CmaCh19G001900 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G001900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr19: 1261177 .. 1261863 (+)
RNA-Seq Expression	CmaCh19G001900
Synteny	CmaCh19G001900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCAATTAGCCATAAATTCTAGATTCCTCTATAAATACAAGCAAACTAATTGCCATTGCTCCACAAACTCTCAAATCCGAGTTCATCTTGCGTCTTCATTTCAATTTCTCTCTCTCTCGCGCGCGCGCGCGCGCACTAATCCACGAGCACGATCAAGTCCTAACCGCCTCTGTGCGGACTTGAAGTTGAATGATCAAGTAAAGATTATTTCAAATCTTCAATCGCTTTTGATGAGGAGAGACGGAGATGAAGCGCCGATTTCGACTTCGCAGATCGATCGGAAACCAGAGCAGACTGCATCCGCGGCGGAGCTTGGCGAGAAGGAATTTCAACCTAAGTCGACCGGCGCTGGCTCTCCGCTTCACTGCGACAGCACCAAGGAGGAGCTCCGCCGTGCAGAAACTGAACCGCCGATAGTCGGCGATTCCAACCACCAGGTAAACAAACGCTACTGAGAATCGCAACTTAGAAGTGAAAAGAAAGAGGAAAATCTGATTTATTGCTTCTGCTATGCGATTAATCCTTCTTCTGGTTTGCGTGTGCTTGTTTGTTGATTATGCTTCTTCTTAGCGTTCTTTGAATTTCTTAAGCCATCGCTAGTAACAGAGATCTCCCTGGGCGTTGGAATTGGGATTCGGAATCGTAAACCATTCCCTTTCGGCGCGAACCTTAAGGAGTTTTAA

mRNA sequence

ATGGTCCAATTAGCCATAAATTCTAGATTCCTCTATAAATACAAGCAAACTAATTGCCATTGCTCCACAAACTCTCAAATCCGAGTTCATCTTGCGTCTTCATTTCAATTTCTCTCTCTCTCGCGCGCGCGCGCGCGCACTAATCCACGAGCACGATCAAGTCCTAACCGCCTCTGTGCGGACTTGAAGTTGAATGATCAAGTAAAGATTATTTCAAATCTTCAATCGCTTTTGATGAGGAGAGACGGAGATGAAGCGCCGATTTCGACTTCGCAGATCGATCGGAAACCAGAGCAGACTGCATCCGCGGCGGAGCTTGGCGAGAAGGAATTTCAACCTAAGTCGACCGGCGCTGGCTCTCCGCTTCACTGCGACAGCACCAAGGAGGAGCTCCGCCGTGCAGAAACTGAACCGCCGATAGTCGGCGATTCCAACCACCAGCCATCGCTAGTAACAGAGATCTCCCTGGGCGTTGGAATTGGGATTCGGAATCGTAAACCATTCCCTTTCGGCGCGAACCTTAAGGAGTTTTAA

Coding sequence (CDS)

ATGGTCCAATTAGCCATAAATTCTAGATTCCTCTATAAATACAAGCAAACTAATTGCCATTGCTCCACAAACTCTCAAATCCGAGTTCATCTTGCGTCTTCATTTCAATTTCTCTCTCTCTCGCGCGCGCGCGCGCGCACTAATCCACGAGCACGATCAAGTCCTAACCGCCTCTGTGCGGACTTGAAGTTGAATGATCAAGTAAAGATTATTTCAAATCTTCAATCGCTTTTGATGAGGAGAGACGGAGATGAAGCGCCGATTTCGACTTCGCAGATCGATCGGAAACCAGAGCAGACTGCATCCGCGGCGGAGCTTGGCGAGAAGGAATTTCAACCTAAGTCGACCGGCGCTGGCTCTCCGCTTCACTGCGACAGCACCAAGGAGGAGCTCCGCCGTGCAGAAACTGAACCGCCGATAGTCGGCGATTCCAACCACCAGCCATCGCTAGTAACAGAGATCTCCCTGGGCGTTGGAATTGGGATTCGGAATCGTAAACCATTCCCTTTCGGCGCGAACCTTAAGGAGTTTTAA

Protein sequence

MVQLAINSRFLYKYKQTNCHCSTNSQIRVHLASSFQFLSLSRARARTNPRARSSPNRLCADLKLNDQVKIISNLQSLLMRRDGDEAPISTSQIDRKPEQTASAAELGEKEFQPKSTGAGSPLHCDSTKEELRRAETEPPIVGDSNHQPSLVTEISLGVGIGIRNRKPFPFGANLKEF

Homology

[Close]

BLAST of CmaCh19G001900 vs. ExPASy TrEMBL
Match: A0A6J1HQ90 (probable polyamine transporter At1g31830 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466824 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.7e-30
Identity = 72/84 (85.71%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 79  MRRDGDEAPISTSQIDRKPEQTASAAELGEKEFQPKSTGAGSPLHCDSTKEELRRAETEP 138
           MRRDGDEAPISTSQIDRKPEQTASAAELGEKEFQPKSTGAGSPLHCDSTKEELRRAETEP
Sbjct: 1   MRRDGDEAPISTSQIDRKPEQTASAAELGEKEFQPKSTGAGSPLHCDSTKEELRRAETEP 60

Query: 139 PIVGDSNHQ-----PSLVTEISLG 158
           PIVGDSNHQ     P+  T +++G
Sbjct: 61  PIVGDSNHQKLRSSPARQTSVAMG 84

[Close]

BLAST of CmaCh19G001900 vs. ExPASy TrEMBL
Match: A0A6J1HJB1 (probable polyamine transporter At1g31830 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464079 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.9e-26
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 79  MRRDGDEAPISTSQIDRKPEQTASAAELGEKEFQPKSTGAGSPLHCDSTKEELRRAETEP 138
           M+RDGDEAPIS SQIDRKPEQT SAAELGEKEFQP ST AGSPLHCD TKEELRRAETEP
Sbjct: 1   MKRDGDEAPISASQIDRKPEQTTSAAELGEKEFQPNSTSAGSPLHCDGTKEELRRAETEP 60

Query: 139 PIVGDSNHQ-----PSLVTEISLG 158
           PIVGDS+HQ     P+  T +++G
Sbjct: 61  PIVGDSSHQKLRSSPARQTSVAMG 84

[Close]

BLAST of CmaCh19G001900 vs. ExPASy TrEMBL
Match: A0A6J1EYH3 (probable polyamine transporter At1g31830 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437371 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-10
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 79  MRRDG--DEAPISTSQIDRKPEQTASAA----ELGEKEFQPKS-TGAGSPLHCDSTKEEL 138
           M+RDG   EAP S   +D KPEQ A+AA    ELGEKE Q +S   A +P H DS KEEL
Sbjct: 1   MKRDGAEKEAPASALPVDPKPEQAATAAPPATELGEKEVQAQSAAAAAAPSHSDSAKEEL 60

Query: 139 RRAETEPPIVGDSNHQ---PSLVTEISLGVG 160
             AETEPPIVGDS+ Q    S   ++S+ +G
Sbjct: 61  SSAETEPPIVGDSDRQKFGTSPARQVSVAMG 91

[Close]

BLAST of CmaCh19G001900 vs. ExPASy TrEMBL
Match: A0A6J1JZ60 (probable polyamine transporter At1g31830 OS=Cucurbita maxima OX=3661 GN=LOC111491032 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-08
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 79  MRRDG--DEAPISTSQIDRKPEQTASAA----ELGEKEFQPKSTGAG-SPLHCDSTKEEL 138
           M+RDG   EAPIS   +D KPE+ A+AA    ELGEKE Q +S  A  +P H D  KEEL
Sbjct: 1   MKRDGAEKEAPISALPVDPKPEKAATAAPPATELGEKEVQAQSAAAATAPSHSDGAKEEL 60

Query: 139 RRAETEPPIVGDSNHQ---PSLVTEISLGVG 160
             AETE PIVGDS+ Q    S   ++S+ +G
Sbjct: 61  SSAETELPIVGDSDRQKFGTSPARQVSVAMG 91

[Close]

BLAST of CmaCh19G001900 vs. NCBI nr
Match: XP_022967227.1 (probable polyamine transporter At1g31830 isoform X1 [Cucurbita maxima])

HSP 1 Score: 141.4 bits (355), Expect = 7.7e-30
Identity = 72/84 (85.71%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 79  MRRDGDEAPISTSQIDRKPEQTASAAELGEKEFQPKSTGAGSPLHCDSTKEELRRAETEP 138
           MRRDGDEAPISTSQIDRKPEQTASAAELGEKEFQPKSTGAGSPLHCDSTKEELRRAETEP
Sbjct: 1   MRRDGDEAPISTSQIDRKPEQTASAAELGEKEFQPKSTGAGSPLHCDSTKEELRRAETEP 60

Query: 139 PIVGDSNHQ-----PSLVTEISLG 158
           PIVGDSNHQ     P+  T +++G
Sbjct: 61  PIVGDSNHQKLRSSPARQTSVAMG 84

[Close]

BLAST of CmaCh19G001900 vs. NCBI nr
Match: XP_022963923.1 (probable polyamine transporter At1g31830 isoform X1 [Cucurbita moschata])

HSP 1 Score: 129.0 bits (323), Expect = 4.0e-26
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 79  MRRDGDEAPISTSQIDRKPEQTASAAELGEKEFQPKSTGAGSPLHCDSTKEELRRAETEP 138
           M+RDGDEAPIS SQIDRKPEQT SAAELGEKEFQP ST AGSPLHCD TKEELRRAETEP
Sbjct: 1   MKRDGDEAPISASQIDRKPEQTTSAAELGEKEFQPNSTSAGSPLHCDGTKEELRRAETEP 60

Query: 139 PIVGDSNHQ-----PSLVTEISLG 158
           PIVGDS+HQ     P+  T +++G
Sbjct: 61  PIVGDSSHQKLRSSPARQTSVAMG 84

[Close]

BLAST of CmaCh19G001900 vs. NCBI nr
Match: KAG6571609.1 (hypothetical protein SDJN03_28337, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-25
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 79  MRRDGDEAPISTSQIDRKPEQTASAAELGEKEFQPKSTGAGSPLHCDSTKEELRRAETEP 138
           M+RDGDEAPIS SQIDRKPEQT SAAELGEKEFQP ST AGSPLHCD TKEELRRAETEP
Sbjct: 1   MKRDGDEAPISASQIDRKPEQTTSAAELGEKEFQPNSTSAGSPLHCDGTKEELRRAETEP 60

Query: 139 PIVGDSNHQ 148
           PIVGDS+HQ
Sbjct: 61  PIVGDSSHQ 69

[Close]

BLAST of CmaCh19G001900 vs. NCBI nr
Match: XP_022931075.1 (probable polyamine transporter At1g31830 isoform X1 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-09
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 79  MRRDG--DEAPISTSQIDRKPEQTASAA----ELGEKEFQPKS-TGAGSPLHCDSTKEEL 138
           M+RDG   EAP S   +D KPEQ A+AA    ELGEKE Q +S   A +P H DS KEEL
Sbjct: 1   MKRDGAEKEAPASALPVDPKPEQAATAAPPATELGEKEVQAQSAAAAAAPSHSDSAKEEL 60

Query: 139 RRAETEPPIVGDSNHQ---PSLVTEISLGVG 160
             AETEPPIVGDS+ Q    S   ++S+ +G
Sbjct: 61  SSAETEPPIVGDSDRQKFGTSPARQVSVAMG 91

[Close]

BLAST of CmaCh19G001900 vs. NCBI nr
Match: KAG6606291.1 (putative polyamine transporter, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-09
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 79  MRRDG--DEAPISTSQIDRKPEQTASAA----ELGEKEFQPKS-TGAGSPLHCDSTKEEL 138
           M+RDG   EAP+S   +D KPEQ A+AA    ELGEKE Q +S   A +P H D  KEEL
Sbjct: 1   MKRDGAEKEAPVSALPVDPKPEQAATAAPPATELGEKEVQAQSAAAAAAPSHSDDAKEEL 60

Query: 139 RRAETEPPIVGDSNHQ---PSLVTEISLGVG 160
             AETEPPIVGDS+ Q    S   ++S+ +G
Sbjct: 61  SSAETEPPIVGDSDRQKFSTSPARQVSVAMG 91

The following BLAST results are available for this feature:

BLAST of CmaCh19G001900 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G001900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQ90	3.7e-30	85.71	probable polyamine transporter At1g31830 isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1HJB1	1.9e-26	77.38	probable polyamine transporter At1g31830 isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1EYH3	9.6e-10	52.75	probable polyamine transporter At1g31830 isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1JZ60	3.1e-08	50.55	probable polyamine transporter At1g31830 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]

BLAST of CmaCh19G001900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967227.1	7.7e-30	85.71	probable polyamine transporter At1g31830 isoform X1 [Cucurbita maxima]	[more]
XP_022963923.1	4.0e-26	77.38	probable polyamine transporter At1g31830 isoform X1 [Cucurbita moschata]	[more]
KAG6571609.1	2.6e-25	89.86	hypothetical protein SDJN03_28337, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931075.1	2.0e-09	52.75	probable polyamine transporter At1g31830 isoform X1 [Cucurbita moschata]	[more]
KAG6606291.1	2.0e-09	51.65	putative polyamine transporter, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh19G001900 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G001900.1	CmaCh19G001900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902047	polyamine transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0015203	polyamine transmembrane transporter activity