CmaCh19G001560 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G001560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Poly(A)-specific ribonuclease
Location	Cma_Chr19: 1023305 .. 1024494 (+)
RNA-Seq Expression	CmaCh19G001560
Synteny	CmaCh19G001560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTTATGACATCGCATGAAGTTTGTCAACATAATATGTCTACGTGTGTCCATCGCTATCTTCGACCCATATTTGCCAAATGGATTCAATCTCTTCATGGTAAAACATCATATGGGTTCGATGTACTTTTATCTTCAACAAGGATTCAATCTGTTCATGGTAAAACATCATATGGGTTCGATGTACTTTTATCCTCAACAAGCGGCCCAGCCACCACTGCTACACATAAATTAGGAACAGTCATCAACCTCAAACACATGGCTCGGTATGCGACTATCTACTCAATGACAACCTAAGCTTAAAAAACTATCGAAGTTGTTCCAAGTTAACCGCGTTGGTATTGCCCACTTTGTTGGATCTGATAGTCTGCAGAGATAAAAACCTTTCTCAATCACAATCTATCGAAGAGATAGAACTTATGAAATACTATTTATCAGAATTCCCAATTGTGTCGGTGGATATGGAGTTTTAAGGTAAAAATTAAACTTGAAGGTGGCTAGGAGGGGTGAATTTTTTAGTTTTTATTTACTCAATTTTGTATATATATGAATTCTATAAATGCCTCCAATTTAACGTGAATCGACTCAGCATTCTCGAGTTAGGACTCACACTTACCAATGAGAATGAAAAATAGGAAGGACGTAAAAGTTTAATTTTCAAGATTTTGATAAAATTAGTAATATCGAAGGTGTTTATTCACTCGATCCATTAAAAAAAAGAAGGGATTTAATTTCAATAGATTGAGGAGTTATCTCCCCAATAATTTGGTAGAAAGGGTAGAATACGGAGATGAATAACATTTCATGGATGGTATGACATCACCTATTTAATGAAGTTTACAAACATAATAATGTGCATGCCTACGTCCATGTCTATCTTCGCCACCACTGCTACACATCTATTAGGAACAGTCACCGACCTCAAACATATTGCTCGGTACTCCGACTACCTACTTAATGACAACCTAGGCTTAAAAAATCTATTAGGAACAGTCACTGACCTCAAACATATTGCTCGGTACTCCGACTACCTGCTCAATGACAACCTAGGCTTAAAAAAACTAGCGAAGCTGCTCCAAGTTAATAGCATTGGTACTGCCCACTTTACTGGGTCTGACAGTTTGCTTGCCCCATCAGTTTATGTCAAGATGAAGGTAATTCTCAAGGTTGAACCAGAGATATACTAA

mRNA sequence

ATGGACTTTATGACATCGCATGAAGTTTGTCAACATAATATGTCTACGTGTGTCCATCGCTATCTTCGACCCATATTTGCCAAATGGATTCAATCTCTTCATGGTAAAACATCATATGGGTTCGATGTACTTTTATCTTCAACAAGGATTCAATCTGTTCATGGAACAGTCACTGACCTCAAACATATTGCTCGGTACTCCGACTACCTGCTCAATGACAACCTAGGCTTAAAAAAACTAGCGAAGCTGCTCCAAGTTAATAGCATTGGTACTGCCCACTTTACTGGGTCTGACAGTTTGCTTGCCCCATCAGTTTATGTCAAGATGAAGGTAATTCTCAAGGTTGAACCAGAGATATACTAA

Coding sequence (CDS)

ATGGACTTTATGACATCGCATGAAGTTTGTCAACATAATATGTCTACGTGTGTCCATCGCTATCTTCGACCCATATTTGCCAAATGGATTCAATCTCTTCATGGTAAAACATCATATGGGTTCGATGTACTTTTATCTTCAACAAGGATTCAATCTGTTCATGGAACAGTCACTGACCTCAAACATATTGCTCGGTACTCCGACTACCTGCTCAATGACAACCTAGGCTTAAAAAAACTAGCGAAGCTGCTCCAAGTTAATAGCATTGGTACTGCCCACTTTACTGGGTCTGACAGTTTGCTTGCCCCATCAGTTTATGTCAAGATGAAGGTAATTCTCAAGGTTGAACCAGAGATATACTAA

Protein sequence

MDFMTSHEVCQHNMSTCVHRYLRPIFAKWIQSLHGKTSYGFDVLLSSTRIQSVHGTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLAPSVYVKMKVILKVEPEIY

Homology

[Close]

BLAST of CmaCh19G001560 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-07
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 47  STRIQSVHGTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLAPSVY 106
           +T +  V G V D K +A + +  L ++LGL KLA+LLQ+  +G AH  GSDSL+   V+
Sbjct: 176 ATEVVKVFGQVYDTKVMAGFCEG-LGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVF 235

Query: 107 VKMK 111
           +K+K
Sbjct: 236 IKLK 238

[Close]

BLAST of CmaCh19G001560 vs. ExPASy Swiss-Prot
Match: Q49CB2 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cuscuta sandwichiana OX=197374 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 22  LRPIFAKWIQSLHGKTSYGFDVLLSSTRIQSVH 55
           + PIFA+WIQS HGKTSYGFDVLLSST   +V+
Sbjct: 455 IEPIFAQWIQSAHGKTSYGFDVLLSSTNGPAVN 487

[Close]

BLAST of CmaCh19G001560 vs. ExPASy Swiss-Prot
Match: A4QJB4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium OX=434059 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 22  LRPIFAKWIQSLHGKTSYGFDVLLSST 49
           + PIFA+WIQS HGKTSYGFDVLLSST
Sbjct: 455 IEPIFAQWIQSAHGKTSYGFDVLLSST 481

[Close]

BLAST of CmaCh19G001560 vs. ExPASy Swiss-Prot
Match: A4QJJ8 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflorum OX=72657 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 22  LRPIFAKWIQSLHGKTSYGFDVLLSST 49
           + PIFA+WIQS HGKTSYGFDVLLSST
Sbjct: 455 IEPIFAQWIQSAHGKTSYGFDVLLSST 481

[Close]

BLAST of CmaCh19G001560 vs. ExPASy Swiss-Prot
Match: Q70Y04 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Amborella trichopoda OX=13333 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 22  LRPIFAKWIQSLHGKTSYGFDVLLSST 49
           + PIFA+WIQS HGKTSYGFDVLLSST
Sbjct: 455 IEPIFAQWIQSAHGKTSYGFDVLLSST 481

[Close]

BLAST of CmaCh19G001560 vs. ExPASy TrEMBL
Match: A0A6J1HSR3 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467090 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 45  LSSTRIQSVH--GTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLA 104
           +S+  I + H  GTVTDLKH+ARYSDYLLN NLGLKKLAK+LQVN IGTAHF GSDSLL 
Sbjct: 178 MSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIGTAHFAGSDSLLT 237

Query: 105 PSVYVKMKVILKVEPEIY 121
            SVY KM+VI+KV+P+I+
Sbjct: 238 ASVYAKMRVIMKVDPKIH 255

[Close]

BLAST of CmaCh19G001560 vs. ExPASy TrEMBL
Match: A0A6J1HRD6 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467091 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 45  LSSTRIQSVH--GTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLA 104
           +S+  I + H  GTVTDLKH+ARYSDYLLN NLGLKKLAK+LQVN IGTAHF GSDSLL 
Sbjct: 178 MSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIGTAHFAGSDSLLT 237

Query: 105 PSVYVKMKVILKVEPEIY 121
            SVY KM+VI+KV+P+I+
Sbjct: 238 ASVYAKMRVIMKVDPKIH 255

[Close]

BLAST of CmaCh19G001560 vs. ExPASy TrEMBL
Match: A0A6J1ESM7 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111435626 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.7e-21
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 55  GTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLAPSVYVKMKVILK 114
           GTVTDLKH+ARYSDYL N NLGLKKLAKLLQ+N +GTAHF GSDSLL  SVY KMKVI+K
Sbjct: 190 GTVTDLKHMARYSDYLFNGNLGLKKLAKLLQINRVGTAHFAGSDSLLTASVYAKMKVIMK 249

Query: 115 VEPEIY 121
           VEP+I+
Sbjct: 250 VEPKIH 255

[Close]

BLAST of CmaCh19G001560 vs. ExPASy TrEMBL
Match: A0A6J1IIN1 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111474351 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.8e-21
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 45  LSSTRIQSVH--GTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLA 104
           +S   I + H  GTVTDLKH+ARYSDYLLN NLGLKKLAK+LQVN IGTAHF GSDSLL 
Sbjct: 178 MSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIGTAHFAGSDSLLT 237

Query: 105 PSVYVKMKVILKVEPEIY 121
            SVY KM+VI+KV+P+I+
Sbjct: 238 ASVYAKMRVIMKVDPKIH 255

[Close]

BLAST of CmaCh19G001560 vs. ExPASy TrEMBL
Match: A0A6J1HXB4 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467089 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.3e-21
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 45  LSSTRIQSVH--GTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLA 104
           +S+  I + H  GTVTDLKH+ARYSDYLLN NLGLKKLAK+LQVN IGTAHF GSDS L 
Sbjct: 178 MSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIGTAHFAGSDSFLT 237

Query: 105 PSVYVKMKVILKVEPEIY 121
            SVY KM+VI+KV+P+I+
Sbjct: 238 ASVYAKMRVIMKVDPKIH 255

[Close]

BLAST of CmaCh19G001560 vs. NCBI nr
Match: XP_022967647.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima])

HSP 1 Score: 111.7 bits (278), Expect = 4.4e-21
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 45  LSSTRIQSVH--GTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLA 104
           +S+  I + H  GTVTDLKH+ARYSDYLLN NLGLKKLAK+LQVN IGTAHF GSDSLL 
Sbjct: 178 MSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIGTAHFAGSDSLLT 237

Query: 105 PSVYVKMKVILKVEPEIY 121
            SVY KM+VI+KV+P+I+
Sbjct: 238 ASVYAKMRVIMKVDPKIH 255

[Close]

BLAST of CmaCh19G001560 vs. NCBI nr
Match: XP_022967646.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima])

HSP 1 Score: 111.7 bits (278), Expect = 4.4e-21
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 45  LSSTRIQSVH--GTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLA 104
           +S+  I + H  GTVTDLKH+ARYSDYLLN NLGLKKLAK+LQVN IGTAHF GSDSLL 
Sbjct: 178 MSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIGTAHFAGSDSLLT 237

Query: 105 PSVYVKMKVILKVEPEIY 121
            SVY KM+VI+KV+P+I+
Sbjct: 238 ASVYAKMRVIMKVDPKIH 255

[Close]

BLAST of CmaCh19G001560 vs. NCBI nr
Match: XP_022928830.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 110.9 bits (276), Expect = 7.6e-21
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 55  GTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLAPSVYVKMKVILK 114
           GTVTDLKH+ARYSDYL N NLGLKKLAKLLQ+N +GTAHF GSDSLL  SVY KMKVI+K
Sbjct: 190 GTVTDLKHMARYSDYLFNGNLGLKKLAKLLQINRVGTAHFAGSDSLLTASVYAKMKVIMK 249

Query: 115 VEPEIY 121
           VEP+I+
Sbjct: 250 VEPKIH 255

[Close]

BLAST of CmaCh19G001560 vs. NCBI nr
Match: XP_022975238.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-21
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 45  LSSTRIQSVH--GTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLA 104
           +S   I + H  GTVTDLKH+ARYSDYLLN NLGLKKLAK+LQVN IGTAHF GSDSLL 
Sbjct: 178 MSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIGTAHFAGSDSLLT 237

Query: 105 PSVYVKMKVILKVEPEIY 121
            SVY KM+VI+KV+P+I+
Sbjct: 238 ASVYAKMRVIMKVDPKIH 255

[Close]

BLAST of CmaCh19G001560 vs. NCBI nr
Match: XP_022967644.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima])

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-20
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 45  LSSTRIQSVH--GTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLA 104
           +S+  I + H  GTVTDLKH+ARYSDYLLN NLGLKKLAK+LQVN IGTAHF GSDS L 
Sbjct: 178 MSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIGTAHFAGSDSFLT 237

Query: 105 PSVYVKMKVILKVEPEIY 121
            SVY KM+VI+KV+P+I+
Sbjct: 238 ASVYAKMRVIMKVDPKIH 255

[Close]

BLAST of CmaCh19G001560 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-08
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 47  STRIQSVHGTVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLAPSVY 106
           +T +  V G V D K +A + +  L ++LGL KLA+LLQ+  +G AH  GSDSL+   V+
Sbjct: 176 ATEVVKVFGQVYDTKVMAGFCEG-LGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVF 235

Query: 107 VKMK 111
           +K+K
Sbjct: 236 IKLK 238

[Close]

BLAST of CmaCh19G001560 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 22  LRPIFAKWIQSLHGKTSYGFDVLLSST 49
           + PIFA+WIQS HGKTSYGFDVLLSST
Sbjct: 455 IEPIFAQWIQSAHGKTSYGFDVLLSST 481

[Close]

BLAST of CmaCh19G001560 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.1e-05
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 56  TVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLAPSVYVKMKVILKV 115
           TV D+KH+ ++ + L   + GL KLA+LL+V  +G  H  GSDSLL    + K+K    V
Sbjct: 196 TVYDIKHLMKFCNSL---HGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFV 254

Query: 116 EP 118
            P
Sbjct: 256 GP 254

[Close]

BLAST of CmaCh19G001560 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.1e-05
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 56  TVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLAPSVYVKMKVILKV 115
           TV D+KH+ ++ + L   + GL KLA+LL+V  +G  H  GSDSLL    + K+K    V
Sbjct: 196 TVYDIKHLMKFCNSL---HGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFV 254

Query: 116 EP 118
            P
Sbjct: 256 GP 254

[Close]

BLAST of CmaCh19G001560 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.1e-05
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 56  TVTDLKHIARYSDYLLNDNLGLKKLAKLLQVNSIGTAHFTGSDSLLAPSVYVKMKVILKV 115
           TV D+KH+ ++ + L   + GL KLA+LL+V  +G  H  GSDSLL    + K+K    V
Sbjct: 196 TVYDIKHLMKFCNSL---HGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFV 254

Query: 116 EP 118
            P
Sbjct: 256 GP 254

The following BLAST results are available for this feature:

BLAST of CmaCh19G001560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	6.5e-07	43.75	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q49CB2	1.4e-06	72.73	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cuscuta sandwichiana OX=197374...	[more]
A4QJB4	1.9e-06	85.19	Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium OX=4340...	[more]
A4QJJ8	1.9e-06	85.19	Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflorum OX=726...	[more]
Q70Y04	1.9e-06	85.19	Photosystem I P700 chlorophyll a apoprotein A2 OS=Amborella trichopoda OX=13333 ...	[more]

BLAST of CmaCh19G001560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HSR3	2.2e-21	71.79	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467090 PE=3 S...	[more]
A0A6J1HRD6	2.2e-21	71.79	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467091 PE=3 S...	[more]
A0A6J1ESM7	3.7e-21	80.30	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111435626 PE=3...	[more]
A0A6J1IIN1	4.8e-21	71.79	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111474351 PE=3 S...	[more]
A0A6J1HXB4	6.3e-21	70.51	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467089 PE=3 S...	[more]

BLAST of CmaCh19G001560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967647.1	4.4e-21	71.79	putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]	[more]
XP_022967646.1	4.4e-21	71.79	putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]	[more]
XP_022928830.1	7.6e-21	80.30	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]
XP_022975238.1	9.9e-21	71.79	putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]	[more]
XP_022967644.1	1.3e-20	70.51	putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]	[more]

BLAST of CmaCh19G001560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	4.6e-08	43.75	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
ATCG00340.1	1.3e-07	85.19	Photosystem I, PsaA/PsaB protein	[more]
AT1G80780.1	2.1e-05	41.94	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	2.1e-05	41.94	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	2.1e-05	41.94	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..119 e-value: 1.4E-9 score: 39.4
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 48..115
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 48..115
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 51..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G001560.1	CmaCh19G001560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity