
           HHKLTDVYFISRLKANIVSLGQLNKAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYIL
Sbjct: 301 HHKLTDVYFISRLKANIVSLGQLNKAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYIL 360

Query: 386 ELEIEQPVNLSARYRRMEDLLGRGEPPGLAARQLEEEVAEHDGLEDMPPGTPSHRAQIGV 445
           ELEIEQPVNLSARYRRMEDLLGRGEPPGLAARQLEEEVAEHDGLEDMPPGTPSHRAQIGV
Sbjct: 361 ELEIEQPVNLSARYRRMEDLLGRGEPPGLAARQLEEEVAEHDGLEDMPPGTPSHRAQIGV 402

Query: 446 QTK 449
           QTK
Sbjct: 421 QTK 402

[Close]

BLAST of CmaCh19G002660 vs. NCBI nr
Match: BAF23632.1 (Os08g0389500 [Oryza sativa Japonica Group])

HSP 1 Score: 277.7 bits (709), Expect = 1.7e-70
Identity = 176/406 (43.35%), Postives = 241/406 (59.36%), Query Frame = 0


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           +RITGLAN++ TLG +IS+ ++V+KML VVP+HLEQ+A+++ETLLD+N ++VEEV GRLR
Sbjct: 162 VRITGLANNLRTLGDNISDADVVRKMLDVVPEHLEQIAVAVETLLDLNTVSVEEVTGRLR 221

Query: 61  NIEQRKKNIVSAVDQEGRLLLTEEEWLACLKLCDDTGESNGPSSRKGG--KKPWKSRRHM 120
            +EQR+      V+ +GRLLLT+EEW+A LK    +GE   PS   GG  K+   SRRH 
Sbjct: 222 AVEQRRHRSAPVVNNQGRLLLTQEEWMAKLKNPGASGEKGTPSGSGGGGNKRTGGSRRHD 281

Query: 121 RGKEEDQKKEEPTD-----DEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEEDE 180
           RGK   ++   P D      +  +C YCGK+ H +K C S+LR     ++AH+AQ EE+E
Sbjct: 282 RGKGGSRQAAGPGDGSNQPKKTDKCRYCGKKGHWAKECRSRLR-----DEAHLAQGEEEE 341

Query: 181 PTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVEP 240
             + MV  + +  + +S                        P+                 
Sbjct: 342 EPMLMVATAQVNAISSSSP----------------------PR----------------- 401

Query: 241 EEELQLCITKAPAGEPIQLKEERVFAQIGERGEQ-QEHRRWVLDTGATNHMTRAKFEFSE 300
                   T  PA E I L E ++F Q+G  GE   E  RW+LDTGATNHMT  +  FSE
Sbjct: 402 -------FTSLPALEQIHLDESKLFVQLG--GEHGGEATRWILDTGATNHMTGTRSAFSE 461

Query: 301 LDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAG 360
           L++GIRGTVKFGDGSVV IEG  T+LF  K G+H  L  VY I RL  NIVSLGQL++  
Sbjct: 462 LNTGIRGTVKFGDGSVVGIEGRGTVLFKCKDGEHQALEGVYHIPRLTTNIVSLGQLDEEK 514

Query: 361 CHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
              S + G+L+I + +RRLL +V  + N LY+++L I +PV L+A+
Sbjct: 522 FKWSCEDGVLKIWNKQRRLLAKVVRSPNRLYVVKLNIGRPVCLAAQ 514

[Close]

BLAST of CmaCh19G002660 vs. NCBI nr
Match: CAE03692.2 (OSJNBb0026E15.10 [Oryza sativa Japonica Group])

HSP 1 Score: 276.9 bits (707), Expect = 3.0e-70
Identity = 173/406 (42.61%), Postives = 241/406 (59.36%), Query Frame = 0


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L++EEV GRLR
Sbjct: 160 MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLR 219

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKGGKKPW 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S+G   R+G  +  
Sbjct: 220 SVEQRKQCKTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSGNGDRRGRGRGK 279

Query: 121 KSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEED 180
           K       KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ E++
Sbjct: 280 KD--DGAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDE 339

Query: 181 EPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVE 240
           EP L +    + P  P             + AP +V      P++               
Sbjct: 340 EPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA--------------- 399

Query: 241 PEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSE 300
                      +P GE + + E +VFAQ+ + GE  +   W+LDTGATNHMT ++  F+E
Sbjct: 400 ----------PSPIGE-LAVVEAKVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSAFAE 459

Query: 301 LDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAG 360
           LD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+++G
Sbjct: 460 LDTAVTGTVRFGDGSVVRIEGRVTVLFSCRFGEHRGIAGVYYIPRLTANIVSLGQLDRSG 519

Query: 361 CHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
             + I  G+L + D R  LL +VR + +CLY ++L+I++PV L+AR
Sbjct: 520 SKVLIHHGILHVWDPRGHLLVRVRRSDDCLYTIKLDIDRPVCLAAR 520

[Close]

BLAST of CmaCh19G002660 vs. NCBI nr
Match: AAL77140.1 (Putative pol polyprotein [Oryza sativa Japonica Group] >AAP52245.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 275.8 bits (704), Expect = 6.6e-70
Identity = 175/409 (42.79%), Postives = 240/409 (58.68%), Query Frame = 0


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++ TLG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN++++EEV GRLR
Sbjct: 254 MRIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNEVSLEEVTGRLR 313

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLA----CLKLCDDTGESNGPSSRKG---GK 120
           ++EQRK+   +A    VD  GRLL TEEEWLA       L D    S G    +G   GK
Sbjct: 314 SVEQRKQRKTAAASSQVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGGNGDHRGRGRGK 373

Query: 121 KPWKSRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQS 180
           K   +      KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ 
Sbjct: 374 KDGGA-----PKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQE 433

Query: 181 EEDEPTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPV 240
           E++EP L +    + P  P             + AP +V      P++            
Sbjct: 434 EDEEPALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA------------ 493

Query: 241 SVEPEEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFE 300
                         +P GE + + E RVFAQ+ + GE  +   W+LDTGATNHMT ++  
Sbjct: 494 -------------PSPMGE-LAVVEARVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSA 553

Query: 301 FSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLN 360
           F+ELD+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+
Sbjct: 554 FAELDTVVTGTVRFGDGSVVRIEGRGTVLFSCRFGEHRGIAGVYYIPRLMANIVSLGQLD 613

Query: 361 KAGCHISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
           ++G  + I  G+LR+ D R  LL +VR + +CLY + L I++PV L+AR
Sbjct: 614 RSGSKVLIHHGVLRVWDPRGHLLVRVRRSDDCLYTINLYIDRPVCLAAR 614

[Close]

BLAST of CmaCh19G002660 vs. NCBI nr
Match: CAH66352.1 (OSIGBa0135C09.3 [Oryza sativa])

HSP 1 Score: 272.3 bits (695), Expect = 7.3e-69
Identity = 169/405 (41.73%), Postives = 241/405 (59.51%), Query Frame = 0


Query: 1   MRITGLANSITTLGGSISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVIGRLR 60
           MRI GLAN++  LG +I+E E+V+K+LQVVP+HL+Q+AISIETLLDVN+L++EEV G LR
Sbjct: 93  MRIGGLANNLRILGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGCLR 152

Query: 61  NIEQRKKNIVSA----VDQEGRLLLTEEEWLACLKLC---DDTGESNGPSSRKGGKKPWK 120
           ++EQRK++  +A    VD  GRLL TEEEWLA  +      D   S+G +  + G+   K
Sbjct: 153 SVEQRKQHKTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGGNGDRQGRGRGK 212

Query: 121 SRRHMRGKEEDQKKEEPTDDEPIQCSYCGKRDHLSKNCWSKLRNKETLEKAHVAQSEEDE 180
            +     KE   K   P    P  C  CGKR H +K+C    R+K   ++A+VAQ E++E
Sbjct: 213 -KDDGAPKEAQSKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDEE 272

Query: 181 PTLFMVTASVLPDVPNSDSKSIEVIDDDIIAPVSVKPEEELPKSTEVIDDGITTPVSVEP 240
           P L +    + P  P             + AP +V      P++                
Sbjct: 273 PALLLAKVQLDPPRPR------------VAAPTNVVSPPSAPRA---------------- 332

Query: 241 EEELQLCITKAPAGEPIQLKEERVFAQIGERGEQQEHRRWVLDTGATNHMTRAKFEFSEL 300
                     +P GE + + E +VFAQ+ + GE  +   W+LDTGATNHMT ++  F++L
Sbjct: 333 ---------PSPMGE-LAVVEAKVFAQLDDGGE-HDPAMWILDTGATNHMTGSRSAFAKL 392

Query: 301 DSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDVYFISRLKANIVSLGQLNKAGC 360
           D+ + GTV+FGDGSVV IEG  T+LF  + G+H  +  VY+I RL ANIVSLGQL+++G 
Sbjct: 393 DTAVTGTVRFGDGSVVRIEGRGTVLFSCRFGEHRGIAGVYYIPRLTANIVSLGQLDRSGS 452

Query: 361 HISIKRGLLRIRDDRRRLLTQVRCTANCLYILELEIEQPVNLSAR 399
            + I  G+LR+ D R  LL +VR + +CLY ++L I++PV L+AR
Sbjct: 453 KVLIHHGVLRVWDPRGHLLVRVRRSDDCLYTIKLNIDRPVYLAAR 453

[Close]

BLAST of CmaCh19G002660 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 43.5 bits (101), Expect = 5.2e-04
Identity = 23/76 (30.26%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 273 WVLDTGATNHMTRAKFEFSELDSGIRGTVKFGDGSVVEIEGHDTILFVGKGGKHHKLTDV 332
           W++   A  +MT     F+ LD   + TV   DG+V+ +EG   +    K GK   + +V
Sbjct: 280 WIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNV 339

Query: 333 YFISRLKANIVSLGQL 349
            F+  L  N++S G++
Sbjct: 340 IFVPGLNRNVLSFGKM 355

The following BLAST results are available for this feature:

BLAST of CmaCh19G002660 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G002660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVQ4	3.6e-223	95.04	uncharacterized protein LOC111467102 OS=Cucurbita maxima OX=3661 GN=LOC111467102...	[more]
Q0J5Y3	8.5e-71	43.35	Os08g0389500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0389500 PE...	[more]
Q7XPB1	1.4e-70	42.61	OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0026E...	[more]
A0A5S6RCQ1	3.2e-70	42.79	Putative pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0042K...	[more]
Q8SAW7	3.2e-70	42.79	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]

BLAST of CmaCh19G002660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967658.1	7.5e-223	95.04	uncharacterized protein LOC111467102 [Cucurbita maxima]	[more]
BAF23632.1	1.7e-70	43.35	Os08g0389500 [Oryza sativa Japonica Group]	[more]
CAE03692.2	3.0e-70	42.61	OSJNBb0026E15.10 [Oryza sativa Japonica Group]	[more]
AAL77140.1	6.6e-70	42.79	Putative pol polyprotein [Oryza sativa Japonica Group] >AAP52245.1 retrotranspos...	[more]
CAH66352.1	7.3e-69	41.73	OSIGBa0135C09.3 [Oryza sativa]	[more]

BLAST of CmaCh19G002660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21000.1	5.2e-04	30.26	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 137..153 e-value: 0.0084 score: 24.0
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..68 e-value: 2.5E-6 score: 27.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 424..448
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..138
None	No IPR available	PANTHER	PTHR34676:SF11	ZINC FINGER, CCHC-TYPE-RELATED	coord: 2..178 coord: 246..404
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 2..178 coord: 246..404

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G002660.1	CmaCh19G002660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding