CmaCh19G000320 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G000320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr19: 182790 .. 183383 (-)
RNA-Seq ExpressionCmaCh19G000320
SyntenyCmaCh19G000320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGATATGCCTTCTCTACTGCCTTTTCAGTTTTTTGAAAGAAAAGGTGGGAATAGGATAGTGATAGTATGACTTTCTAGTTTGCTTCTTTGGAATTACTGTGTAGCACTTTCCTGTGTCCAGTGCCGCTTCGTTTTGTCATCTATGTAGTATGAAGCTGGTTCTTGCAAGGTTCGTCGTTGTCCTTCCAGGAGATCATTGATCACATGGAGCAGTATATGCGGTAAGCCTCTTTTACTGTCATCTTGCTCTGTTTCTGCAATATTTGTTCCATTGTTCATTTTCCTTATTTTCATGTACCAGAAACCTAAGGGTGAACAGTTCAGGTGATGGTTTCAGTGGCATGGTTGGTTTGTTGTGGACGTCGTTGGTCACAAGAGAGTTTTCGTCTTAGAAGCCTGGGTCCAGTTTGTGTTTGTGTTGTGTTTATCCTTGTATTGAAAGCTGTACACTTTCAGAGTCCTACTGTGGATCGTTGGAGCCTTTTGTTTTGTTTTCTTTGCATATCAGTTCCGATAGTAATTGCCTTCTTTCTGTTTTGAATGGCCTATGGTCATTGGCATTTCCAGAAAGTGAAGCAATATTGTAA

mRNA sequence

ATGAAGGAGATATGCCTTCTCTACTGCCTTTTCAGTTTTTTGAAAGAAAAGGAGATCATTGATCACATGGAGCAGTATATGCGAAACCTAAGGGTGAACAGTTCAGGTGATGGTTTCAGTGGCATGGTTGAGTCCTACTGTGGATCGTTGGAGCCTTTTGTTTTGTTTTCTTTGCATATCAGTTCCGATAGTAATTGCCTTCTTTCTGTTTTGAATGGCCTATGGTCATTGGCATTTCCAGAAAGTGAAGCAATATTGTAA

Coding sequence (CDS)

ATGAAGGAGATATGCCTTCTCTACTGCCTTTTCAGTTTTTTGAAAGAAAAGGAGATCATTGATCACATGGAGCAGTATATGCGAAACCTAAGGGTGAACAGTTCAGGTGATGGTTTCAGTGGCATGGTTGAGTCCTACTGTGGATCGTTGGAGCCTTTTGTTTTGTTTTCTTTGCATATCAGTTCCGATAGTAATTGCCTTCTTTCTGTTTTGAATGGCCTATGGTCATTGGCATTTCCAGAAAGTGAAGCAATATTGTAA

Protein sequence

MKEICLLYCLFSFLKEKEIIDHMEQYMRNLRVNSSGDGFSGMVESYCGSLEPFVLFSLHISSDSNCLLSVLNGLWSLAFPESEAIL
Homology
[Close]
BLAST of CmaCh19G000320 vs. NCBI nr
Match: KAG6571463.1 (hypothetical protein SDJN03_28191, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 3.9e-11
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 0 

Query: 1  MKEICLLYCLFSFLKEKEIIDHMEQYMRNLRVNSSGDGFSGMVESYCGSLEPFVLFSLHI 60
          MKEI LLYCLFSFLKEKEIIDH E+YMRN +V+SSGDGFSG V     SL    +F L  
Sbjct: 1  MKEIFLLYCLFSFLKEKEIIDHTERYMRNPKVSSSGDGFSGTVGLLWTSLNHERVFVLEE 60

Query: 61 SSDSNCL 68
             S CL
Sbjct: 61 PGSSLCL 67

[Close]
BLAST of CmaCh19G000320 vs. NCBI nr
Match: KAG7011227.1 (hypothetical protein SDJN02_26130, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-10
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1   MKEICLLYCLFSFLKEKEIIDHMEQYMRNLRVNSSGDGFSGMV 44
           MKEI LLYCLFSFLKEKEIIDH E+YMRN +V+SSGDGFSG V
Sbjct: 201 MKEIFLLYCLFSFLKEKEIIDHTERYMRNPKVSSSGDGFSGTV 243

The following BLAST results are available for this feature:
BLAST of CmaCh19G000320 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G000320 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G000320 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571463.13.9e-1164.18hypothetical protein SDJN03_28191, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011227.14.3e-1083.72hypothetical protein SDJN02_26130, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh19G000320 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G000320.1CmaCh19G000320.1mRNA