CmaCh19G001780 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G001780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionGEM-like protein 2
LocationCma_Chr19: 1184888 .. 1188742 (-)
RNA-Seq ExpressionCmaCh19G001780
SyntenyCmaCh19G001780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACATATGAACAATTTCAGCATATCGGAATCGACGCAATCTACAGCATGAGCAATCCCCTTGACGCCAAAGACAACCCCTATGTTCAGTATTCCTCTGCCTCCGCATCCCCAAATGGAAAATGTTTGTTTTCTTCTTTTCTGCACTTAATGTGTTTGTAATAATTCCTCTGTGGATTCTCATGCTTTTTTCTTTTTTGCATATGTCCAACAGATAAGATGTGGGAAGCGTTGGATCGGTGCGGGAAGACGTTTGAAGATTGTTCTAGGATGATTGAGGCTGTAGCAGATAGCCTCTGGAATCACTGTCAGTTCTTTCCTCAATTCAAGTTAGTTTCCTGAATGTGTTGTTTTCTAATTAGAAACTCATTTGCTGCTTCATCTTGATCTGAAACAAGCTTAGTTCTCTCCTGTTTAATATGATTGCTCAAGCTTTCAATGAATTGGTTCCAAATAATTAAAAGAGTTTCTGTCTGTAAAGAAATGGTTTCAGGTTTGTCATCTCTTGGTAATTTAATTGGTAGAGCTTTTAATGATTGGTTTCAAACGATTGAAACTGATTCTTTTTTGTAAAGAAATGGTTTCAGGTTTCCCTTAAAGCAGTCATGATTTTCTCTGTCCCTTTGATCCTTTTCTAGAATAATGAAATTTGGACGCTGGAATTGTATTTCTGTTTGATGTCTTCTCGGGATTGTTAGCTTCTAATCTGTTAGACAATATATGTTTTTCCCAACAGTGAAACTTGGTTCTAGTGTCACTGATACGGCAATGACTAGGCTTCATCTTGGGACGAAGTTACTTACAAAAGGTGGTATTAGAAATTACGGATCTTCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGGTTTGCTTTGGACTTCCTCAAAAGGCCTCGTACTAATGGAGATGTATTCCTTACTTGCAAACCTATAATCATTCCCTAAATTAGCCAACATGAGACTCCATCCCACAATCCTTTGCCTGCTATCTGTCCTGTCCATTTTCTCTGGGCCTGTAAATGGGACTCCATTCATATCCACAAAAAGAGTGGGCTTTTGTAGTGAGTTTCCTCTTTTTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGGTATGTCTGGCCCATTGTTCTTGAAGATATTTTGTTCTGAGGGATCTGAAATATGATTTTAGGATATATAACTTAGCGTAAGCGATTCACAGTGTTTTTCTTGGCCTGTTTGAAACTAATACAGCCTTAGATATATTGAAGAAAAGACAAAATAGAACAGAAAGAGTACTCATATGTTTGAGAGGTCTCCACAAAAAGATTCTACTGGCTGAACTCTCTCTGTTCACGTCCCCACTGACATATACTTCTCTTATCTAACATGTGGTGAGGGCCCTGCTGCCTTCACTTTCATAGATACTCTATCTCAGTTACAGCTGACCAATTCTCCCTCCATCTAACTTCCATTTGCATTTCCCGCCCTTTATTCGATACGGATAGGTGGCTTCTTGAATGTAGGGAAAATTTCTAGTACTACCGTACCTCCAATCATTTGTTTGTCATAAAAAAAATATAATTATAAATGGCGTCTATGAAATGAAATCGTATGTCATTTAGTAACGTGTCAAATGTTGAATGGAAGGAGTATGTATTTGTAACAGTCCAAACCCACCGCTAACAAATATTGTTCTCTTTGGGCTTTTCCTTTCAAGTTTCCCTTCAAGGTTTTTAAAACGCATCTATTAGGGAGAAGTTTCCACACCTTCATCACAATCCACCCCCTTAGGGCACACCGGCCAATGTCTGACTTTGATACCATTTGTAACAGCTCAATCTCACCGCTAGCAGATATTGTCCTCTTTGGGTTTTTCCTTTCGAGTTTCCCTTCAAAGTTTTTAAAACGTGTCTATTAAGGAGAGGTTTCCGCACCCTCATCACAATCCACCTCTGATATCATTTGTAACACCTCAAGCCCACCATTAGTAAATATTGTCCTCTTTGGGCTTTCTCTTTTGGGCTTCCCCTCAAGGCTTTTAAAACGTGTTTGCTAGGAAGAGATTTTCACACCCCTTATAAAGAATGTTTTGTTCCCCCGTCGAATCGATATGGGATCTTACAGGACTACCATACTACTCAAAAAAATTTCATGCATTAATTACCCTGCTTTTTCTCTTAGTCTTCGGCAAAGAGATCAGAACAAGAAGAAGAGTTATCCACTGGTTGGTAGCCAAGTTGTCTATACAATTATTCTCAGAACTTGCTTTAGTATGATTATGTTTAGAATTTTAAGCATGGTGGAACTGTAGCAGCTAGGGAAATAATTATGAAGTTCTGCAAAACAGTTTGATTTTCCTTGTTTTTTCTTATTGTGATAGAAATAATCAAAGTTCAAATCCATAACTATAGAAAGATACATCCATAAGAACAAAACTTAAATTACATAAGATAAATAGAACTAGCTAGATTTATAGTTTAGTACTGATTTGAAACCCTGTGAGTAGCAAAGTGATGAGTTCATAATCTCTCAACTGTATAACTCATACTAATTTAGGCGACGCTCACTCACTGTTAGGAGAGGATTATGAGGCTGAAAAAGGATAGTGTATCAGGGAAATGTGTTCATCCTTGTTTGGTCCCATTATTGCACATCCATGCATAGAACTAACTCAGAATTCATGCAACTATACCCAACTGTGATCTTGAAAACTATGCTTGTGTTAACTACTTGATCTTGCACTTTATCCCCTTCTCAAATGATTGGTATTTGAGTAGAACCCATCACCGGATGAGTTTCGTGAGTTTCTTGTCATTTTATCTATCTTTTTCGCTCAAGTTTTCAACTAGGGATCTTCTGTTAATGTCTTTAGTTGGGTTCCTTTTCATGACCGTGATGAATATGTTGGTGGTGATAGCGGTTGATCAGTTGGGCAAATCAACCCTTCTTCAAACCTTATGGTCCCCTCACAAAAATACATCCAAATAATCACGAGGGACTCTCATGAATTCTGGTTCATGGGATTCATATCATAAACAAGGCTGTCAAGACTTTAACCACTCGGAGGAAGCCATAATGTAACAACTCAAACCCCGCTTTGACTCGTTACCTATCGCCGTCAGTATTACGGTTTTAAAATGCGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTACGTTCCCTTTTCCAACCAATAAGGGATCTCACAATCCACCCCTTGAGGGCCTAGCTTCCTCGTTAGCACACCGCCCGGTATTTGGCTATGATACCATTTGTAACAGCTCAAGTCCACCGCTAGTGAATATTGTTCGTTTTGGCTCGTTACATATCGTTGTCAGCCTCACGGTTTTAAAAGTGTCTGCTAGGGAGAGATTTCCACACCCTTATAATGAATGTTTCGTTCTCTTCTCTAATCGATATAGGATCTCACACATATGCAACCGTTTCCTCTCACTATCTCTATGTTTTGGATTTTAAAATAGCAATGCCTCATTCCAATCACGGGATACATATTCAAGGACATTTACGGTTTCTTTCTCATACATCTGACCTGTAACGGTGCAAATAGCTTTATAAACTAAAGTTTATATCTTACACTTATGAAAACTAAGCAACCTATGCTTTGACTTGAGATTATATTATTGATTACTTAGAAAGTTGCGAAGAAATTCTAGTGGAGAGGTCTTTATGATCTTTATTTCACTTGTTTTTGGCATCTTCCAAAGCCATATTCATTTGCTATGTCCTAACTTTTAGGGAATATCAATACATGTGAATAAGAATTAGATGCTTGAATTTCACTTTAGCGCTCTTTTTTTAGGCCTTTTTGCAGAACTGTTAG

mRNA sequence

ATGGCTACATATGAACAATTTCAGCATATCGGAATCGACGCAATCTACAGCATGAGCAATCCCCTTGACGCCAAAGACAACCCCTATGTTCAGTATTCCTCTGCCTCCGCATCCCCAAATGGAAAATATAAGATGTGGGAAGCGTTGGATCGGTGCGGGAAGACGTTTGAAGATTGTTCTAGGATGATTGAGGCTGTAGCAGATAGCCTCTGGAATCACTGTCAGTTCTTTCCTCAATTCAATGAGTTTCCTCTTTTTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGAACTGTTAG

Coding sequence (CDS)

ATGGCTACATATGAACAATTTCAGCATATCGGAATCGACGCAATCTACAGCATGAGCAATCCCCTTGACGCCAAAGACAACCCCTATGTTCAGTATTCCTCTGCCTCCGCATCCCCAAATGGAAAATATAAGATGTGGGAAGCGTTGGATCGGTGCGGGAAGACGTTTGAAGATTGTTCTAGGATGATTGAGGCTGTAGCAGATAGCCTCTGGAATCACTGTCAGTTCTTTCCTCAATTCAATGAGTTTCCTCTTTTTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGAACTGTTAG

Protein sequence

MATYEQFQHIGIDAIYSMSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNHCQFFPQFNEFPLFYYPSPGQPQWILYKNC
Homology
[Close]
BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match: A0A6J1HQK3 (GEM-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111466898 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 18 MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH 74
          MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH
Sbjct: 1  MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH 56

[Close]
BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match: A0A1S3CCD7 (GEM-like protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.1e-21
Identity = 60/154 (38.96%), Postives = 71/154 (46.10%), Query Frame = 0 

Query: 12  IDAIYSMSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLW 71
           +D I++MSN LD+++N YVQ SSAS SPNGKYKMWE LDRCGK FEDCS+ +EA AD +W
Sbjct: 1   MDTIFTMSNCLDSQENHYVQCSSASTSPNGKYKMWEVLDRCGKKFEDCSKTVEAAADGVW 60

Query: 72  NHCQFFPQFNE------------------------------------------------- 101
           NH +      +                                                 
Sbjct: 61  NHMKLSSSVTDAAMARLHQGTKLLTEGGYKKVFQQTFGFVDGDKYLDCFACYLSTSSGPV 120

[Close]
BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match: A0A6J1E018 (GEM-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111026148 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.0e-16
Identity = 56/148 (37.84%), Postives = 64/148 (43.24%), Query Frame = 0 

Query: 18  MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNHCQFF 77
           MSN LD ++NPYVQ+SSASASPNGK KMWE L RCGK  EDCSR +E  ADS+ +H +  
Sbjct: 1   MSNRLDDRENPYVQFSSASASPNGKNKMWEVLGRCGKRLEDCSRKVEVAADSVRHHLRLS 60

Query: 78  PQF--------------------------------------------------------- 101
           P                                                           
Sbjct: 61  PSVTDAAMARLHQGTKLLTEGGYEKVFQQTFGFIHGDKYVDSFACYLSTSSGPVNGTLYI 120

[Close]
BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match: A0A1S3CCH4 (GEM-like protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.7e-15
Identity = 59/184 (32.07%), Postives = 70/184 (38.04%), Query Frame = 0 

Query: 12  IDAIYSMSNPLDAKDNPYVQYSSASASPNGKY---------------------------- 71
           +D I++MSN LD+++N YVQ SSAS SPNGK                             
Sbjct: 1   MDTIFTMSNCLDSQENHYVQCSSASTSPNGKCLLFSTLNVFVKTPQWYLLPFFFFFVICP 60

Query: 72  --KMWEALDRCGKTFEDCSRMIEAVADSLWNHCQFFPQFNE------------------- 101
             KMWE LDRCGK FEDCS+ +EA AD +WNH +      +                   
Sbjct: 61  IDKMWEVLDRCGKKFEDCSKTVEAAADGVWNHMKLSSSVTDAAMARLHQGTKLLTEGGYK 120

[Close]
BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match: A0A1S3CCV4 (GEM-like protein 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-09
Identity = 40/123 (32.52%), Postives = 45/123 (36.59%), Query Frame = 0 

Query: 43  YKMWEALDRCGKTFEDCSRMIEAVADSLWNHCQFFPQFNE-------------------- 101
           YKMWE LDRCGK FEDCS+ +EA AD +WNH +      +                    
Sbjct: 8   YKMWEVLDRCGKKFEDCSKTVEAAADGVWNHMKLSSSVTDAAMARLHQGTKLLTEGGYKK 67

[Close]
BLAST of CmaCh19G001780 vs. NCBI nr
Match: XP_022967352.1 (GEM-like protein 2, partial [Cucurbita maxima])

HSP 1 Score: 124.0 bits (310), Expect = 7.4e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 18 MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH 74
          MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH
Sbjct: 1  MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH 56

[Close]
BLAST of CmaCh19G001780 vs. NCBI nr
Match: XP_008460398.1 (PREDICTED: GEM-like protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 60/154 (38.96%), Postives = 71/154 (46.10%), Query Frame = 0 

