CmaCh19G002600 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G002600
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr19: 1862812 .. 1865135 (-)
RNA-Seq ExpressionCmaCh19G002600
SyntenyCmaCh19G002600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGACGCTCAGAGAGATGGTGCATAACCCCTTCGACAGAAGTGTGAATGATGAAGACATAAAGGTACTTAGCCATGTGGGTTAAAAAAAATTGTATCACCCTTGTTTGTTTAAAAATAAAATGATAGTTTACTTGGTTCCCCTTTCTATTATTTTTTTATTCATTCCCTCTGTTTACTTCAATATGTGGTTGAAAGCCTACCTCTAGTAGGTATTGTCCTCTTTGGCTTTCTCTTTCGAGCTTCCCCTCAAGCTTTTTAAAACGCGTCTGTTAGGGAAAGATTTCCACACTCTTATAAAGAATGTTTTGTTCTCCTCTCCAACCGATGTGGGGATCTCACAATCTACCACCTTCGAGGCCCAGCGTCCTTGCTGGCACACCGCCTCATATCCATCCCCCTTCGAGGCTTAGCCTCCTTACTGACACATCGCCCAGTGTCTAGTTCTGATACCATTTGTAACGGCCCAAGCCTACCGCTAGCAAATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCTTCAAGATTTTTAAAACGCGTCTGCCACCCTTATAAAGAATGTTTTGTTCTCCTCCTCAACCGATGTGGAATCTCACGATCCACCCCCCTTCAAGGCCTGGCGTCCTCACTGACACTCGCTCCTTTCTCCGATCGACGTGGGACCTCCCAATCCACTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCAAGGCCTAGTGTCCTGGCTGGGCACACCACCTCGTATCCACCCCTTTTGGGGTTCAGCCTCTTTGCTGACACATTGTCTGGTATTTGCCTCTAATATCATTTGTAACAGCCTAAATATTGTCCTCTTTTGCCTTTCCCTTTCGAGCTTCCCCTCAAGACTTTTAAAACGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCATCATTCTCCTCTTCAACTGACGTGGAATCTCACAAAAATGATATCTATTTTTAAAAACATATCCCCTTTAAGGATGTCGATCGCTCCATGTTACAAGCAAATGATGTTAGTTTGAAGACTCTACTTGGAACATGAGATTTCAGCCATTTTTGTTGACTTAGATTTTTTTCTTTGTGTTTAATATTCTTTGATTGTTTATCTTGCTTGTTTTATTTTATTTCACATACCATCACAAAGGCTCCTACCCAGGCTGTACCCAATATGATTAGAATCGAGCACGGAGTAATGTCGACCTTCAAAAAATGTATGTTTTTGTGCAGGCACCCTTAACATCCTCACCGAGTTTGGTCATAGGATTGTGGTCGAGAAGCGTATGTTTTTGCGTGGATGAACAAAAAATCCTCATTCAATTTTGTTATATAATCATGTACGACGATGTGACCATTTTGGGAGCATTGTCATTTAGAACTTTAGAATTATCCTTACTTGTTTGGAGCTTTTATGCTATTGGTTTGATTGTTAGCGCTCTGAGTCATTTTCTTTATGAAGGGAAGTCTTAGAATGGTAGATACCCCATGCCTACACGAGGAAGATATGTGGTAATTCTATCCCTATGGTCGGAGTAATTGCAACGTGTATGAAAAGCTACAAGGCCAAGGGATGAGAAGACCATCTCCTTCGTGTGTTGGCGTAGATTTTGTTCGCAACCATGTTGAAGATTTGAGAGTTTAATAGGAGAATTTGAGTCCAAAGTACAAAGCGGAAATTGCATACGTCAAGGAATAGCAGTGTAACGGTTGTATGTTTTCAATTGTGTGGGGTTATGATCTTGGCATACTCATGACAAACATTAAAGGAAACTCAAGCCCTATTCACATTTTTTTCGCCCGACTTTGTGGCTTCTCCTTGCTACCTTATCTTTAAAAGTTGAGCCTTTATTCTAACAGGAAAGTCACCTTTCTACGACCTTTATACTCATAGTTCAGAGAGGTGCCAAACAGTTTAAAAATGGG

mRNA sequence

ATGATGACGCTCAGAGAGATGGTGCATAACCCCTTCGACAGAAGTGTGAATGATGAAGACATAAAGGCACCCTTAACATCCTCACCGAGTTTGGTCATAGGATTGTGGTCGAGAAGCGTATGTTTTTGCGTGGATGAACAAAAAATCCTCATTCAATTTTGTTATATAATCATGTACGACGATGTGACCATTTTGGGAGCATTGTCATTTAGAACTTTAGAATTATCCTTACTTGTTTGGAGCTTTTATGCTATTGGTTTGATTGTTAGCGCTCTGAGTCATTTTCTTTATGAAGGGAAGTCTTAGAATGGTAGATACCCCATGCCTACACGAGGAAGATATGTGGTAATTCTATCCCTATGGTCGGAGTAATTGCAACGTGTATGAAAAGCTACAAGGCCAAGGGATGAGAAGACCATCTCCTTCGTGTGTTGGCGTAGATTTTGTTCGCAACCATGTTGAAGATTTGAGAGTTTAATAGGAGAATTTGAGTCCAAAGTACAAAGCGGAAATTGCATACGTCAAGGAATAGCAGTGTAACGGTTGTATGTTTTCAATTGTGTGGGGTTATGATCTTGGCATACTCATGACAAACATTAAAGGAAACTCAAGCCCTATTCACATTTTTTTCGCCCGACTTTGTGGCTTCTCCTTGCTACCTTATCTTTAAAAGTTGAGCCTTTATTCTAACAGGAAAGTCACCTTTCTACGACCTTTATACTCATAGTTCAGAGAGGTGCCAAACAGTTTAAAAATGGG

Coding sequence (CDS)

ATGATGACGCTCAGAGAGATGGTGCATAACCCCTTCGACAGAAGTGTGAATGATGAAGACATAAAGGCACCCTTAACATCCTCACCGAGTTTGGTCATAGGATTGTGGTCGAGAAGCGTATGTTTTTGCGTGGATGAACAAAAAATCCTCATTCAATTTTGTTATATAATCATGTACGACGATGTGACCATTTTGGGAGCATTGTCATTTAGAACTTTAGAATTATCCTTACTTGTTTGGAGCTTTTATGCTATTGGTTTGATTGTTAGCGCTCTGAGTCATTTTCTTTATGAAGGGAAGTCTTAG

Protein sequence

MMTLREMVHNPFDRSVNDEDIKAPLTSSPSLVIGLWSRSVCFCVDEQKILIQFCYIIMYDDVTILGALSFRTLELSLLVWSFYAIGLIVSALSHFLYEGKS
Homology
[Close]
BLAST of CmaCh19G002600 vs. NCBI nr
Match: KAG6571683.1 (putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-17
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 11  PFDRSVNDEDIKAPLTSSPSLVIGLWSRSVCFCVDEQKILIQFCYIIMYDDVTIL 66
           PFDRSVNDEDIKA L SSPSLVIGL SRS+CFCVDE+KILIQFCYIIMYD VTIL
Sbjct: 359 PFDRSVNDEDIKAHLKSSPSLVIGLRSRSLCFCVDERKILIQFCYIIMYDYVTIL 413

The following BLAST results are available for this feature:
BLAST of CmaCh19G002600 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G002600 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G002600 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571683.14.3e-1789.09putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyro... [more]
BLAST of CmaCh19G002600 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G002600.1CmaCh19G002600.1mRNA