CmaCh18G013430 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G013430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Fe2OG dioxygenase domain-containing protein
Location	Cma_Chr18: 10210319 .. 10211671 (+)
RNA-Seq Expression	CmaCh18G013430
Synteny	CmaCh18G013430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGAGTTCATCGCGCTATCTTCGATGTACTATCTAATACTTTTCTTTTTCATTTTGGTTTATCCGTCCCACGTTGTAAAATTGATTCTTTTGCCCAAATAATAAACTTATGGCCACAAAAGATGTTATTGATTGATTTGAAAACCAAAAGGCAGAAAGGCAGAGGAGGAAGGTTATGTGTGGAGTTTGAAACTAAAGAGTCTTGAGAAATTCCATGATGTATGTGTTGAAAGCACAAGAGTGGACCTTGAAGCCTTGAAATCCAGCAGCCTTGGCCAAGGCGTGGAACTCCTGCTCGGTCCTTTCTTTGCCTCCAGGGTTGTGAGCCAGCATTATGACATCGATGTGAATCACTCCCTTGGTGGCAAGGCTGCTGTCTGGTGCAACCGGAAGAATGCATTCTGCCACGATCACCTTCCCATGCTCCGGCAGAGAATCGTGGCAATTCTTCAACAATTTCAGGCAGTGCTGGTCGCTCCAATCGTGACAGATCCACTGCAAACCCCACATTACATCAGACCAAATACATACATACAATACAGAGTCGGTATAGGTATGGGTGTATGTGTTCTAAATTCAGTTACTTTACCTTCATGAAAATAGCATCCCCCTTTGGCACGCTCACAAACATGTCTCCCCCAACATGTTGGACGCCTGCAGCAGCCATTTCAATGAAGAAGCAATTGAGAATTCGGATGCATATTTATTAAATTCCCAGTTCCGAAACAGAGGTTACCTGGGTAGGCAGGGGCGTCCTGAATGACATGAGGGAGGTCGAAGTTGATGCCCCTAATAGAAGGGTACTTGGAGACTATCATGTTGAGAACAGCTCCGGTCCCACCGCCCACATCCACCACTGAATTAAGGCCTTCGAAGCCTTTGTAGGTCTCTAGAATCTTCTTCATGGTAATGGTGGAATGGTCGGACATTCCCCTGTTGAACACCCTGTTGAATCTCGGATCTGTTCCATGATATTCGAACGCCGTCATTCCGTATGCTTTGTTGAATGGAATTCCTCCTTCCAGTACCGCATCTTTCAAATGGTACCTTCATTCCCAAAACATACAAATAAAGTCATGGTTCCTTAAAAATAAAATTATTAAAATTATTCCCAAAACATTTTGGAGCAGGGTAGCAGAGGAGCTAAGCTCTGATCTGACTTCCACATCTAATTGTCTAAAAAGAGTTAATTTTGAATCATTAATTATGCATACACTTGGTTAGATTTATTATTTGTAATTTGAATCTGAAGCAGAGGAAGGATGGAAAGGTGGGTAATTACCAGCTCTCCATGAGGACCTTGTCCTGGTTCATGAGACACAGGGGAGCGATGGAGACGCCGTCTTGA

mRNA sequence

ATGGCCAAGAGCAGAAAGGCAGAGGAGGAAGGTTATGTGTGGAGTTTGAAACTAAAGAGTCTTGAGAAATTCCATGATGTATGTGTTGAAAGCACAAGAGTGGACCTTGAAGCCTTGAAATCCAGCAGCCTTGGCCAAGGCGTGGAACTCCTGCTCGGTCCTTTCTTTGCCTCCAGGGTTGTGAGCCAGCATTATGACATCGATGTGAATCACTCCCTTGGTGGCAAGGCTGCTGTCTGGTGCAACCGGAAGAATGCATTCTGCCACGATCACCTTCCCATGCTCCGGCAGAGAATCGTGGCAATTCTTCAACAATTTCAGGCAGTGCTGGTCGCTCCAATCGTGACAGATCCACTGCAAACCCCACATTACATCAGACCAAATACATACATACAATACAGAGTCGGTATAGAGGTTACCTGGGTAGGCAGGGGCGTCCTGAATGACATGAGGGAGGTCGAAGTTGATGCCCCTAATAGAAGGCAGAGGAAGGATGGAAAGGTGGGTAATTACCAGCTCTCCATGAGGACCTTGTCCTGGTTCATGAGACACAGGGGAGCGATGGAGACGCCGTCTTGA

Coding sequence (CDS)

ATGGCCAAGAGCAGAAAGGCAGAGGAGGAAGGTTATGTGTGGAGTTTGAAACTAAAGAGTCTTGAGAAATTCCATGATGTATGTGTTGAAAGCACAAGAGTGGACCTTGAAGCCTTGAAATCCAGCAGCCTTGGCCAAGGCGTGGAACTCCTGCTCGGTCCTTTCTTTGCCTCCAGGGTTGTGAGCCAGCATTATGACATCGATGTGAATCACTCCCTTGGTGGCAAGGCTGCTGTCTGGTGCAACCGGAAGAATGCATTCTGCCACGATCACCTTCCCATGCTCCGGCAGAGAATCGTGGCAATTCTTCAACAATTTCAGGCAGTGCTGGTCGCTCCAATCGTGACAGATCCACTGCAAACCCCACATTACATCAGACCAAATACATACATACAATACAGAGTCGGTATAGAGGTTACCTGGGTAGGCAGGGGCGTCCTGAATGACATGAGGGAGGTCGAAGTTGATGCCCCTAATAGAAGGCAGAGGAAGGATGGAAAGGTGGGTAATTACCAGCTCTCCATGAGGACCTTGTCCTGGTTCATGAGACACAGGGGAGCGATGGAGACGCCGTCTTGA

Protein sequence

MAKSRKAEEEGYVWSLKLKSLEKFHDVCVESTRVDLEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPMLRQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEVDAPNRRQRKDGKVGNYQLSMRTLSWFMRHRGAMETPS

Homology

[Close]

BLAST of CmaCh18G013430 vs. ExPASy TrEMBL
Match: A0A4D9BDX9 (Fe2OG dioxygenase domain-containing protein OS=Salvia splendens OX=180675 GN=Saspl_010014 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.7e-17
Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 21  LEKFHDVCVESTRVDLEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVW 80
           L++ H+  + STR  +E +++SS GQ V+ L  PF A+ VV QH D++V++ LGGKA+VW
Sbjct: 111 LQQLHNPRIVSTRSLVEVVEASSFGQVVKFLFCPFLATWVVGQHDDVNVDNILGGKASVW 170

Query: 81  CNRKNAFCHDHLPMLRQRIVAILQQFQAVLVAPIVTDPL 120
           C  +N    ++LP+L Q I+AILQ+F  VL+ P++ DPL
Sbjct: 171 CLWQNTLSQNYLPILWQCIIAILQEFHTVLITPVMADPL 209

[Close]

BLAST of CmaCh18G013430 vs. ExPASy TrEMBL
Match: A0A0E0EI39 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 52/132 (39.39%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           +EA +S   G+  EL L P  A+ VV +H  +DV H L  +  V   R++A  H HLP+L
Sbjct: 43  VEAGESGGAGEVPELPLVPLLAAGVVGEHDHVDVEHPLLPRRRVGALRQHALHHHHLPVL 102

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTW--VGRGVLNDMREV 155
           RQR+VA+ QQ +AVLVAP+V DPL     +    +    V  +V      R + +D+ EV
Sbjct: 103 RQRVVAVPQQPRAVLVAPVVEDPLHQDG-VAAAGHGGEHVAADVLHPRERRRLGDDVGEV 162

Query: 156 EVDAPNRRQRKD 166
            VD P+ R  +D
Sbjct: 163 VVDPPDVRVARD 173

[Close]

BLAST of CmaCh18G013430 vs. ExPASy TrEMBL
Match: C0PCA7 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. ExPASy TrEMBL
Match: C4J6W8 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. ExPASy TrEMBL
Match: C4JBG2 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. NCBI nr
Match: ACR36918.1 (unknown [Zea mays])

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-06
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. NCBI nr
Match: ACR38512.1 (unknown [Zea mays])

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-06
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. NCBI nr
Match: ACN31802.1 (unknown [Zea mays])

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-06
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           LE  ++ +L +  EL L P  A+ VV +H  +DV  +L     +  +R++A   D L + 
Sbjct: 26  LEPGEAGALCELAELALVPLLAAGVVREHDHVDVEDALRLGGGLRVDRQHALDDDDLAIF 85

Query: 96  RQRIVAILQQFQAVLVAPIVTDPLQTPHYIRPNTYIQYRVGIEVTWVGRGVLNDMREVEV 155
           RQR+VA+L+Q  AV VAP+V DPL        +        +      R + +D+R+VEV
Sbjct: 86  RQRVVAVLEQRGAVRVAPVVEDPLHEDGVAGGHGREHVPAHVAHAGERRRLGDDVRQVEV 145

Query: 156 D 157
           D
Sbjct: 146 D 146

[Close]

BLAST of CmaCh18G013430 vs. NCBI nr
Match: KAF3789229.1 (hypothetical protein EJ110_NYTH18891 [Nymphaea thermarum])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 36  LEALKSSSLGQGVELLLGPFFASRVVSQHYDIDVNHSLGGKAAVWCNRKNAFCHDHLPML 95
           L++ + +SL Q  ELL  P   +RVV QH  + + ++      V   R++   HDHL + 
Sbjct: 193 LDSGEPTSLCQFFELLQRPLLPTRVVRQHEHVHLINASTRVTVVNALRQDRLNHDHLAVF 252

Query: 96  RQRIVAILQQFQAVLVAPIVTDPL 120
           RQR+ A+LQQ   VL+ P++ D L
Sbjct: 253 RQRLAAVLQQLHTVLIPPVMKDQL 276

The following BLAST results are available for this feature:

BLAST of CmaCh18G013430 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh18G013430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D9BDX9	6.7e-17	46.46	Fe2OG dioxygenase domain-containing protein OS=Salvia splendens OX=180675 GN=Sas...	[more]
A0A0E0EI39	7.2e-11	39.39	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
C0PCA7	1.4e-06	33.88	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]
C4J6W8	1.4e-06	33.88	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]
C4JBG2	1.4e-06	33.88	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of CmaCh18G013430 vs. NCBI nr


Match Name	E-value	Identity	Description
ACR36918.1	2.9e-06	33.88	unknown [Zea mays]	[more]
ACR38512.1	2.9e-06	33.88	unknown [Zea mays]	[more]
ACN31802.1	2.9e-06	33.88	unknown [Zea mays]	[more]
KAF3789229.1	1.2e-04	36.90	hypothetical protein EJ110_NYTH18891 [Nymphaea thermarum]	[more]

BLAST of CmaCh18G013430 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G013430.1	CmaCh18G013430.1	mRNA