CmaCh19G001280 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G001280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr19: 759860 .. 760867 (+)
RNA-Seq ExpressionCmaCh19G001280
SyntenyCmaCh19G001280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTCAGCCCACTCCATTAACTCTATAACTTCTGTCGAAATGTACTTCACCCAATCCAAGAATCTTAATTCAAAATAGAAGCACCATTGAGCTTGGTTCCATGCCTCCTTTTAAATTTCTTCTGCAGGTTTGACGGCCAAAAATGGGGGAAAACAATACCAATGCGAGATTTGTTGTTTTCTTCAAGTGAAACAATTATTATGGTACGCAAATTATCCATTCTTGGTAAATTAGTCTTTACGTCTGTGCTTCGAAGTATAATGACTATATTCCCTTTAGCTTTACAAACCTAAATATCGTTTCTAGATTCCACTATTCAGACGTGGTTAGAGCTTTTTATGTCTACCCTTCTCAATTTCGAAATAGGAGTATTTAGTTGGTTTAATTAGAAATATCGTAATGAGGATTCCTTCCAGCTTTAACTAGTTTATACCACTGACTTGAGCATAGTTTAATCTCTCACTTGGAAGTAAAGTTCGTTGGTGCGGTAAAATCATTTACTGCTGGGTCAATATTTTAATAGATAGCAAAGAAATATTTACTAAGTAGCGTGAACCACGTTGTTTCCTTACTATTTTTATCCTTCAATTGTAGGAGAAAATATTGCCCGGGATGGTGGTTTTGAGGACATGGATACTTCACAAACCATGCAGGGAGATCCTTCTATCCTTTCCAGGTACTACTAAACTTAGAATGAGTACTTGCATTGTCTGGGAATTGCCGGATCATTACCGTGGAAGCCCATTTGGTCCATGAATATGGCCCACATGGCTAGTCCATCTAAACATGGGCCTTTGAACTGATATCTAAGCCCATCTATGTCAAACCATAGCAAATGGGATCTTAACTAGGAAGCGAAGAGCACACCGCTAACAGATATTTTACTTTTTGAGCTTTTTCTTTCGAGTTTTCCTTCAAAGTTTTTAAAACGCCTTTATAGGGAGAAGTTTCCACACCCTTATAAAAAACATTTCGTTCTCCTCTCCAATCGACGTTGAATCTCAT

mRNA sequence

ATGCTCTCAGCCCACTCCATTAACTCTATAACTTCTGTCGAAATGTTTGACGGCCAAAAATGGGGGAAAACAATACCAATGCGAGATTTGTTGTTTTCTTCAAGTGAAACAATTATTATGGAGAAAATATTGCCCGGGATGGTGGTTTTGAGGACATGGATACTTCACAAACCATGCAGGGAGATCCTTCTATCCTTTCCAGGTACTACTAAACTTAGAATGAGTACTTGCATTGTCTGGGAATTGCCGGATCATTACCGTGGAAGCCCATTTGGTCCATGAATATGGCCCACATGGCTAGTCCATCTAAACATGGGCCTTTGAACTGATATCTAAGCCCATCTATGTCAAACCATAGCAAATGGGATCTTAACTAGGAAGCGAAGAGCACACCGCTAACAGATATTTTACTTTTTGAGCTTTTTCTTTCGAGTTTTCCTTCAAAGTTTTTAAAACGCCTTTATAGGGAGAAGTTTCCACACCCTTATAAAAAACATTTCGTTCTCCTCTCCAATCGACGTTGAATCTCAT

Coding sequence (CDS)

ATGCTCTCAGCCCACTCCATTAACTCTATAACTTCTGTCGAAATGTTTGACGGCCAAAAATGGGGGAAAACAATACCAATGCGAGATTTGTTGTTTTCTTCAAGTGAAACAATTATTATGGAGAAAATATTGCCCGGGATGGTGGTTTTGAGGACATGGATACTTCACAAACCATGCAGGGAGATCCTTCTATCCTTTCCAGGTACTACTAAACTTAGAATGAGTACTTGCATTGTCTGGGAATTGCCGGATCATTACCGTGGAAGCCCATTTGGTCCATGA

Protein sequence

MLSAHSINSITSVEMFDGQKWGKTIPMRDLLFSSSETIIMEKILPGMVVLRTWILHKPCREILLSFPGTTKLRMSTCIVWELPDHYRGSPFGP
Homology
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BLAST of CmaCh19G001280 vs. NCBI nr
Match: KAG6571563.1 (hypothetical protein SDJN03_28291, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 16  FDGQKWGKTIPMRDLLFSSSETIIMEKILPGMVVLRTWILHKPCREILLSFPG 69
           F  +  GK +PMRDL+FSSSETIIMEKILPGMVVLRTWILHKPC EILLSFPG
Sbjct: 396 FTAKNGGKQVPMRDLMFSSSETIIMEKILPGMVVLRTWILHKPCTEILLSFPG 448

The following BLAST results are available for this feature:
BLAST of CmaCh19G001280 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G001280 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G001280 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571563.15.7e-1683.02hypothetical protein SDJN03_28291, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh19G001280 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G001280.1CmaCh19G001280.1mRNA