Query: 12  IDAIYSMSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLW 71
           +D I++MSN LD+++N YVQ SSAS SPNGKYKMWE LDRCGK FEDCS+ +EA AD +W
Sbjct: 1   MDTIFTMSNCLDSQENHYVQCSSASTSPNGKYKMWEVLDRCGKKFEDCSKTVEAAADGVW 60

Query: 72  NHCQFFPQFNE------------------------------------------------- 101
           NH +      +                                                 
Sbjct: 61  NHMKLSSSVTDAAMARLHQGTKLLTEGGYKKVFQQTFGFVDGDKYLDCFACYLSTSSGPV 120

[Close]
BLAST of CmaCh19G001780 vs. NCBI nr
Match: XP_038887655.1 (GEM-like protein 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 61/148 (41.22%), Postives = 68/148 (45.95%), Query Frame = 0 

Query: 18  MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNHCQ-- 77
           M N LD KDNPYV YSSAS SPNGKYKM E LDRCGK F DCS+M+EA AD +WNH +  
Sbjct: 1   MINHLDTKDNPYVHYSSASTSPNGKYKMSEVLDRCGKRFADCSKMVEAAADGIWNHLKLS 60

Query: 78  -----------------------------------------FFPQF-------------- 101
                                                    FF  +              
Sbjct: 61  SSVTDAAMARLHQGTKLVTEGGYKKVFQQTFGFVDGDKYLDFFACYLSTSSGPVNGTLYI 120

[Close]
BLAST of CmaCh19G001780 vs. NCBI nr
Match: XP_038887653.1 (GEM-like protein 2 isoform X1 [Benincasa hispida] >XP_038887654.1 GEM-like protein 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-17
Identity = 60/149 (40.27%), Postives = 67/149 (44.97%), Query Frame = 0 

Query: 18  MSNPLDAKDNPYVQYSSASASPNGKY-KMWEALDRCGKTFEDCSRMIEAVADSLWNHCQ- 77
           M N LD KDNPYV YSSAS SPNGK  KM E LDRCGK F DCS+M+EA AD +WNH + 
Sbjct: 1   MINHLDTKDNPYVHYSSASTSPNGKSDKMSEVLDRCGKRFADCSKMVEAAADGIWNHLKL 60

Query: 78  ------------------------------------------FFPQF------------- 101
                                                     FF  +             
Sbjct: 61  SSSVTDAAMARLHQGTKLVTEGGYKKVFQQTFGFVDGDKYLDFFACYLSTSSGPVNGTLY 120

[Close]
BLAST of CmaCh19G001780 vs. NCBI nr
Match: XP_022159858.1 (GEM-like protein 2 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 6.2e-16
Identity = 56/148 (37.84%), Postives = 64/148 (43.24%), Query Frame = 0 

Query: 18  MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNHCQFF 77
           MSN LD ++NPYVQ+SSASASPNGK KMWE L RCGK  EDCSR +E  ADS+ +H +  
Sbjct: 1   MSNRLDDRENPYVQFSSASASPNGKNKMWEVLGRCGKRLEDCSRKVEVAADSVRHHLRLS 60

Query: 78  PQF--------------------------------------------------------- 101
           P                                                           
Sbjct: 61  PSVTDAAMARLHQGTKLLTEGGYEKVFQQTFGFIHGDKYVDSFACYLSTSSGPVNGTLYI 120

The following BLAST results are available for this feature:
BLAST of CmaCh19G001780 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HQK33.6e-25100.00GEM-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111466898 PE=4 SV=1[more]
A0A1S3CCD79.1e-2138.96GEM-like protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1[more]
A0A6J1E0183.0e-1637.84GEM-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111026148 PE=3 SV=1[more]
A0A1S3CCH45.7e-1532.07GEM-like protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1[more]
A0A1S3CCV44.7e-0932.52GEM-like protein 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1[more]
BLAST of CmaCh19G001780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022967352.17.4e-25100.00GEM-like protein 2, partial [Cucurbita maxima][more]
XP_008460398.11.9e-2038.96PREDICTED: GEM-like protein 2 isoform X2 [Cucumis melo][more]
XP_038887655.11.6e-1941.22GEM-like protein 2 isoform X2 [Benincasa hispida][more]
XP_038887653.14.3e-1740.27GEM-like protein 2 isoform X1 [Benincasa hispida] >XP_038887654.1 GEM-like prote... [more]
XP_022159858.16.2e-1637.84GEM-like protein 2 [Momordica charantia][more]
BLAST of CmaCh19G001780 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G001780.1CmaCh19G001780.1mRNA