CmaCh18G013210 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G013210
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr18: 10120202 .. 10121665 (+)
RNA-Seq ExpressionCmaCh18G013210
SyntenyCmaCh18G013210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTGCTATTGGAGGTCTTTTTTTATGGAGGCCACCTTCCATCATGTTTGAGTACTTTTCAATGGAAACATTTAAAAAGAAAAAAGGCTTTAAGTTGACTCTGATGAAGGGCAGGCAAGGCAGGCAGTGCATGCAACTTTAGAAACCATTCCTTTCTTACACGAAGAAGTAGAAAGATCAGTCGTGGCCTCCAAAACCACTGCCTTTCTTATTTCCTTTTTTCCTTCTCTACAGGTAACATAATCTTTCAACATCACAGAACTCGCTCAGTGCCATAGCTTAAGAGACAGATAACCTCCTTTTTTTCTTCCTTCCATTGCAGGAGAGTTTGAGGCCTCCAATACTAGGATGAATCTTAATCACTCTCCTAACAAGGTATACTGTAAAGTGGTGAATATGTGGTTTTTCATGTTTGGAAGCTATTTACTTTTCTCTTTAACAACTTCTCTAGTCCCTACTGTCAGAGACATGAGAGATCCAGATATTATACAAGTATATAATTTGATGTCAACAGATTCGTTAAGAACAGTTCTGATGAGTTTGATCTGTTTCAGGAATCTGACCTGGACGAGAATTTCTGAGGTGTGAGTAATTTTCACTCAGGAAAGTTATACAATGTGTATTGTGTTGGTTAGCTTACAGTAATGTTTTCTTACATGAAGGATGGATTCCAAAGGGAGATGAGGAAGCTTTTGATTGTTTACAGACCAGATTATGATGATCCTGTGGATAAGCATGAGCCTCAGAAACCAGGCACTGGAAAGACATAGGACTTGAGATTCCTGTGTTTCCCTTGGGCAAATAATGAGGATGAAAATGGGAACTCTCCTGATAGTCTCCTTGTGAACCAAATAAGACTTCCAAATTGAAAAGTTCTGAATCCTAACGGAAGGTGTAGAATGATTCAACAAGTTGTAGTGCAGTTTTAGAGGCATGATAGTTAAGGCGTCAAACTCTTGTGAGGGTAGGTTAAGTCATCTAAACTAGCTTAAGATGTGATACATTGTATAACTATTCACTTACACTTTACAGATGAAAAGTATGGAACAATAAGCTGATTATACAACAGTGGGACACACAAACTTTAAAGACAGAAAATAGAGGACGCCCACCAAATACCGAAAGAAACGACCCCAATCGTACCAAAAGCTTGAGCCACTTCATATATGACGTTGTCTTGCTGGAGGGGCAAATTCTGCCAATCTGTCCGCCTGCATCTCACCTCCAGTTAGTTTAAATCATATTTGTATTGGAAGAACTCCCGCAACAACAAATAAGACAGTCTAATAACTGAGATCGAGTTTCGAGTTTCGTTAGCTGCTGTATTTAGCTTCTCAGAAGAAAGTACTGTTTCTATGCATTTGGAAACAAGCAAAGCCATTTGAACTTTGATTCTTTTAATGCCTACTATTATGACGGTCTCCTCATTTGACATGTTTATACTTAAGTGTACTCACCC

mRNA sequence

ATGGCTGCTGCTATTGGAGGCAAGGCAGGCAGTGCATGCAACTTTAGAAACCATTCCTTTCTTACACGAAGAAGTAGAAAGATCAGTCGTGGCCTCCAAAACCACTGCCTTTCTTATTTCCTTTTTTCCTTCTCTACAGGAGAGTTTGAGGCCTCCAATACTAGGATGAATCTTAATCACTCTCCTAACAAGGTATACTGTAAAGTGGTGAATATGTGGTTTTTCATGTTTGGAAGCTATTTACTTTTCTCTTTAACAACTTCTCTAGTCCCTACTGTCAGAGACATGAGAGATCCAGATATTATACAAGTATATAATTTGATGTCAACAGATTCGTTAAGAACAGTTCTGATGAGTTTGATCTGTTTCAGGAATCTGACCTGGACGAGAATTTCTGAGGATGGATTCCAAAGGGAGATGAGGAAGCTTTTGATTGTTTACAGACCAGATTATGATGATCCTGTGGATAAGCATGAGCCTCAGAAACCAGGCACTGGAAAGACATAGGACTTGAGATTCCTGTGTTTCCCTTGGGCAAATAATGAGGATGAAAATGGGAACTCTCCTGATAGTCTCCTTGTGAACCAAATAAGACTTCCAAATTGAAAAGTTCTGAATCCTAACGGAAGGTGTAGAATGATTCAACAAGTTGTAGTGCAGTTTTAGAGGCATGATAGTTAAGGCGTCAAACTCTTGTGAGGATGAAAAGTATGGAACAATAAGCTGATTATACAACAGTGGGACACACAAACTTTAAAGACAGAAAATAGAGGACGCCCACCAAATACCGAAAGAAACGACCCCAATCGTACCAAAAGCTTGAGCCACTTCATATATGACGTTGTCTTGCTGGAGGGGCAAATTCTGCCAATCTGTCCGCCTGCATCTCACCTCCAGTTAGTTTAAATCATATTTGTATTGGAAGAACTCCCGCAACAACAAATAAGACAGTCTAATAACTGAGATCGAGTTTCGAGTTTCGTTAGCTGCTGTATTTAGCTTCTCAGAAGAAAGTACTGTTTCTATGCATTTGGAAACAAGCAAAGCCATTTGAACTTTGATTCTTTTAATGCCTACTATTATGACGGTCTCCTCATTTGACATGTTTATACTTAAGTGTACTCACCC

Coding sequence (CDS)

ATGGCTGCTGCTATTGGAGGCAAGGCAGGCAGTGCATGCAACTTTAGAAACCATTCCTTTCTTACACGAAGAAGTAGAAAGATCAGTCGTGGCCTCCAAAACCACTGCCTTTCTTATTTCCTTTTTTCCTTCTCTACAGGAGAGTTTGAGGCCTCCAATACTAGGATGAATCTTAATCACTCTCCTAACAAGGTATACTGTAAAGTGGTGAATATGTGGTTTTTCATGTTTGGAAGCTATTTACTTTTCTCTTTAACAACTTCTCTAGTCCCTACTGTCAGAGACATGAGAGATCCAGATATTATACAAGTATATAATTTGATGTCAACAGATTCGTTAAGAACAGTTCTGATGAGTTTGATCTGTTTCAGGAATCTGACCTGGACGAGAATTTCTGAGGATGGATTCCAAAGGGAGATGAGGAAGCTTTTGATTGTTTACAGACCAGATTATGATGATCCTGTGGATAAGCATGAGCCTCAGAAACCAGGCACTGGAAAGACATAG

Protein sequence

MAAAIGGKAGSACNFRNHSFLTRRSRKISRGLQNHCLSYFLFSFSTGEFEASNTRMNLNHSPNKVYCKVVNMWFFMFGSYLLFSLTTSLVPTVRDMRDPDIIQVYNLMSTDSLRTVLMSLICFRNLTWTRISEDGFQREMRKLLIVYRPDYDDPVDKHEPQKPGTGKT
Homology
[Close]
BLAST of CmaCh18G013210 vs. ExPASy TrEMBL
Match: A0A6J1G0E0 (uncharacterized protein LOC111449569 OS=Cucurbita moschata OX=3662 GN=LOC111449569 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 108/113 (95.58%), Postives = 109/113 (96.46%), Query Frame = 0 

Query: 56  MNLNHSPNKVYCKVVNMWFFMFGSYLLFSLTTSLVPTVRDMRDPDIIQVYNLMSTDSLRT 115
           MNLNHSPNKVYCKVVNMWFFMFGSYLLFSLTT L+PTVRDMRDPDIIQVYNLMSTDSLRT
Sbjct: 1   MNLNHSPNKVYCKVVNMWFFMFGSYLLFSLTTYLLPTVRDMRDPDIIQVYNLMSTDSLRT 60

Query: 116 VLMSLICFRNLTWTRISEDGFQREMRKLLIVYRPDYDDPVDKHEPQKPGTGKT 169
           VLMSLICFRNLTW RISEDGFQ EMRKLLIVYRPDYDDPVD HEPQKPGTGKT
Sbjct: 61  VLMSLICFRNLTWMRISEDGFQMEMRKLLIVYRPDYDDPVDNHEPQKPGTGKT 113

[Close]
BLAST of CmaCh18G013210 vs. NCBI nr
Match: XP_022945271.1 (uncharacterized protein LOC111449569 [Cucurbita moschata])

HSP 1 Score: 226.1 bits (575), Expect = 2.3e-55
Identity = 108/113 (95.58%), Postives = 109/113 (96.46%), Query Frame = 0 

Query: 56  MNLNHSPNKVYCKVVNMWFFMFGSYLLFSLTTSLVPTVRDMRDPDIIQVYNLMSTDSLRT 115
           MNLNHSPNKVYCKVVNMWFFMFGSYLLFSLTT L+PTVRDMRDPDIIQVYNLMSTDSLRT
Sbjct: 1   MNLNHSPNKVYCKVVNMWFFMFGSYLLFSLTTYLLPTVRDMRDPDIIQVYNLMSTDSLRT 60

Query: 116 VLMSLICFRNLTWTRISEDGFQREMRKLLIVYRPDYDDPVDKHEPQKPGTGKT 169
           VLMSLICFRNLTW RISEDGFQ EMRKLLIVYRPDYDDPVD HEPQKPGTGKT
Sbjct: 61  VLMSLICFRNLTWMRISEDGFQMEMRKLLIVYRPDYDDPVDNHEPQKPGTGKT 113

[Close]
BLAST of CmaCh18G013210 vs. NCBI nr
Match: KAG7013312.1 (hypothetical protein SDJN02_26071, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 52/122 (42.62%), Postives = 53/122 (43.44%), Query Frame = 0 

Query: 47  GEFEASNTRMNLNHSPNKVYCKVVNMWFFMFGSYLLFSLTTSLVPTVRDMRDPDIIQVYN 106
           GEF ASNT+MNLNHSPNKVY KV                                     
Sbjct: 7   GEFGASNTKMNLNHSPNKVYRKV------------------------------------- 64

Query: 107 LMSTDSLRTVLMSLICFRNLTWTRISEDGFQREMRKLLIVYRPDYDDPVDKHEPQKPGTG 166
                                      DGFQ EMRKLLIVYRPDYDDPVD HEPQKP TG
Sbjct: 67  ---------------------------DGFQMEMRKLLIVYRPDYDDPVDNHEPQKPATG 64

Query: 167 KT 169
           KT
Sbjct: 127 KT 64

The following BLAST results are available for this feature:
BLAST of CmaCh18G013210 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh18G013210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G0E01.1e-5595.58uncharacterized protein LOC111449569 OS=Cucurbita moschata OX=3662 GN=LOC1114495... [more]
BLAST of CmaCh18G013210 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945271.12.3e-5595.58uncharacterized protein LOC111449569 [Cucurbita moschata][more]
KAG7013312.11.1e-1242.62hypothetical protein SDJN02_26071, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh18G013210 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G013210.1CmaCh18G013210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane