CmaCh19G002060 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G002060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr19: 1365933 .. 1367127 (+)
RNA-Seq ExpressionCmaCh19G002060
SyntenyCmaCh19G002060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTCTGGTATAAAGAAAATCATGGAAGCATGGACTTTTTACGGGGAACAAGATGCTGCTCTGTGCTCTTCTAGTTCGTTCATTTAAAAGCTTCATTTTTCTGCAGTTCATACTTAGAATGTAATGTGTTGACAGTGCTGTAACTAATTTTATTTTACAGAAATAGAAAGGAAGAAAATATATGCTTAAATTATGCGTCGTACGGTTTTAATTAGGCGACAAAAAGTACGATTTCATAGTATTTTTTAATTTTATAGTATTATTTTTAAAGTTTTAAGTTACAATTAGTAGAGTTATAACATTTCAGTTGACCCAGAGTTATTTTAAGGTTTATTTTTAAGAGTATAAATAATCATTCATGTTCTTGCTTTGGAAGTTACCTTCATACCCTTCAACTTAAAAGAATACTTTTATTGTTAGTACCATGTTTAAAAATATCGTGAAATTGTACTTTTAACAATCAATATATGGATAGAAACTGTCTATCTATATCTCATAGATTAAAATAATTGTATTTTTAACAATCAATATATGAATAGAAACCGTCTATCTACATCTTATAGATTAAAACTGAGTGAAATTGTACTCATGTAGCTGAAAAATATTAATGATTTACATAAAAAAAAAATTAATTTAGGAATATTTTTTGAATTTTTTAAAAGTTTAGTAATATTAAAATTTTAAAAAATTGATAATTTCGTGATGAAGTAAAAAGCTTAAGGATATTTTTATTAATTTAATAGAAGTAGATATACATTCAGTTATAAACGAAACCAATCTCTGCAAAAACTTGGAATTTCCATTTCATTTCTGCTTTCGATTCTTTATGGGAATTTTTTCTTTACATCAGAAATCTCCAGCGATCAGGAAATTTAGAACAACAAGTGATTGTAAAGCAGCCTAAGAAGCTCAGACTATAACGATCGATAAACAACAAAGCTTGAATTGAAAGCCAAATCCAGAAATCGGCCGGCGACTGAGAAACGCCTCTCGCGACGCCCTAACTTCAGGCTTTTGCGGCCTCCACCTGCGCCTTGGCCTTGCTGGCGGAAATCTGCTCGTACAGATCTCTGATCTTCAATCCGACGATGGTTTGGAAGAAGCCTGTGCCATTGTTGCTTCCAGGGAACTCCGAGTGCTTCAGCATCTGTTGAGTCACTTCGCCGTAGAATTTTGTCGACAAGTTGCTTAG

mRNA sequence

ATGCTGTCTGAAATCGGCCGGCGACTGAGAAACGCCTCTCGCGACGCCCTAACTTCAGGCTTTTGCGGCCTCCACCTGCGCCTTGGCCTTGCTGGCGGAAATCTGCTCGTACAGATCTCTGATCTTCAATCCGACGATGGTTTGGAAGAAGCCTGTGCCATTGTTGCTTCCAGGGAACTCCGAGTGCTTCAGCATCTGTTGAGTCACTTCGCCGTAGAATTTTGTCGACAAGTTGCTTAG

Coding sequence (CDS)

ATGCTGTCTGAAATCGGCCGGCGACTGAGAAACGCCTCTCGCGACGCCCTAACTTCAGGCTTTTGCGGCCTCCACCTGCGCCTTGGCCTTGCTGGCGGAAATCTGCTCGTACAGATCTCTGATCTTCAATCCGACGATGGTTTGGAAGAAGCCTGTGCCATTGTTGCTTCCAGGGAACTCCGAGTGCTTCAGCATCTGTTGAGTCACTTCGCCGTAGAATTTTGTCGACAAGTTGCTTAG

Protein sequence

MLSEIGRRLRNASRDALTSGFCGLHLRLGLAGGNLLVQISDLQSDDGLEEACAIVASRELRVLQHLLSHFAVEFCRQVA
Homology
[Close]
BLAST of CmaCh19G002060 vs. ExPASy TrEMBL
Match: A0A5A7PDE6 (Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_06245 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.2e-05
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 33  GNLLVQISDLQSDDGLEEACAIVASRELRVLQHLLSHFAVEFCRQVA 80
           G LL  +SDLQ D GLE+A  IVA+ ++R+LQHLLS+FA+EF R VA
Sbjct: 91  GLLLFDVSDLQPDYGLEKARPIVAAWKIRMLQHLLSNFAIEFGRDVA 137

[Close]
BLAST of CmaCh19G002060 vs. NCBI nr
Match: GER30297.1 (hypothetical protein STAS_06245 [Striga asiatica])

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 33  GNLLVQISDLQSDDGLEEACAIVASRELRVLQHLLSHFAVEFCRQVA 80
           G LL  +SDLQ D GLE+A  IVA+ ++R+LQHLLS+FA+EF R VA
Sbjct: 91  GLLLFDVSDLQPDYGLEKARPIVAAWKIRMLQHLLSNFAIEFGRDVA 137

The following BLAST results are available for this feature:
BLAST of CmaCh19G002060 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G002060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7PDE69.2e-0561.70Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_06245 PE=4 SV=1[more]
BLAST of CmaCh19G002060 vs. NCBI nr
Match NameE-valueIdentityDescription
GER30297.11.9e-0461.70hypothetical protein STAS_06245 [Striga asiatica][more]
BLAST of CmaCh19G002060 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G002060.1CmaCh19G002060.1mRNA