CmaCh18G012570 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G012570
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr18: 9800652 .. 9802509 (-)
RNA-Seq ExpressionCmaCh18G012570
SyntenyCmaCh18G012570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACACAAGATTAGAAGCAAGAGCAGCAACACTGATATTATCACACCACGTAATGAGAGGAGCAAATATAGTCACACGGAGTTCATGAAGAAGAAAACACAAGCAGATCAAGTGATGTTTCAACATACACTCAATATTCACCTACTGATTAGTGATCATTGGGAGAAGCCTCCTAATCAGTATCAGAAAACACTTGTAGGGTTAATGATGGTGTAGGATGCAAGGCTAATTCAAGATTCATAGTCCCCTAAGATAACAAAGAAGACGTTTATATAAGTATTGGTAGGAGGAGGAGGTGGTGGGGTGAAGGGGGAAGGCAAAGGCATTGAAGAAGCATGAGTAGTCGAGGATATAGACGAAGTGTGTGGTGTAATGGAAGATGGGGAAAAGGGAAGGGATCTGGTAGTTGAAGTTGGGGCCTAGGCGAAGATGGAGATGCTGGCAGACTAAGAGAACAAGTGTCAAAGGGAGTTGAGGGTATAGGTTGAAGTAAGGGAAGCCATGTCAATATTGGGGAGGTTGAATCAATGGTTGTGGGGAAGTTCGGGGCAAATAGTTGCTGGTATGGAAGTTATTTTTTGTTGCAACCAGGGACTCAAAGGCATCGATAACCCTTGTGAAAATCATTGTAGCCAATGAGAACACACTTCTCTATGTGAACATTGAATTTATGCAGATGATAAGGCATAAGACATGGATAGCACGTAGAGCCAAATGGTTTTAAGGCATAAGACATGGATAGTCCTGTCTCTACTTTCAAAGTTGAACCTCAGATTCGAACTATAAGATTGCAATTGGGAGTTATTCATGTGTAGAAGAAGACTCCAAAAGGTTAAGAGAGAAACATACTCAGTCTGTTATATCTGAAGTCATGAAATCCTGAATTTCGTGCATGCATAAGCCTGTTGTGAGAGTGTTCATGCTATATGAGACTATTTATCTTTAGTTATTTTATTTTATTTTATTTATTTTTAATTTTTTTAAAAATTTATAATAATAAATGGAATGCTGTTTCTCCGATAGATGCATAGTCTTCGTGATATTTAAGCAATCAAACTTCCACTTTTCATGCAGGATTTTGTTACTAGTTCCTCATTATTGAGCTTCCTCAAATTCAAGCTGAAGTTGCAACAACCGGTAAACACATGAACTAAAATTTATCTTCTCTTAAATTAGGAGATAAATCTTTATTATCTTTATTATTCTTTTTAAAAAGAGGATCTTAGGTTTTTTAGGGTTTAAGTGTATTTTTTATTTTTTTTGTTCATTGTAATTTACCAAGTGATTGCTACTTTGAAGTGTGATTTATAACTTCGATTTCTACATGCAAAATAGTATGCTTTAAATTTTTTTACAGCTTTTTTTTTTTCTTTTTGGTAAAATGGCAGCAATCTTGATTCTTTTAATTTAAAAATCTTGGAAAGTTTTATTTTATGAAGATTAAATTTTCAGATTTAACTGCCCTAATTTTATTTATTTATTTATTATTATTATTTTAGTTTGGAAGGTTTTAGAAGTTGTAGAATTGGAAAATTGTTTGGCATTCTATTATGTATTGAAAAGCATTGATTTTATCGAGTATCTCTGTGCTGCTTTTTAAGTCCAAGAACCCCATTTTCCTCAACTTTCTGTTCCGAAAATTGTTTGGAATGAGAAATTGGATAGACAAGATTGTTTATATATGTTTTTTTTTTTTTAAGAAAATCAATTTTGAACTTGATGTGGAACTTTCTGAGTATTTTTGTTCTCATTTTTGTTTTTGTTTTTTTAATATTTTCAGATGAAGGATCAAGTGATAATTCTGAAAGAAGTGAAGTTTAGTGTTCTTGCACAAGACTTTGAAAGCTGTTGTTGA

mRNA sequence

ATGAAACACAAGATTAGAAGCAAGAGCAGCAACACTGATATTATCACACCACGTAATGAGAGGAGCAAATATAGTCACACGGAGTTCATGAAGAAGAAAACACAAGCAGATCAAGTGATGTTTCAACATACACTCAATATTCACCTACTGATTAGTGATCATTGGGAGAAGCCTCCTAATCAGTATCAGAAAACACTTGATTTTGTTACTAGTTCCTCATTATTGAGCTTCCTCAAATTCAAGCTGAAGTTGCAACAACCGATGAAGGATCAAGTGATAATTCTGAAAGAAGTGAAGTTTAGTGTTCTTGCACAAGACTTTGAAAGCTGTTGTTGA

Coding sequence (CDS)

ATGAAACACAAGATTAGAAGCAAGAGCAGCAACACTGATATTATCACACCACGTAATGAGAGGAGCAAATATAGTCACACGGAGTTCATGAAGAAGAAAACACAAGCAGATCAAGTGATGTTTCAACATACACTCAATATTCACCTACTGATTAGTGATCATTGGGAGAAGCCTCCTAATCAGTATCAGAAAACACTTGATTTTGTTACTAGTTCCTCATTATTGAGCTTCCTCAAATTCAAGCTGAAGTTGCAACAACCGATGAAGGATCAAGTGATAATTCTGAAAGAAGTGAAGTTTAGTGTTCTTGCACAAGACTTTGAAAGCTGTTGTTGA

Protein sequence

MKHKIRSKSSNTDIITPRNERSKYSHTEFMKKKTQADQVMFQHTLNIHLLISDHWEKPPNQYQKTLDFVTSSSLLSFLKFKLKLQQPMKDQVIILKEVKFSVLAQDFESCC
Homology
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BLAST of CmaCh18G012570 vs. NCBI nr
Match: KAG6574190.1 (Silicon efflux transporter LSI3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 3.2e-13
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 62  YQKTLDFVTSSSLLSFLKFKLKLQQPMKDQVIILKEVKFSVLAQDFESCC 112
           +++  DFVTSSSLLSFLKFKLKLQQ MKDQVIILKEVKFSVLAQDFESCC
Sbjct: 518 HKRLEDFVTSSSLLSFLKFKLKLQQTMKDQVIILKEVKFSVLAQDFESCC 567

The following BLAST results are available for this feature:
BLAST of CmaCh18G012570 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh18G012570 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh18G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6574190.13.2e-1388.00Silicon efflux transporter LSI3, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh18G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G012570.1CmaCh18G012570.1mRNA