CmaCh19G000110 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G000110
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr19: 71885 .. 73817 (-)
RNA-Seq ExpressionCmaCh19G000110
SyntenyCmaCh19G000110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCGAGCCAATTTTTATCCTAGGGTGTTGTTTAAAATGATTAATCTGCGGTTACTGAACATGGGGTCGAATCCACCGTTCAGCATGTGGGCCTTTGACTCGATGCTTCCTTCCCTCTCCCCATGGTTTAAGAATCTACATCCTATTTGTGGAAGCATGGGAATGTGGGCGTGGGGCTAAGAAATTGGCAGAACTTGGGTGGCATAGCCGAATAAGGCAAAAATAAAAAGTACTATGAGGTGGGTGGTTTTACATCTATTAGGCCCTGTCCTGACGATGATGTCTAGAACTATACCGTAATAGTTTTTTACTTGAATGAACTTCTGGTCTGGTGCACCATTTTCTTAAAAGCCTCCCATTATATTTACTTTTTAACCTCCCTCTTCCAGATTTGAGTGGATAGGTCGTTTCTGGCTACCCACCCACTGACATAGTTAAAGAACAATTTTCGTTGTTATCGAGTCTCAACACTTGAACAGATTATGCTTTTTAGAGAATCCAATATTGGGGAAAAGTGTTGAAATGAATTAAACAATACTTATCTTATTTGATTAATCGAATGAGTACCATCCCAAAAATAGAATCCGATTAGAATTAGAACATCGATAACCTTGTTTGGAGGACCCTGCTTTTAGTTGAGAATCTCTCTTATTTCTAGCTTGTTTTAAAATTGTCGTTTCTGCTATCTTGTACAATCTGAATCGGCTCACGTTCTATCTTGAAAACTGCACCAGATTATTCTCCTCTGGTGTTTCTTTATTATTCTTTTCTCCAATTAGACCTGACTTATTTTGGTAGGATTATCAATTGTGCCCTTCCTTACATTTCTGGGGAAAAAAATATAGTGTGGGTCCTTGACTTGGGACTTCAGAATTGAATTTGGTGGTCTTAAACCTTATAGAGATATGTTACAACATTGTTTAAAGTTTATTTCAACTTTAGGCTGTACTGTTGACACCAGGAGTGATGCATCCCACCAAAAACCTCATTGTTGGCTGGTGCAGGAGGTATAGGTATTAGTTCAGAAATGATATTTAAGCCATTTTGTTGGGTGTAAAATGATGTTCAAACTCGTTTCATATCTTTACAAGTGCATTAATTATTAAATAAGTTTTAGTTGAGAATCTCAAGACTTATTTCTTGTTTTTGTTTTCTTTTTCTGCCGTGACTAGGCTGGGCTGAAAGAAATTGGTTGCAGCCCAGTTGGTGAAGTATTGCTATTACTGTTACAAGAATTTCTTTAAAAGAAGAAAGCAATAAGGAAGAGAGGAAAAAAGCCATGGTCAACATCATGTAAGACTTTTCTGTCAGAGACTCTAGGTTGCTTGCTAACATTGTAAAGGTAGCACCTTATCCCTTTTACTCTACCGTTGCTTTTTATCTAAAAAATAATAATACGTTTTTCTTTTGTTCATCTGTTTGATGAGTAGATTCTTGTGTTTATAGATATTCAGAATTATAAGTAGAGTGTTGAATGTCGACATACATTGCATATATAGAGATAGAAAGCAAATAAATTCACATGAAAAGACCCAACTTGATTTTCCTTTGCTCTTTCTTGTTGGCTTAATTAACTTGTAAATATTATACATGTGATGAAATGTTAAAGAGAGCTTTATTGGAAGTTGGGCAAGGCAGGCTGCTCTTTTTAGACATGGGGATTCTGCTTCTTTTGGCAAGCAAAGCGAAGCCAAAAAGGTATTGGTTTCTTATGACCATGGAAGTCAATTTTTTTGTGCTATTCACATTCTACGCCTCCATGGTACAGGCAGTGGCCCTAATGAGCCCCAACTCCACCCTCTTGCATGGCTGCATCTCATGTTTGTTGGCTTTAACTAGAAGAAAAATAGTGTTTTCCAAGATAATAAAGGCTTGGAGAGAGCTCCCAACTTTATTTTGCCTTTGGGCAATTTTTAAACTAATGCATTGA

mRNA sequence

ATGATTCGAGCCAATTTTTATCCTAGGGTGTTGTTTAAAATGATTAATCTGCGGTTACTGAACATGGGGTCGAATCCACCGTTCAGCATGTGGGCCTTTGACTCGATGCTTCCTTCCCTCTCCCCATGGTTTAAGAATCTACATCCTATTTGTGGAAGCATGGGAATAATTGAATTTGGTGGTCTTAAACCTTATAGAGATATGTTACAACATTGTTTAAAGTTTATTTCAACTTTAGGCTGTACTGTTGACACCAGGAGTGATGCATCCCACCAAAAACCTCATTGTTGGCTGGTGCAGGAGGCTGGGCTGAAAGAAATTGGTTGCAGCCCAGTTGGTGAAGTATTGCTATTACTAGACTCTAGGTTGCTTGCTAACATTGTAAAGAGAGCTTTATTGGAAGTTGGGCAAGGCAGGCTGCTCTTTTTAGACATGGGGATTCTGCTTCTTTTGGCAAGCAAAGCGAAGCCAAAAAGGTATTGGTTTCTTATGACCATGGAAGTCAATTTTTTTGTGCTATTCACATTCTACGCCTCCATGGTACAGGCAGTGGCCCTAATGAGCCCCAACTCCACCCTCTTGCATGGCTGCATCTCATGTTTGTTGGCTTTAACTAGAAGAAAAATAGTGTTTTCCAAGATAATAAAGGCTTGGAGAGAGCTCCCAACTTTATTTTGCCTTTGGGCAATTTTTAAACTAATGCATTGA

Coding sequence (CDS)

ATGATTCGAGCCAATTTTTATCCTAGGGTGTTGTTTAAAATGATTAATCTGCGGTTACTGAACATGGGGTCGAATCCACCGTTCAGCATGTGGGCCTTTGACTCGATGCTTCCTTCCCTCTCCCCATGGTTTAAGAATCTACATCCTATTTGTGGAAGCATGGGAATAATTGAATTTGGTGGTCTTAAACCTTATAGAGATATGTTACAACATTGTTTAAAGTTTATTTCAACTTTAGGCTGTACTGTTGACACCAGGAGTGATGCATCCCACCAAAAACCTCATTGTTGGCTGGTGCAGGAGGCTGGGCTGAAAGAAATTGGTTGCAGCCCAGTTGGTGAAGTATTGCTATTACTAGACTCTAGGTTGCTTGCTAACATTGTAAAGAGAGCTTTATTGGAAGTTGGGCAAGGCAGGCTGCTCTTTTTAGACATGGGGATTCTGCTTCTTTTGGCAAGCAAAGCGAAGCCAAAAAGGTATTGGTTTCTTATGACCATGGAAGTCAATTTTTTTGTGCTATTCACATTCTACGCCTCCATGGTACAGGCAGTGGCCCTAATGAGCCCCAACTCCACCCTCTTGCATGGCTGCATCTCATGTTTGTTGGCTTTAACTAGAAGAAAAATAGTGTTTTCCAAGATAATAAAGGCTTGGAGAGAGCTCCCAACTTTATTTTGCCTTTGGGCAATTTTTAAACTAATGCATTGA

Protein sequence

MIRANFYPRVLFKMINLRLLNMGSNPPFSMWAFDSMLPSLSPWFKNLHPICGSMGIIEFGGLKPYRDMLQHCLKFISTLGCTVDTRSDASHQKPHCWLVQEAGLKEIGCSPVGEVLLLLDSRLLANIVKRALLEVGQGRLLFLDMGILLLLASKAKPKRYWFLMTMEVNFFVLFTFYASMVQAVALMSPNSTLLHGCISCLLALTRRKIVFSKIIKAWRELPTLFCLWAIFKLMH
Homology
[Close]
BLAST of CmaCh19G000110 vs. NCBI nr
Match: KAG6571444.1 (hypothetical protein SDJN03_28172, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.5 bits (358), Expect = 4.6e-30
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0 

Query: 87  SDASHQKPHCWLVQEAGLKEIGCSPVGEVLLLLDSRLLANIVKRALLEVGQGRLLFLDMG 146
           SDASHQKPHCWLVQEAGLKEIGCSPVGEVLLLLDSRLLANIVKRALLEVGQGRLLFLDMG
Sbjct: 29  SDASHQKPHCWLVQEAGLKEIGCSPVGEVLLLLDSRLLANIVKRALLEVGQGRLLFLDMG 88

Query: 147 ILLLLASKAKPKR 160
           ILLLLASKAK KR
Sbjct: 89  ILLLLASKAKAKR 101

The following BLAST results are available for this feature:
BLAST of CmaCh19G000110 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G000110 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G000110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571444.14.6e-3098.63hypothetical protein SDJN03_28172, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh19G000110 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G000110.1CmaCh19G000110.1mRNA