CmaCh19G000510 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G000510
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Tetratricopeptide repeat-containing protein-like protein
Location	Cma_Chr19: 289063 .. 289521 (-)
RNA-Seq Expression	CmaCh19G000510
Synteny	CmaCh19G000510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCGGCTCGAATTCGCATACGCATCAGCAGCATTATTGTTCGTTTTAGCTCTGATGACACCCAAGATAGAGGCGCAAGCATGGTCATACCCTCCAAAACCCCTTTGTTCTTCACAGTTTGCGCTTGCAAGCTACGCTTGTGCAAGGCTGCCTCTCAACCTGGAGCCCCTCCCAATTTCTCCGCCTCCTTCGCCCCACGTGGAAGAAGGTCACAGGCATGGGCACGAGCATGGGCATGGACATCACCGTGGGCATCACCATGGGCACCACCACCGCAACCGCTCGCCCATCGAAGAGGAATGTTGCCGATGGGCGAGGCAAGTGGATAACGAATGCGTGTGCGATGCATTAGCTCATTTGGCTAACTTCATGGTGCGTCCCTCGCATGTGTTTACCGTGGCCATAACAGAAGACTGCATTGTCACTTACTCGTGCATTGGACGAATTAAGATTTGA

mRNA sequence

ATGGGGCGGCTCGAATTCGCATACGCATCAGCAGCATTATTGTTCGTTTTAGCTCTGATGACACCCAAGATAGAGGCGCAAGCATGGTCATACCCTCCAAAACCCCTTTGTTCTTCACAGTTTGCGCTTGCAAGCTACGCTTGTGCAAGGCTGCCTCTCAACCTGGAGCCCCTCCCAATTTCTCCGCCTCCTTCGCCCCACGTGGAAGAAGGTCACAGGCATGGGCACGAGCATGGGCATGGACATCACCGTGGGCATCACCATGGGCACCACCACCGCAACCGCTCGCCCATCGAAGAGGAATGTTGCCGATGGGCGAGGCAAGTGGATAACGAATGCGTGTGCGATGCATTAGCTCATTTGGCTAACTTCATGGTGCGTCCCTCGCATGTGTTTACCGTGGCCATAACAGAAGACTGCATTGTCACTTACTCGTGCATTGGACGAATTAAGATTTGA

Coding sequence (CDS)

ATGGGGCGGCTCGAATTCGCATACGCATCAGCAGCATTATTGTTCGTTTTAGCTCTGATGACACCCAAGATAGAGGCGCAAGCATGGTCATACCCTCCAAAACCCCTTTGTTCTTCACAGTTTGCGCTTGCAAGCTACGCTTGTGCAAGGCTGCCTCTCAACCTGGAGCCCCTCCCAATTTCTCCGCCTCCTTCGCCCCACGTGGAAGAAGGTCACAGGCATGGGCACGAGCATGGGCATGGACATCACCGTGGGCATCACCATGGGCACCACCACCGCAACCGCTCGCCCATCGAAGAGGAATGTTGCCGATGGGCGAGGCAAGTGGATAACGAATGCGTGTGCGATGCATTAGCTCATTTGGCTAACTTCATGGTGCGTCCCTCGCATGTGTTTACCGTGGCCATAACAGAAGACTGCATTGTCACTTACTCGTGCATTGGACGAATTAAGATTTGA

Protein sequence

MGRLEFAYASAALLFVLALMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPISPPPSPHVEEGHRHGHEHGHGHHRGHHHGHHHRNRSPIEEECCRWARQVDNECVCDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI

Homology

[Close]

BLAST of CmaCh19G000510 vs. ExPASy TrEMBL
Match: A0A6J1HVN1 (uncharacterized protein LOC111467082 OS=Cucurbita maxima OX=3661 GN=LOC111467082 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPI 60
           MGRLEFAYASAALLFVLALMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPI
Sbjct: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPI 60

Query: 61  SPPPSPHVEEGHRHGHEHGHGHHRGHHHGHHHRNRSPIEEECCRWARQVDNECVCDALAH 120
           SPPPSPHVEEGHRHGHEHGHGHHRGHHHGHHHRNRSPIEEECCRWARQVDNECVCDALAH
Sbjct: 61  SPPPSPHVEEGHRHGHEHGHGHHRGHHHGHHHRNRSPIEEECCRWARQVDNECVCDALAH 120

Query: 121 LANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 153
           LANFMVRPSHVFTVAITEDCIVTYSCIGRIKI
Sbjct: 121 LANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 152

[Close]

BLAST of CmaCh19G000510 vs. ExPASy TrEMBL
Match: A0A6J1DQT3 (uncharacterized protein LOC111022709 OS=Momordica charantia OX=3673 GN=LOC111022709 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.6e-52
Identity = 110/161 (68.32%), Postives = 126/161 (78.26%), Query Frame = 0


Query: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWS-----YPPKPLCSSQFALASYACARLPLNL 60
           MGR + A+  AAL   + ++ P++E QAWS      PP+PLCSSQFALASYACARLPLN 
Sbjct: 1   MGRFKIAHLLAAL--CVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNP 60

Query: 61  EPLPISPPPSPHVEEGHRHGHEHGHGHHRGHHHGHHHRNR----SPIEEECCRWARQVDN 120
           EP+PI PPPSP  E+GH HGH HGHGH  GH H HHHR R    SP+ EECCRWAR+VD+
Sbjct: 61  EPIPILPPPSPVDEDGHGHGHGHGHGHGHGHQHQHHHRRRHHTHSPVAEECCRWAREVDS 120

Query: 121 ECVCDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 153
           ECVCDAL HLANF++RPSH FTVAIT+DCIVTYSC GRIKI
Sbjct: 121 ECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI 159

[Close]

BLAST of CmaCh19G000510 vs. ExPASy TrEMBL
Match: A0A5E4EE79 (PREDICTED: histidine-rich OS=Prunus dulcis OX=3755 GN=ALMOND_2B027823 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 80/158 (50.63%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 14  LFVLALM-TPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPISPPPSP------ 73
           LFV +L+  PK+EAQ    PP+PLC+SQFALA+YACA LP    PLP  P P P      
Sbjct: 11  LFVASLLFVPKMEAQRLFPPPRPLCASQFALANYACALLPFTPTPLPTPPSPPPSSPPDD 70

Query: 74  --------HVEEGHRHGHEHGHGHHRGH----HHGHHHRNRSPIEEECCRWARQVDNECV 133
                     E GH HGH HGHGH  GH    H GHH  + SP E+ CCRW  Q+DNECV
Sbjct: 71  DGGQEQEHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAEDNCCRWLTQLDNECV 130

Query: 134 CDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 153
           C+ L HL  F+++P+H +TVA+ E C VTY+C   I+I
Sbjct: 131 CELLVHLPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 168

[Close]

BLAST of CmaCh19G000510 vs. ExPASy TrEMBL
Match: A0A251N5W9 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G243700 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 80/158 (50.63%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 14  LFVLALM-TPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPISPPPSP------ 73
           LFV +L+  PK+EAQ    PP+PLC+SQFALA+YACA LP    PLP  P P P      
Sbjct: 11  LFVASLLFVPKMEAQRLFPPPRPLCASQFALANYACALLPFTPTPLPTPPSPPPSSPPDD 70

Query: 74  --------HVEEGHRHGHEHGHGHHRGH----HHGHHHRNRSPIEEECCRWARQVDNECV 133
                     E GH HGH HGHGH  GH    H GHH  + SP E+ CCRW  Q+DNECV
Sbjct: 71  DGGQEQEHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAEDNCCRWLTQLDNECV 130

Query: 134 CDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 153
           C+ L HL  F+++P+H +TVA+ E C VTY+C   I+I
Sbjct: 131 CELLVHLPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 168

[Close]

BLAST of CmaCh19G000510 vs. ExPASy TrEMBL
Match: M5W0Q1 (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021373mg PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 5.0e-31
Identity = 77/152 (50.66%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 19  LMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPISPPPSP------------ 78
           L  PK+EAQ    PP+PLC+SQFALA+YACA LP    PLP  P P P            
Sbjct: 3   LFVPKMEAQRLFPPPRPLCASQFALANYACALLPFTPTPLPTPPSPPPSSPPDDDGGQEQ 62

Query: 79  --HVEEGHRHGHEHGHGHHRGH----HHGHHHRNRSPIEEECCRWARQVDNECVCDALAH 138
               E GH HGH HGHGH  GH    H GHH  + SP E+ CCRW  Q+DNECVC+ L H
Sbjct: 63  EHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAEDNCCRWLTQLDNECVCELLVH 122

Query: 139 LANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 153
           L  F+++P+H +TVA+ E C VTY+C   I+I
Sbjct: 123 LPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 154

[Close]

BLAST of CmaCh19G000510 vs. NCBI nr
Match: XP_022967638.1 (uncharacterized protein LOC111467082 [Cucurbita maxima])

HSP 1 Score: 312.0 bits (798), Expect = 2.8e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPI 60
           MGRLEFAYASAALLFVLALMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPI
Sbjct: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPI 60

Query: 61  SPPPSPHVEEGHRHGHEHGHGHHRGHHHGHHHRNRSPIEEECCRWARQVDNECVCDALAH 120
           SPPPSPHVEEGHRHGHEHGHGHHRGHHHGHHHRNRSPIEEECCRWARQVDNECVCDALAH
Sbjct: 61  SPPPSPHVEEGHRHGHEHGHGHHRGHHHGHHHRNRSPIEEECCRWARQVDNECVCDALAH 120

Query: 121 LANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 153
           LANFMVRPSHVFTVAITEDCIVTYSCIGRIKI
Sbjct: 121 LANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 152

[Close]

BLAST of CmaCh19G000510 vs. NCBI nr
Match: KAG6571480.1 (hypothetical protein SDJN03_28208, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011243.1 hypothetical protein SDJN02_26146, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 135/155 (87.10%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPI 60
           MGRLEFAY  AALLFVLALM P+I+AQAWSYPPKPLCSSQFALASYACARLPLN EPLPI
Sbjct: 1   MGRLEFAYTLAALLFVLALMIPEIDAQAWSYPPKPLCSSQFALASYACARLPLNPEPLPI 60

Query: 61  SPPPSPH---VEEGHRHGHEHGHGHHRGHHHGHHHRNRSPIEEECCRWARQVDNECVCDA 120
           SPP SPH    +  H H H+HGHGHHRGHHHGHHHR+RSPIEEECCRWARQVD+ECVCDA
Sbjct: 61  SPPSSPHGHGHDHDHNHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRWARQVDSECVCDA 120

Query: 121 LAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 153
           LAHLANFMVRPSHVFTVAITEDC+VTYSCIGRIKI
Sbjct: 121 LAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 155

[Close]

BLAST of CmaCh19G000510 vs. NCBI nr
Match: XP_022155619.1 (uncharacterized protein LOC111022709 [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-51
Identity = 110/161 (68.32%), Postives = 126/161 (78.26%), Query Frame = 0


Query: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWS-----YPPKPLCSSQFALASYACARLPLNL 60
           MGR + A+  AAL   + ++ P++E QAWS      PP+PLCSSQFALASYACARLPLN 
Sbjct: 1   MGRFKIAHLLAAL--CVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNP 60

Query: 61  EPLPISPPPSPHVEEGHRHGHEHGHGHHRGHHHGHHHRNR----SPIEEECCRWARQVDN 120
           EP+PI PPPSP  E+GH HGH HGHGH  GH H HHHR R    SP+ EECCRWAR+VD+
Sbjct: 61  EPIPILPPPSPVDEDGHGHGHGHGHGHGHGHQHQHHHRRRHHTHSPVAEECCRWAREVDS 120

Query: 121 ECVCDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 153
           ECVCDAL HLANF++RPSH FTVAIT+DCIVTYSC GRIKI
Sbjct: 121 ECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI 159

[Close]

BLAST of CmaCh19G000510 vs. NCBI nr
Match: XP_020426347.1 (uncharacterized protein LOC18767864 [Prunus persica] >XP_034229905.1 uncharacterized protein LOC117638857 [Prunus dulcis])

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-31
Identity = 80/158 (50.63%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 14  LFVLALM-TPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPISPPPSP------ 73
           LFV +L+  PK+EAQ    PP+PLC+SQFALA+YACA LP    PLP  P P P      
Sbjct: 48  LFVASLLFVPKMEAQRLFPPPRPLCASQFALANYACALLPFTPTPLPTPPSPPPSSPPDD 107

Query: 74  --------HVEEGHRHGHEHGHGHHRGH----HHGHHHRNRSPIEEECCRWARQVDNECV 133
                     E GH HGH HGHGH  GH    H GHH  + SP E+ CCRW  Q+DNECV
Sbjct: 108 DGGQEQEHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAEDNCCRWLTQLDNECV 167

Query: 134 CDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 153
           C+ L HL  F+++P+H +TVA+ E C VTY+C   I+I
Sbjct: 168 CELLVHLPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 205

[Close]

BLAST of CmaCh19G000510 vs. NCBI nr
Match: ONH93644.1 (hypothetical protein PRUPE_8G243700 [Prunus persica] >VVA14005.1 PREDICTED: histidine-rich [Prunus dulcis])

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-31
Identity = 80/158 (50.63%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 14  LFVLALM-TPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPISPPPSP------ 73
           LFV +L+  PK+EAQ    PP+PLC+SQFALA+YACA LP    PLP  P P P      
Sbjct: 11  LFVASLLFVPKMEAQRLFPPPRPLCASQFALANYACALLPFTPTPLPTPPSPPPSSPPDD 70

Query: 74  --------HVEEGHRHGHEHGHGHHRGH----HHGHHHRNRSPIEEECCRWARQVDNECV 133
                     E GH HGH HGHGH  GH    H GHH  + SP E+ CCRW  Q+DNECV
Sbjct: 71  DGGQEQEHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAEDNCCRWLTQLDNECV 130

Query: 134 CDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 153
           C+ L HL  F+++P+H +TVA+ E C VTY+C   I+I
Sbjct: 131 CELLVHLPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 168

[Close]

BLAST of CmaCh19G000510 vs. TAIR 10
Match: AT3G63095.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-19
Identity = 64/221 (28.96%), Postives = 85/221 (38.46%), Query Frame = 0


Query: 32  PPKPLCSSQFALASYACARLPLNL---------EPLPISPPPSPHVEEGHRHGHEHGHGH 91
           PP+PLC+SQ+ALA+YAC+RLP++           P PI+PPP  H    H H H+H H H
Sbjct: 28  PPRPLCASQYALANYACSRLPMHTVPPPAPITPPPAPIAPPPPEHDHHDHDHDHDHDHDH 87

Query: 92  ------------------------------------------------------------ 151
                                                                       
Sbjct: 88  DDDHDDDDDHDHDDDHDHDHDDDHDHDDDDRDRDRDRDRDRDRDRDHDRAHDDHDHNHDH 147

The following BLAST results are available for this feature:

BLAST of CmaCh19G000510 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G000510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVN1	1.4e-81	100.00	uncharacterized protein LOC111467082 OS=Cucurbita maxima OX=3661 GN=LOC111467082...	[more]
A0A6J1DQT3	6.6e-52	68.32	uncharacterized protein LOC111022709 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5E4EE79	2.9e-31	50.63	PREDICTED: histidine-rich OS=Prunus dulcis OX=3755 GN=ALMOND_2B027823 PE=4 SV=1	[more]
A0A251N5W9	2.9e-31	50.63	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G243700 PE=4 SV=1	[more]
M5W0Q1	5.0e-31	50.66	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021373m...	[more]

BLAST of CmaCh19G000510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967638.1	2.8e-81	100.00	uncharacterized protein LOC111467082 [Cucurbita maxima]	[more]
KAG6571480.1	1.1e-69	87.10	hypothetical protein SDJN03_28208, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022155619.1	1.4e-51	68.32	uncharacterized protein LOC111022709 [Momordica charantia]	[more]
XP_020426347.1	6.0e-31	50.63	uncharacterized protein LOC18767864 [Prunus persica] >XP_034229905.1 uncharacter...	[more]
ONH93644.1	6.0e-31	50.63	hypothetical protein PRUPE_8G243700 [Prunus persica] >VVA14005.1 PREDICTED: hist...	[more]

BLAST of CmaCh19G000510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63095.1	1.1e-19	28.96	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..93
None	No IPR available	PANTHER	PTHR34377:SF6	SUBFAMILY NOT NAMED	coord: 11..150
None	No IPR available	PANTHER	PTHR34377	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 11..150
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 91..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000510.1	CmaCh19G000510.1	mRNA