CmaCh18G012780 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G012780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
Location	Cma_Chr18: 9901980 .. 9904516 (+)
RNA-Seq Expression	CmaCh18G012780
Synteny	CmaCh18G012780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGAGAAAGGCCCCTTCGTTCTCCCAAAGCGCCTAGCTCGTCACGATTTACAGAGTGATCGACAGAGAGACATAGGAGTTTTCCGACGATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATTGGTATGTATATAATTTTCTTCAACCAAAGTTCTACCTTTACATATTTGTGAATTTTTTATGTACAGTCTATTTCCGTTTCATTTCCTTTTCCTATCTGTTTCGTTTTGGGAAGGGAATGTATGAACTGGGGATGGAAGTTGGCAGGATTTTGAGTTATGTGAGATTTCTATTCTTTCATTGCGTAGAAATGATGAAAACCGAACCTTTCGTACTCAAATTATGAGTTTGGCATCGGTAATGAGACCTTGCAGGCATGTTTTAAATACAAAGGATCCCTATATAAGAGAAAGATTATGGGTATATGAAATCTTTTTGGGTAGACGAAAAGCAAAGTTGTTGTTAGTATTTATGATCAAAGTGGACGATATCATGTCATCGAGGAGATAGATAGAGGTTGTATGATCCCAAATAGCTGGTATTAGAGTCATGTCCCTAACTTAGCCGTGTTAATAAAATTCTTGAGTTCCAAATGTAAATGTAGTTAGTCATGAATCCGTGGTTGAGGTTTTGGATAGGTAGTGTGTGCTGTGAGGAGTAAACCTAATTAAAAAGTAATATGTAAAAGTGCAGTTTGAAGGTACGACTATGTGAGGGGAGACTCGAGATGATACTTTGTGCTAGAGGAGGATTGTTTGCGTTGACTAGATAAGAATAAATCATATAACCGGAGGATTGTTGGCACTGACTAGATAAGAAAAAAATCATGGGTTATATGAGTGGGAACAATCGTCTCCATTGGTATAAGACTTTTTTAGAGAAAGCAAAAGCAAAATCACGAGTGTTTATGCTCGAAGTGGACAATAACATACCATTACAATAACATACCATTACGGGGAAGATCATTGAAAATACAAACAAAGTCCCACATTGACCTTATAAAGAAAAAGTCATAGGTAGATGAGTGAGGACAACCTTCTCCAATAAAAAATGAGGCCTTTGTGAGAAAATCAAAACAAAGCCACGAAGGTTTATGCCGAAAGTGGAGATTATCATACTATTGTGGAGATAGGTCGTTGATGGTCGAATAATGGCATTTGCATCTTGTTGTACTGACAAAGCTGTGTTAACACCTATGAATTAGACTGTACATATCCTTTTGTCATTGCTAGCTTCTGGCCTAATAGCAATCCCTGATTTCTGTTATAACCTGAGGATGGTGAAAATTGCATATGTGAAGCAAATCCAGACAGAGAGCTTATGCATATGTGAAAATTGCATAAGCTCTCATGGCCTAATATGCCCGACTTCTCTGGTCTTAGCTGCATTGGCGCACATTCATTATTTCATAGATGGAACCAATATTTAAAATGTCAATGTCTACGAAAATGTCAAGATCTCAATTTTATGAAAATTTCAATGAAAATACTGAGAAAATGCGAGCTTCCCCTTTGCTCTATAGAAATGGATGGAAATGCCTACTACTAATTCCCGTTAGAAAGGTTCACAGTCAGGGGCTGAAAACCAGTGTCAATGAATATTTATTTAGAACCGGTCATCACAATCTGTTTGTAGTTTTGTTAGTGATAAGTTATTTGAAATCTGCAGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCCAAGCATGTTCCTCTGCACCGACCAGGCCCTCTCCCAGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTAGTGCACAGAAAGTAGAGACGGCCGACAAAGCGTCTCAGGTGACAGAATGATCCATCTTCACCATTTGGAGATTTCAAGTTTCAGAATCGAAACCTGTTCTTTATCTAATTATGTTTGTTCTTCAATAGGAATGATTGTTCGCAAAGTCGTGTACTTCAATAATAATCTTTACCCGACTCTGGAATGACATAAATTTACCCTTTCTTTGTCTTGTTTAAATTTTACTGTGCACACCAGCCCAGTCACTTATGGACTGGTTTTGAGAATCAGCAATTTTAATCTTTTATTCCATAGATTGGAGAATAATTACTAAATTTTGGGGTTTGTGCTTATTTGGTCACTAAAAGTGTCAGATTGGTCTATGAACTTTGATGGATGCATCTTTTTGTTCTCGGACTTGGAAGACAATAATTTGAAGATTAATTCAAGAACTTATTAG

mRNA sequence

GGGAGAGAAAGGCCCCTTCGTTCTCCCAAAGCGCCTAGCTCGTCACGATTTACAGAGTGATCGACAGAGAGACATAGGAGTTTTCCGACGATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATTGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCCAAGCATGTTCCTCTGCACCGACCAGGCCCTCTCCCAGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTAGTGCACAGAAAGTAGAGACGGCCGACAAAGCGTCTCAGGTGACAGAATGATCCATCTTCACCATTTGGAGATTTCAAGTTTCAGAATCGAAACCTGTTCTTTATCTAATTATGTTTGTTCTTCAATAGGAATGATTGTTCGCAAAGTCGTGTACTTCAATAATAATCTTTACCCGACTCTGGAATGACATAAATTTACCCTTTCTTTGTCTTGTTTAAATTTTACTGTGCACACCAGCCCAGTCACTTATGGACTGGTTTTGAGAATCAGCAATTTTAATCTTTTATTCCATAGATTGGAGAATAATTACTAAATTTTGGGGTTTGTGCTTATTTGGTCACTAAAAGTGTCAGATTGGTCTATGAACTTTGATGGATGCATCTTTTTGTTCTCGGACTTGGAAGACAATAATTTGAAGATTAATTCAAGAACTTATTAG

Coding sequence (CDS)

ATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATTGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCCAAGCATGTTCCTCTGCACCGACCAGGCCCTCTCCCAGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTAGTGCACAGAAAGTAGAGACGGCCGACAAAGCGTCTCAGGTGACAGAATGA

Protein sequence

MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE

Homology

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BLAST of CmaCh18G012780 vs. ExPASy Swiss-Prot
Match: Q9FLX7 (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g52840 PE=1 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.3e-73
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAR VLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TR RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI 150
           ENDAP+PKHVP HRPGPLPE+FYKTLE +
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGL 149

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BLAST of CmaCh18G012780 vs. ExPASy Swiss-Prot
Match: Q559Z4 (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyostelium discoideum OX=44689 GN=ndufa5 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-17
Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K++TGI GL V PNAR +L GLY + L++++ +P   GYRK+ E  T+ RL V + E D
Sbjct: 6   IKKSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETD 65

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 121
             +IE ++  GQ+EELI +A+++LK++  + E   W +PD  +  V+
Sbjct: 66  IVKIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPDKNKPPVV 112

[Close]

BLAST of CmaCh18G012780 vs. ExPASy Swiss-Prot
Match: P23935 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus OX=9913 GN=NDUFA5 PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-14
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY K L  +  +P++  YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            +++E+RL  GQ+EE+I +A++EL L  KMI+W PW
Sbjct: 65  VKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 100

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BLAST of CmaCh18G012780 vs. ExPASy Swiss-Prot
Match: Q9CPP6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus OX=10090 GN=Ndufa5 PE=1 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-13
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY KTL  ++  P+   YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            +++E  L  G+VEE+I +A+ EL L  KM++W PW
Sbjct: 65  VKKLEALLQGGEVEEVILQAEKELSLARKMLKWKPW 100

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BLAST of CmaCh18G012780 vs. ExPASy Swiss-Prot
Match: Q18359 (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Caenorhabditis elegans OX=6239 GN=C33A12.1 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.6e-13
Identity = 35/95 (36.84%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 15  KQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEEDW 74
           K+TTGI GL V  +    L  +YG+ L+ ++ +P D  YRK  E+  + RL + Q E D 
Sbjct: 40  KKTTGITGLFVNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDI 99

Query: 75  EQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
           +++E+++G GQ+EE+IE+A+ EL+    +++   W
Sbjct: 100 KKLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAW 134

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BLAST of CmaCh18G012780 vs. ExPASy TrEMBL
Match: A0A6J1HXB9 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467715 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.1e-90
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 170

[Close]

BLAST of CmaCh18G012780 vs. ExPASy TrEMBL
Match: A0A6J1G1X4 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111449938 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGG SAQKVETADKASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGG-SAQKVETADKASQVTE 169

[Close]

BLAST of CmaCh18G012780 vs. ExPASy TrEMBL
Match: A0A6J1CII6 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111011683 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.7e-83
Identity = 158/170 (92.94%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGL+VVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLEVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEE+DWE+IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEDDWEKIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
           ENDA VPKH+PLHRPGPLPEEFYKTLEAI  GG S+QKVETA+KASQVTE
Sbjct: 121 ENDASVPKHIPLHRPGPLPEEFYKTLEAI--GGGSSQKVETAEKASQVTE 168

[Close]

BLAST of CmaCh18G012780 vs. ExPASy TrEMBL
Match: A0A1S3AZ47 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484126 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.7e-83
Identity = 159/170 (93.53%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAIS  G S +KVET +KASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAIS--GDSTRKVETTEKASQVTE 168

[Close]

BLAST of CmaCh18G012780 vs. ExPASy TrEMBL
Match: A0A6J1JA00 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111482620 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.4e-82
Identity = 157/170 (92.35%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEEEDWE+IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TNHRLKVCQEEEDWEKIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAIS  G  AQKV++A+K SQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAIS--GDGAQKVDSAEKTSQVTE 168

[Close]

BLAST of CmaCh18G012780 vs. NCBI nr
Match: XP_022968495.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Cucurbita maxima])

HSP 1 Score: 340.9 bits (873), Expect = 6.4e-90
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 170

[Close]

BLAST of CmaCh18G012780 vs. NCBI nr
Match: XP_022945797.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Cucurbita moschata] >XP_023542504.1 probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.1 bits (858), Expect = 3.5e-88
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGG SAQKVETADKASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGG-SAQKVETADKASQVTE 169

[Close]

BLAST of CmaCh18G012780 vs. NCBI nr
Match: KAG6574208.1 (putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013272.1 putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 333.6 bits (854), Expect = 1.0e-87
Identity = 168/170 (98.82%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGG SAQKVET DKASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGG-SAQKVETTDKASQVTE 169

[Close]

BLAST of CmaCh18G012780 vs. NCBI nr
Match: XP_008439300.1 (PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Cucumis melo])

HSP 1 Score: 317.4 bits (812), Expect = 7.6e-83
Identity = 159/170 (93.53%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAIS  G S +KVET +KASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAIS--GDSTRKVETTEKASQVTE 168

[Close]

BLAST of CmaCh18G012780 vs. NCBI nr
Match: XP_022141236.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Momordica charantia])

HSP 1 Score: 317.4 bits (812), Expect = 7.6e-83
Identity = 158/170 (92.94%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGL+VVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLEVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEE+DWE+IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEDDWEKIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
           ENDA VPKH+PLHRPGPLPEEFYKTLEAI  GG S+QKVETA+KASQVTE
Sbjct: 121 ENDASVPKHIPLHRPGPLPEEFYKTLEAI--GGGSSQKVETAEKASQVTE 168

[Close]

BLAST of CmaCh18G012780 vs. TAIR 10
Match: AT5G52840.1 (NADH-ubiquinone oxidoreductase-related )

HSP 1 Score: 275.8 bits (704), Expect = 2.3e-74
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAR VLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TR RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI 150
           ENDAP+PKHVP HRPGPLPE+FYKTLE +
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGL 149

[Close]

BLAST of CmaCh18G012780 vs. TAIR 10
Match: AT4G28005.1 (BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT5G52840.1); Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24
Identity = 76/170 (44.71%), Postives = 88/170 (51.76%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MF RVIGRPLLAKVKQTTGIV                                       
Sbjct: 1   MFQRVIGRPLLAKVKQTTGIV--------------------------------------- 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
                +VC EEEDW  IEKRL CG+VEELIEEA DEL L+ KMI              +I
Sbjct: 61  -----EVCPEEEDWGVIEKRLACGKVEELIEEASDELTLVGKMI--------GSLHPNLI 115

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 171
              AP+PKHVP HRPGPLPEEFY+TL+A++S  S  +   T+    Q+ E
Sbjct: 121 L--APIPKHVPHHRPGPLPEEFYRTLQAVNS-ESKTEITATSSSDPQLKE 115

The following BLAST results are available for this feature:

BLAST of CmaCh18G012780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLX7	3.3e-73	88.59	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
Q559Z4	5.7e-17	41.12	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyos...	[more]
P23935	1.6e-14	42.71	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus OX=99...	[more]
Q9CPP6	5.0e-13	41.67	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus OX=...	[more]
Q18359	6.6e-13	36.84	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Caenorh...	[more]

BLAST of CmaCh18G012780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HXB9	3.1e-90	100.00	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
A0A6J1G1X4	1.7e-88	99.41	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
A0A6J1CII6	3.7e-83	92.94	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
A0A1S3AZ47	3.7e-83	93.53	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
A0A6J1JA00	2.4e-82	92.35	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]

BLAST of CmaCh18G012780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022968495.1	6.4e-90	100.00	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
XP_022945797.1	3.5e-88	99.41	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
KAG6574208.1	1.0e-87	98.82	putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
XP_008439300.1	7.6e-83	93.53	PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5...	[more]
XP_022141236.1	7.6e-83	92.94	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]

BLAST of CmaCh18G012780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52840.1	2.3e-74	88.59	NADH-ubiquinone oxidoreductase-related	[more]
AT4G28005.1	1.0e-24	44.71	BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-relat...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006806	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	PFAM	PF04716	ETC_C1_NDUFA5	coord: 22..88 e-value: 3.2E-27 score: 94.1
IPR006806	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	PANTHER	PTHR12653	NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT	coord: 1..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..170
None	No IPR available	PANTHER	PTHR12653:SF1	BNAA02G10640D PROTEIN	coord: 1..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G012780.1	CmaCh18G012780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0016491	oxidoreductase activity