CmaCh19G000590 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G000590
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPRA1 family protein
LocationCma_Chr19: 320878 .. 321854 (-)
RNA-Seq ExpressionCmaCh19G000590
SyntenyCmaCh19G000590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTGTTCAGCCAACTCCATATGCCTTCTCTGAAACTCCCATCCTATCCCGTTTCAGACCCGCCTCCCATTCCATTTACGCCACTTTACGGCCATGGCGGGAGCTTCTCCAGCCGCCGTCGTCCTTCACCCGCCCTTCATCCATTTCCGAAGCGACCATTCGATGTAAGCGCAATCTCAACTACTTTCGTGTTAATTACACCTTCATCGTCTTGCTCATTCTCTTTCTCAGCCTCCTCTGGCACCCTGTTTCCTTGATTGTCTTCTTGATCGTGTTCGTTGCCTGGTTCTTCCTTTATTTTTTCACGGATGGTCCATTGGTGGTGTATAATCGTGTTGTTGATGATCGAGTCGTGTTGGCTGTGCTTGGATTGGTCACGATTGTCGCTTTGGTGTACACGGATGTGTCGTTGAACGTATTGATTTCGGTTTTGATTGGGGTTTTTCTTGTTTTGATACATGCCGCCTTTAGGGTTACAGAGGATTTGTATATTGACGAGCAAGAAGTCGCCGATGGCGGTATGCTTTCGGTTGTTGGCAGCAGATAAATCCCCGGTTCATAGTTTCTAGGTTACCAATGATGATCTTGCCTTGTCCGATCCAAGTTCTTCGTGCCACGATTCCAATGAGTATTAGATATCAATCTTTTCTCTCTAGCTATCACTTGGAGATCCGGTTTGATACCACTGATTATTTTAGGATGATTCTTTTATTACCAATTAAGTTTGAATGAGCATTTGGGTGTGATTTTCTGCAATGTTTTGGGTTTGAAGTGTTCTTTACTTTTGGAAAGATGGAATTTCAAACAGTAGATATCAATGTTGGGTTTGAATGTCCTGTTAATGTATACACTGTCTGTCTGCCATTTCATGTTGTTACTGTGGCGTTCTTTCTCTTCATCATGTTGGAAAATTTCTGGGTATGTTTGTTGATTCATGTGAACTATAATGGTGTGTTCCTGGCTCCAAATTTA

mRNA sequence

ATGGCCTCTGTTCAGCCAACTCCATATGCCTTCTCTGAAACTCCCATCCTATCCCGTTTCAGACCCGCCTCCCATTCCATTTACGCCACTTTACGGCCATGGCGGGAGCTTCTCCAGCCGCCGTCGTCCTTCACCCGCCCTTCATCCATTTCCGAAGCGACCATTCGATGGTTACAGAGGATTTGTATATTGACGAGCAAGAAGTCGCCGATGGCGGTATGCTTTCGGTTGTTGGCAGCAGATAAATCCCCGGTTCATAGTTTCTAGGTTACCAATGATGATCTTGCCTTGTCCGATCCAAGTTCTTCGTGCCACGATTCCAATGAGTATTAGATATCAATCTTTTCTCTCTAGCTATCACTTGGAGATCCGGTTTGATACCACTGATTATTTTAGGATGATTCTTTTATTACCAATTAAGTTTGAATGAGCATTTGGGTGTGATTTTCTGCAATGTTTTGGGTTTGAAGTGTTCTTTACTTTTGGAAAGATGGAATTTCAAACAGTAGATATCAATGTTGGGTTTGAATGTCCTGTTAATGTATACACTGTCTGTCTGCCATTTCATGTTGTTACTGTGGCGTTCTTTCTCTTCATCATGTTGGAAAATTTCTGGGTATGTTTGTTGATTCATGTGAACTATAATGGTGTGTTCCTGGCTCCAAATTTA

Coding sequence (CDS)

ATGGCCTCTGTTCAGCCAACTCCATATGCCTTCTCTGAAACTCCCATCCTATCCCGTTTCAGACCCGCCTCCCATTCCATTTACGCCACTTTACGGCCATGGCGGGAGCTTCTCCAGCCGCCGTCGTCCTTCACCCGCCCTTCATCCATTTCCGAAGCGACCATTCGATGGTTACAGAGGATTTGTATATTGACGAGCAAGAAGTCGCCGATGGCGGTATGCTTTCGGTTGTTGGCAGCAGATAAATCCCCGGTTCATAGTTTCTAG

Protein sequence

MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIRWLQRICILTSKKSPMAVCFRLLAADKSPVHSF
Homology
[Close]
BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match: A0A6J1HWW4 (PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111466988 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.9e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR
Sbjct: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 56

[Close]
BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match: A0A6J1HKD9 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111463820 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 47/56 (83.93%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSETPILSRF        ATLRPWRELLQPPSSF RPSSISEATIR
Sbjct: 1  MASVQPTPYAFSETPILSRF--------ATLRPWRELLQPPSSFIRPSSISEATIR 48

[Close]
BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match: A0A0A0LKV0 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G224290 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          M+S QP+PY F+ET ILSR R AS S+YATLRPWRELLQP SSFTRPSS+ EA IR
Sbjct: 1  MSSNQPSPYGFTETSILSRARAASDSLYATLRPWRELLQPLSSFTRPSSVGEAIIR 56

[Close]
BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match: A0A5A7UNI5 (PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001030 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-13
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          M+S QP PY F+ET ILSR R AS S+YATLRPWRELLQP SSFTRPSS+ EA IR
Sbjct: 1  MSSNQPYPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSVGEAIIR 56

[Close]
BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match: A0A1S3BMR2 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103491252 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-13
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          M+S QP PY F+ET ILSR R AS S+YATLRPWRELLQP SSFTRPSS+ EA IR
Sbjct: 1  MSSNQPYPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSVGEAIIR 56

[Close]
BLAST of CmaCh19G000590 vs. NCBI nr
Match: XP_022967499.1 (PRA1 family protein E-like [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 3.8e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR
Sbjct: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 56

[Close]
BLAST of CmaCh19G000590 vs. NCBI nr
Match: KAG7011248.1 (PRA1 family protein E, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 6.0e-15
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 0 

Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSETPILSRF        ATLRPWRELLQPPSSFTRPSSISEATIR
Sbjct: 1  MASVQPTPYAFSETPILSRF--------ATLRPWRELLQPPSSFTRPSSISEATIR 48

[Close]
BLAST of CmaCh19G000590 vs. NCBI nr
Match: XP_038887336.1 (PRA1 family protein E-like [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 6.0e-15
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          M+SVQP+PY F+ET ILSR R AS S+YATLRPWRELLQP SSFTRPSSI EATIR
Sbjct: 1  MSSVQPSPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSIGEATIR 56

[Close]
BLAST of CmaCh19G000590 vs. NCBI nr
Match: KAG6571486.1 (PRA1 family protein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 47/56 (83.93%), Postives = 48/56 (85.71%), Query Frame = 0 

Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSETPILSRF        ATL+PWRELLQPPSSFTRPSSISEATIR
Sbjct: 1  MASVQPTPYAFSETPILSRF--------ATLQPWRELLQPPSSFTRPSSISEATIR 48

[Close]
BLAST of CmaCh19G000590 vs. NCBI nr
Match: XP_023554093.1 (PRA1 family protein E-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-14
Identity = 47/56 (83.93%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSE PILSRF        ATLRPWRELLQPPSSFTRPSSISEATIR
Sbjct: 1  MASVQPTPYAFSEAPILSRF--------ATLRPWRELLQPPSSFTRPSSISEATIR 48

The following BLAST results are available for this feature:
BLAST of CmaCh19G000590 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HWW41.9e-22100.00PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111466988 PE=3 SV=1[more]
A0A6J1HKD91.4e-1483.93PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111463820 PE=3 SV=1[more]
A0A0A0LKV01.6e-1375.00PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G224290 PE=3 SV=1[more]
A0A5A7UNI52.7e-1375.00PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G... [more]
A0A1S3BMR22.7e-1375.00PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103491252 PE=3 SV=1[more]
BLAST of CmaCh19G000590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022967499.13.8e-22100.00PRA1 family protein E-like [Cucurbita maxima][more]
KAG7011248.16.0e-1585.71PRA1 family protein E, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038887336.16.0e-1580.36PRA1 family protein E-like [Benincasa hispida][more]
KAG6571486.11.7e-1483.93PRA1 family protein E, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023554093.12.3e-1483.93PRA1 family protein E-like [Cucurbita pepo subsp. pepo][more]
BLAST of CmaCh19G000590 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G000590.1CmaCh19G000590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane