CmaCh18G013370 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G013370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ubiquitin
Location	Cma_Chr18: 10189514 .. 10191372 (+)
RNA-Seq Expression	CmaCh18G013370
Synteny	CmaCh18G013370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATTGGGATACGGTAATCCTGCACCCGAACACCCATCCCTACAAAACCCTAATTCAAAACCGTATAAATAAGGCTTATAATCGACATTCCTACGAGGAGGTCAGTGTCGCAAAGGCAGAGTTGCAAACCAGAGAGAGCCTTAACGACGACACGACAGGATGCAGATCTTCGTCAAAACCCTTACTGGGAAGACGATTACGTTGGAAGTTGAGTCCAGCGATACCATCGACAATGTCAAAGCTAAGATCCAGGACAAGGAAGGTTCGATTTTTTTTTTTCTAAATTATCTGCTTTTTCAAGCAATATTTCTTCTTATTCTTTTCATCGTTCTTAATGCATGTGTTTTGGACTTTAATGATTCCCGGTGCATGTTTCAGGTATTCCTCCGGACCAGCAGAGGCTTATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGAACTCTCGCCGACTACAACATCCAGAAGGGTTGGTGCTATGCCTTTCATTGTATTCTCTTTCCTATTTAGAAAAATTAATCGTGCTAATAAAATTTGAGAAAATAGCGAATTGTTTGTTGATTAGGTAATCTCAGCCACTGGGTTTGGTTTATCTGTAAATCTTCTTTTGCGACCGTCTTGGTTTTAATTTGAATACATGCTTTGCTTGTTGATTAGCGTTTTGTATGTCATGTGACATCTGTGAGAATCGAAACTGGGTGTGGAGTTTCCGTTCTGACATCGTCAAGATGCACTTTCTGATTCTTGTAATGAGCTAGGATGTGCTCAATTACCATCTGAAAATGTTTTCAAACTTGCAGCTATCTACTTTGGTTGCGAAGAAAATAAAGAATTTGAGTTAGTTCATACTTTCCAGTTATATAATTTTGCGAATAGGATATTTTGGTATTAAAATGTCTCTAAACAATGATTTATTCCAAAATTTAGGGATTTAATTATAAACGCCTCTTGATGACTTAGATTAGTGCAGTGTTCTAGAAGGTGAAAATTGCATCTCATTGCCATCATTTTTCTCTTGTAGAGTCAACTCTGCACTTGGTGCTCAGGCTTCGTGGTGGTATAATCGAGCCCTCTTTGATGGCTTTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTAAGCTTCTATACTTATCATTATTTATATAAAAGATGTTCCAATCGGTTCTTCAAGATGGAGGGGTTTGTGGTTTTGTCTTGCAATTAAAATTATACTCGGAGATGGATGTGTTGGGTGGTTATCCATACCTTTTCTGTTTTAATTTCTTTAGCATTAGTTCAATTTCCAAATAAGTTTATGAACATCCTATGTCTTTAGAAGCCAAAACGTTGCACTAGAGTTAGAATTTATATACATACGTTTGTGGTGGCTTTCTTAATCATTATCAAAGGTTGCTCACGTACAATTGTATTACAACAGGTGCTATGCCCGCCTGCACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGGTAATTTATTGTTTCCTGGTGTAATTTTCTGATAAATCTGTAAATCTTGCTGCCACTACTTATAAAACCTTTTTTGGTTCATCATTGACTTGCAGTTGAGGCCAAAGAAGAAGATCAAGTAGACCATTGATTTCGAGAGAGGAAACCTATGCAAAAGTTTATGTTTTTATTTATTTTTGGGTGCATTTATGCTCAGAACTATTTGCTTAACACTCCTTAGGAGTTGGAATTGTTGTAATTTTTGTTTCTGCGACATTCTCAGTTATGGTAAGTTTTGCTCTCGACTTTGGAGTACCAAATCTTCGGTCATTTTGTTTCCCATTAACAGCTCATTTTTGGACTCTTTCCCTCTGTTAACAAGTAACTAG

mRNA sequence

ATAATTGGGATACGGTAATCCTGCACCCGAACACCCATCCCTACAAAACCCTAATTCAAAACCGTATAAATAAGGCTTATAATCGACATTCCTACGAGGAGGTCAGTGTCGCAAAGGCAGAGTTGCAAACCAGAGAGAGCCTTAACGACGACACGACAGGATGCAGATCTTCGTCAAAACCCTTACTGGGAAGACGATTACGTTGGAAGTTGAGTCCAGCGATACCATCGACAATGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAGCAGAGGCTTATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGAACTCTCGCCGACTACAACATCCAGAAGGAGTCAACTCTGCACTTGGTGCTCAGGCTTCGTGGTGGTATAATCGAGCCCTCTTTGATGGCTTTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCCCGCCTGCACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGACCATTGATTTCGAGAGAGGAAACCTATGCAAAAGTTTATGTTTTTATTTATTTTTGGGTGCATTTATGCTCAGAACTATTTGCTTAACACTCCTTAGGAGTTGGAATTGTTGTAATTTTTGTTTCTGCGACATTCTCAGTTATGGTAAGTTTTGCTCTCGACTTTGGAGTACCAAATCTTCGGTCATTTTGTTTCCCATTAACAGCTCATTTTTGGACTCTTTCCCTCTGTTAACAAGTAACTAG

Coding sequence (CDS)

ATGCAGATCTTCGTCAAAACCCTTACTGGGAAGACGATTACGTTGGAAGTTGAGTCCAGCGATACCATCGACAATGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAGCAGAGGCTTATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGAACTCTCGCCGACTACAACATCCAGAAGGAGTCAACTCTGCACTTGGTGCTCAGGCTTCGTGGTGGTATAATCGAGCCCTCTTTGATGGCTTTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCCCGCCTGCACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGACCATTGATTTCGAGAGAGGAAACCTATGCAAAAGTTTATGTTTTTATTTATTTTTGGGTGCATTTATGCTCAGAACTATTTGCTTAACACTCCTTAGGAGTTGGAATTGTTGTAATTTTTGTTTCTGCGACATTCTCAGTTATGGTAAGTTTTGCTCTCGACTTTGGAGTACCAAATCTTCGGTCATTTTGTTTCCCATTAACAGCTCATTTTTGGACTCTTTCCCTCTGTTAACAAGTAACTAG

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQTIDFERGNLCKSLCFYLFLGAFMLRTICLTLLRSWNCCNFCFCDILSYGKFCSRLWSTKSSVILFPINSSFLDSFPLLTSN

Homology

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BLAST of CmaCh18G013370 vs. ExPASy Swiss-Prot
Match: P49636 (Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris OX=4096 GN=UBICEP52-7 PE=2 SV=2)

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-62
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQ 120

[Close]

BLAST of CmaCh18G013370 vs. ExPASy Swiss-Prot
Match: B9DHA6 (Ubiquitin-60S ribosomal protein L40-1 OS=Arabidopsis thaliana OX=3702 GN=RPL40A PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.4e-62
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]

BLAST of CmaCh18G013370 vs. ExPASy Swiss-Prot
Match: P0CH34 (Ubiquitin-60S ribosomal protein L40-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Ub-CEP52-1 PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.4e-62
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]

BLAST of CmaCh18G013370 vs. ExPASy Swiss-Prot
Match: Q42202 (Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana OX=3702 GN=RPL40B PE=2 SV=2)

HSP 1 Score: 240.0 bits (611), Expect = 2.4e-62
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]

BLAST of CmaCh18G013370 vs. ExPASy Swiss-Prot
Match: P0CH35 (Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Ub-CEP52-2 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.4e-62
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

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BLAST of CmaCh18G013370 vs. ExPASy TrEMBL
Match: A0A4D8YPT6 (Ubiquitin OS=Salvia splendens OX=180675 GN=RP-L40e PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.6e-61
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 TIDFE 126
             + E
Sbjct: 121 VFEAE 125

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BLAST of CmaCh18G013370 vs. ExPASy TrEMBL
Match: A0A2G5CUA0 (Ubiquitin OS=Aquilegia coerulea OX=218851 GN=AQUCO_03700255v1 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 7.9e-61
Identity = 121/124 (97.58%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 TIDF 125
              F
Sbjct: 121 VFFF 124

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BLAST of CmaCh18G013370 vs. ExPASy TrEMBL
Match: A0A371G5J5 (Ubiquitin OS=Mucuna pruriens OX=157652 GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 7.9e-61
Identity = 130/160 (81.25%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDK ICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 T-IDFERGNLCKSL-CFYLFLGAFMLRTICLTLLRSWNCC 159
             I F   ++  +L   Y+ + AF+L  I   L+ S+  C
Sbjct: 121 VRIRFVIDSILATLPPRYIMVTAFLLLEIVWLLVESFGIC 160

[Close]

BLAST of CmaCh18G013370 vs. ExPASy TrEMBL
Match: A0A0V0H5Q6 (Ubiquitin OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 7.9e-61
Identity = 124/150 (82.67%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQ+KMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 TIDFER------GNLCKSLCFYLFLGAFML 145
               ++       N C+ +  ++FL  ++L
Sbjct: 121 LRPKKKIKXILNSNCCRLVVAWIFLSKYIL 150

[Close]

BLAST of CmaCh18G013370 vs. ExPASy TrEMBL
Match: V4SRQ5 (Ubiquitin OS=Citrus clementina OX=85681 GN=CICLE_v10013083mg PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.0e-60
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 TI 123
            +
Sbjct: 121 VL 122

[Close]

BLAST of CmaCh18G013370 vs. NCBI nr
Match: RDX85824.1 (Ubiquitin-60S ribosomal protein L40 [Mucuna pruriens])

HSP 1 Score: 243.4 bits (620), Expect = 1.6e-60
Identity = 130/160 (81.25%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDK ICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 T-IDFERGNLCKSL-CFYLFLGAFMLRTICLTLLRSWNCC 159
             I F   ++  +L   Y+ + AF+L  I   L+ S+  C
Sbjct: 121 VRIRFVIDSILATLPPRYIMVTAFLLLEIVWLLVESFGIC 160

[Close]

BLAST of CmaCh18G013370 vs. NCBI nr
Match: XP_013633058.1 (PREDICTED: ubiquitin-like [Brassica oleracea var. oleracea])

HSP 1 Score: 243.4 bits (620), Expect = 1.6e-60
Identity = 124/144 (86.11%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 TIDFERGNLCKSLCFYLFLGAFML 145
                       L +Y+F   ++L
Sbjct: 121 V----------GLSYYIFFNLYLL 134

[Close]

BLAST of CmaCh18G013370 vs. NCBI nr
Match: PIA34853.1 (hypothetical protein AQUCO_03700255v1 [Aquilegia coerulea])

HSP 1 Score: 243.4 bits (620), Expect = 1.6e-60
Identity = 121/124 (97.58%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 TIDF 125
              F
Sbjct: 121 VFFF 124

[Close]

BLAST of CmaCh18G013370 vs. NCBI nr
Match: KAF9601361.1 (hypothetical protein IFM89_019093 [Coptis chinensis])

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-60
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 TI 123
            +
Sbjct: 121 VL 122

[Close]

BLAST of CmaCh18G013370 vs. NCBI nr
Match: KAG4396494.1 (hypothetical protein GLYMA_19G195500v4 [Glycine max])

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-60
Identity = 125/144 (86.81%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 TIDFERGNLCKSLCFYLFLGAFML 145
            +   R +     C  L + +F+L
Sbjct: 121 -VGLRRRS--SEFCVILLVSSFVL 141

[Close]

BLAST of CmaCh18G013370 vs. TAIR 10
Match: AT2G36170.1 (Ubiquitin supergroup;Ribosomal protein L40e )

HSP 1 Score: 240.0 bits (611), Expect = 1.7e-63
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]

BLAST of CmaCh18G013370 vs. TAIR 10
Match: AT3G52590.1 (ubiquitin extension protein 1 )

HSP 1 Score: 240.0 bits (611), Expect = 1.7e-63
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]

BLAST of CmaCh18G013370 vs. TAIR 10
Match: AT1G65350.1 (ubiquitin 13 )

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

[Close]

BLAST of CmaCh18G013370 vs. TAIR 10
Match: AT4G05320.2 (polyubiquitin 10 )

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

[Close]

BLAST of CmaCh18G013370 vs. TAIR 10
Match: AT4G02890.1 (Ubiquitin family protein )

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

The following BLAST results are available for this feature:

BLAST of CmaCh18G013370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49636	1.4e-62	99.17	Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris OX=4096 GN=UBICEP52-...	[more]
B9DHA6	2.4e-62	99.17	Ubiquitin-60S ribosomal protein L40-1 OS=Arabidopsis thaliana OX=3702 GN=RPL40A ...	[more]
P0CH34	2.4e-62	99.17	Ubiquitin-60S ribosomal protein L40-1 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q42202	2.4e-62	99.17	Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana OX=3702 GN=RPL40B ...	[more]
P0CH35	2.4e-62	99.17	Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of CmaCh18G013370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D8YPT6	3.6e-61	96.80	Ubiquitin OS=Salvia splendens OX=180675 GN=RP-L40e PE=3 SV=1	[more]
A0A2G5CUA0	7.9e-61	97.58	Ubiquitin OS=Aquilegia coerulea OX=218851 GN=AQUCO_03700255v1 PE=3 SV=1	[more]
A0A371G5J5	7.9e-61	81.25	Ubiquitin OS=Mucuna pruriens OX=157652 GN=UBICEP52-7 PE=3 SV=1	[more]
A0A0V0H5Q6	7.9e-61	82.67	Ubiquitin OS=Solanum chacoense OX=4108 PE=3 SV=1	[more]
V4SRQ5	1.0e-60	98.36	Ubiquitin OS=Citrus clementina OX=85681 GN=CICLE_v10013083mg PE=3 SV=1	[more]

BLAST of CmaCh18G013370 vs. NCBI nr


Match Name	E-value	Identity	Description
RDX85824.1	1.6e-60	81.25	Ubiquitin-60S ribosomal protein L40 [Mucuna pruriens]	[more]
XP_013633058.1	1.6e-60	86.11	PREDICTED: ubiquitin-like [Brassica oleracea var. oleracea]	[more]
PIA34853.1	1.6e-60	97.58	hypothetical protein AQUCO_03700255v1 [Aquilegia coerulea]	[more]
KAF9601361.1	2.1e-60	98.36	hypothetical protein IFM89_019093 [Coptis chinensis]	[more]
KAG4396494.1	2.1e-60	86.81	hypothetical protein GLYMA_19G195500v4 [Glycine max]	[more]

BLAST of CmaCh18G013370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36170.1	1.7e-63	99.17	Ubiquitin supergroup;Ribosomal protein L40e	[more]
AT3G52590.1	1.7e-63	99.17	ubiquitin extension protein 1	[more]
AT1G65350.1	1.8e-36	98.70	ubiquitin 13	[more]
AT4G05320.2	1.8e-36	98.70	polyubiquitin 10	[more]
AT4G02890.1	1.8e-36	98.70	Ubiquitin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019956	Ubiquitin domain	PRINTS	PR00348	UBIQUITIN	coord: 53..74 score: 91.18 coord: 11..31 score: 85.2 coord: 32..52 score: 95.05
IPR001975	Ribosomal protein L40e	SMART	SM01377	Ribosomal_L40e_3	coord: 77..128 e-value: 1.6E-26 score: 104.1
IPR001975	Ribosomal protein L40e	PFAM	PF01020	Ribosomal_L40e	coord: 78..121 e-value: 8.8E-28 score: 96.0
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 1..72 e-value: 3.0E-35 score: 133.1
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 3..74 e-value: 1.1E-33 score: 114.8
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..76 score: 30.452106
None	No IPR available	GENE3D	3.10.20.90		coord: 1..79 e-value: 1.9E-45 score: 154.7
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..122
None	No IPR available	PANTHER	PTHR10666:SF342	UBIQUITIN-60S RIBOSOMAL PROTEIN L40	coord: 1..122
None	No IPR available	CDD	cd01803	Ubl_ubiquitin	coord: 1..76 e-value: 7.18724E-60 score: 179.948
IPR038587	Ribosomal protein L40e superfamily	GENE3D	4.10.1060.50		coord: 80..122 e-value: 1.4E-28 score: 100.6
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..76
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 76..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G013370.1	CmaCh18G013370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019941	modification-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0031386	protein tag
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0005515	protein binding