CmaCh18G011470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G011470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	Cma_Chr18: 9238125 .. 9238727 (-)
RNA-Seq Expression	CmaCh18G011470
Synteny	CmaCh18G011470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCCGAGCCAGACCCCTCTGAGCTTTCTTCAGCCCTCGAAACACTAATTCTCAACACAGACGTGTCTCTACTGGCACCCCATTTTCTAGGTTTCGCCACTATGATCCATACAATCGCTCCGCAATCCCCAAATCAAGGAATCGAAACAAACCCCACTTTACCCGACCGGTTCATCTTCTTCAATCCTTTTCTCCATCAATTGATAATGATCCAATCCACTCCTAAGAACAGCCAGCCCCCAGCTTCGAAAGCTTCGATCATAGCCATGCCCTCTGTTCATGTCTCTGCACAAACTGAGTGTGTGATTTGCTTGGATGAGATCGAAGTCGGGGGCGTTGCTAAAGAAATGCCCTGTAACCATAAATTCCATGGCGATTGCATTGAGAAGTGGCTGGAGTTACATGGGTCGTGCCCTGTTTGTAGATATGAGATGCCAGTTGATGATGATGAAGATGAAGGGAAAAAGGTTGAAGATGAAGGGACTGAGAGAATGGGAGAAAGGGAGATTTGGGTGAGTTTTTCCTTTGATAATCCTATGGGAAATCAGGATTCTCTGCAAACTCCTCCAATTGATTCTGATCATTCTTATGTACAGTGA

mRNA sequence

ATGCCTTCCGAGCCAGACCCCTCTGAGCTTTCTTCAGCCCTCGAAACACTAATTCTCAACACAGACGTGTCTCTACTGGCACCCCATTTTCTAGGTTTCGCCACTATGATCCATACAATCGCTCCGCAATCCCCAAATCAAGGAATCGAAACAAACCCCACTTTACCCGACCGGTTCATCTTCTTCAATCCTTTTCTCCATCAATTGATAATGATCCAATCCACTCCTAAGAACAGCCAGCCCCCAGCTTCGAAAGCTTCGATCATAGCCATGCCCTCTGTTCATGTCTCTGCACAAACTGAGTGTGTGATTTGCTTGGATGAGATCGAAGTCGGGGGCGTTGCTAAAGAAATGCCCTGTAACCATAAATTCCATGGCGATTGCATTGAGAAGTGGCTGGAGTTACATGGGTCGTGCCCTGTTTGTAGATATGAGATGCCAGTTGATGATGATGAAGATGAAGGGAAAAAGGTTGAAGATGAAGGGACTGAGAGAATGGGAGAAAGGGAGATTTGGGTGAGTTTTTCCTTTGATAATCCTATGGGAAATCAGGATTCTCTGCAAACTCCTCCAATTGATTCTGATCATTCTTATGTACAGTGA

Coding sequence (CDS)

ATGCCTTCCGAGCCAGACCCCTCTGAGCTTTCTTCAGCCCTCGAAACACTAATTCTCAACACAGACGTGTCTCTACTGGCACCCCATTTTCTAGGTTTCGCCACTATGATCCATACAATCGCTCCGCAATCCCCAAATCAAGGAATCGAAACAAACCCCACTTTACCCGACCGGTTCATCTTCTTCAATCCTTTTCTCCATCAATTGATAATGATCCAATCCACTCCTAAGAACAGCCAGCCCCCAGCTTCGAAAGCTTCGATCATAGCCATGCCCTCTGTTCATGTCTCTGCACAAACTGAGTGTGTGATTTGCTTGGATGAGATCGAAGTCGGGGGCGTTGCTAAAGAAATGCCCTGTAACCATAAATTCCATGGCGATTGCATTGAGAAGTGGCTGGAGTTACATGGGTCGTGCCCTGTTTGTAGATATGAGATGCCAGTTGATGATGATGAAGATGAAGGGAAAAAGGTTGAAGATGAAGGGACTGAGAGAATGGGAGAAAGGGAGATTTGGGTGAGTTTTTCCTTTGATAATCCTATGGGAAATCAGGATTCTCTGCAAACTCCTCCAATTGATTCTGATCATTCTTATGTACAGTGA

Protein sequence

MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFIFFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPCNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDNPMGNQDSLQTPPIDSDHSYVQ

Homology

[Close]

BLAST of CmaCh18G011470 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-30
Identity = 77/186 (41.40%), Postives = 100/186 (53.76%), Query Frame = 0


Query: 8   SELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFIFFNPFLH 67
           +E SS     + N D+ L  P  LGF+        +S N   +   +  +R I  NPF  
Sbjct: 11  TETSSVSGRFLRNRDLYLFLPFLLGFSDQ------ESSNGDDDDVASSRERIILVNPFTQ 70

Query: 68  QLIMIQSTP-------------KNSQPPASKASIIAMPSVHV-SAQTECVICLDEIEVGG 127
            +I+++ +              +  +PPASKASI AMP V +   + ECVICL+E +   
Sbjct: 71  GMIVLEGSSGMNPLLRSLLESREEGRPPASKASIDAMPIVEIDGCEGECVICLEEWKSEE 130

Query: 128 VAKEMPCNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWV 180
             KEMPC H+FHG CIEKWL  HGSCPVCRYEMPVD DE         G +R    EIWV
Sbjct: 131 TVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEMPVDGDE--------IGKKRNDGNEIWV 182

[Close]

BLAST of CmaCh18G011470 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.3e-22
Identity = 56/131 (42.75%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 49  IETNPT-----LPDRF--IFFNPFLHQLI--MIQSTP-KNSQPPASKASIIAMPSVHV-- 108
           IE +P+     +P  F   FF P L QLI  + ++ P +   PPASK++I A+P+V V  
Sbjct: 147 IENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTK 206

Query: 109 ----SAQTECVICLDEIEVGGVAKEMPCNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDE 164
               S   +C +C+DE E G   K+MPC H FH DC+  WLELH SCPVCR+E+P DD +
Sbjct: 207 DMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPD 266

[Close]

BLAST of CmaCh18G011470 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-21
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 71  MIQSTP-KNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPCNHKFHGDCI 130
           + +S P +N  PPA K ++ A+P+V +     C +CLD++EVG  AK+MPC HKFH  CI
Sbjct: 167 LAESDPSRNGTPPAKKEAVEALPTVKIEEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCI 226

Query: 131 EKWLELHGSCPVCRYEMPVDDDEDEGK-----KVEDEGTERMGEREIWVSFSFDNP 181
             WLELH SCPVCR+E+P ++ +D  +     +VED   E   +    VS S + P
Sbjct: 227 LPWLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNRP 282

[Close]

BLAST of CmaCh18G011470 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-20
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 46  NQGIETNPTLPDRFIFFNPFLHQLI--MIQSTP-KNSQPPASKASIIAMPSVHV------ 105
           +QG      + D FI   P L QLI  + ++ P +   PPASK++I A+P V++      
Sbjct: 161 DQGFRLPANIGDYFI--GPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLN 220

Query: 106 SAQTECVICLDEIEVGGVAKEMPCNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGK 164
           S   +C +C+D+ E G  AK+MPC H +H DC+  WLELH SCPVCR+E+P DD + E +
Sbjct: 221 SEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYERR 280

[Close]

BLAST of CmaCh18G011470 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.0e-18
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 61  FFNPFLHQLI--MIQSTPKNSQPPASKASIIAMPSVHV------SAQTECVICLDEIEVG 120
           FF P L +L   +   T +   PPA +++I A+P++ +      S+ + C +C DE E+G
Sbjct: 141 FFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELG 200

Query: 121 GVAKEMPCNHKFHGDCIEKWLELHGSCPVCRYEMP 148
             AK+MPCNH +H DCI  WL  H SCPVCR E+P
Sbjct: 201 SEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 235

[Close]

BLAST of CmaCh18G011470 vs. ExPASy TrEMBL
Match: A0A6J1HTX2 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita maxima OX=3661 GN=LOC111467433 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.0e-113
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI 60
           MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI
Sbjct: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI 60

Query: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC 120
           FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC
Sbjct: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC 120

Query: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDNP 180
           NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDNP
Sbjct: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDNP 180

Query: 181 MGNQDSLQTPPIDSDHSYVQ 201
           MGNQDSLQTPPIDSDHSYVQ
Sbjct: 181 MGNQDSLQTPPIDSDHSYVQ 200

[Close]

BLAST of CmaCh18G011470 vs. ExPASy TrEMBL
Match: A0A6J1G0W4 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111449680 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.8e-90
Identity = 164/173 (94.80%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI 60
           MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHT APQSPNQGIETNPTLPDRFI
Sbjct: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTTAPQSPNQGIETNPTLPDRFI 60

Query: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC 120
           FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVS QT+CVICLDEIEVGG+AKEMPC
Sbjct: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSEQTQCVICLDEIEVGGLAKEMPC 120

Query: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWV 174
           NHKFHGDCIEKWLELHGSCPVCRYEMPV  DEDEGK+VE+EGTERMGEREIW+
Sbjct: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPV--DEDEGKRVENEGTERMGEREIWL 171

[Close]

BLAST of CmaCh18G011470 vs. ExPASy TrEMBL
Match: A0A5D3D3N1 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00370 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.9e-75
Identity = 145/201 (72.14%), Postives = 167/201 (83.08%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNP-TLPDRF 60
           M S PDPS++SSALE L+LN DVSL+AP FLGFA+MI +    S N   E  P TLPDRF
Sbjct: 1   MASPPDPSDISSALERLLLNRDVSLIAPLFLGFASMIRS----SQNHENEPTPTTLPDRF 60

Query: 61  IFFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMP 120
           IFFNPF HQL+++Q+TPK+ QPPASKASI AMPS+ VS  TECVICLDEIEVGG+AK+MP
Sbjct: 61  IFFNPFSHQLMVVQATPKDGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGGLAKQMP 120

Query: 121 CNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDN 180
           CNHKFHG+CI+KWLELHGSCPVCRY+MP+D D DEGKKV DEGTE  GE EIWVSFSFD+
Sbjct: 121 CNHKFHGECIQKWLELHGSCPVCRYQMPIDGD-DEGKKVGDEGTESRGETEIWVSFSFDH 180

Query: 181 PMGNQDSLQTPPIDSDHSYVQ 201
            + N +S+QTP  DSDHSYVQ
Sbjct: 181 SIRNGESVQTPSTDSDHSYVQ 196

[Close]

BLAST of CmaCh18G011470 vs. ExPASy TrEMBL
Match: A0A1S3BFQ2 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103489128 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.9e-75
Identity = 145/201 (72.14%), Postives = 167/201 (83.08%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNP-TLPDRF 60
           M S PDPS++SSALE L+LN DVSL+AP FLGFA+MI +    S N   E  P TLPDRF
Sbjct: 1   MASPPDPSDISSALERLLLNRDVSLIAPLFLGFASMIRS----SQNHENEPTPTTLPDRF 60

Query: 61  IFFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMP 120
           IFFNPF HQL+++Q+TPK+ QPPASKASI AMPS+ VS  TECVICLDEIEVGG+AK+MP
Sbjct: 61  IFFNPFSHQLMVVQATPKDGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGGLAKQMP 120

Query: 121 CNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDN 180
           CNHKFHG+CI+KWLELHGSCPVCRY+MP+D D DEGKKV DEGTE  GE EIWVSFSFD+
Sbjct: 121 CNHKFHGECIQKWLELHGSCPVCRYQMPIDGD-DEGKKVGDEGTESRGETEIWVSFSFDH 180

Query: 181 PMGNQDSLQTPPIDSDHSYVQ 201
            + N +S+QTP  DSDHSYVQ
Sbjct: 181 SIRNGESVQTPSTDSDHSYVQ 196

[Close]

BLAST of CmaCh18G011470 vs. ExPASy TrEMBL
Match: A0A0A0KU18 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G605210 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.6e-75
Identity = 143/201 (71.14%), Postives = 167/201 (83.08%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNP-TLPDRF 60
           M S PDPS+L+SALE L+LN DVSL+AP FLGFA+M+ +    S NQ  +  P TLPDRF
Sbjct: 1   MASPPDPSDLASALERLLLNRDVSLIAPLFLGFASMVRS----SQNQESDPTPTTLPDRF 60

Query: 61  IFFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMP 120
           IFFNPF HQL+++Q+TPK+ QPPASKASI AMPS+ VS  TECVICLDEIEVG +AK+MP
Sbjct: 61  IFFNPFSHQLMVVQATPKHGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGRLAKQMP 120

Query: 121 CNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDN 180
           CNHKFHGDCI+KWLELHGSCPVCRY+MP+D D DEGKKV DEG E  GE EIWVSFSFD+
Sbjct: 121 CNHKFHGDCIQKWLELHGSCPVCRYQMPIDGD-DEGKKVGDEGAESRGETEIWVSFSFDH 180

Query: 181 PMGNQDSLQTPPIDSDHSYVQ 201
            +GN +S+QTP  +SDHSYVQ
Sbjct: 181 SIGNGESVQTPSTESDHSYVQ 196

[Close]

BLAST of CmaCh18G011470 vs. NCBI nr
Match: XP_022968096.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita maxima])

HSP 1 Score: 417.2 bits (1071), Expect = 8.2e-113
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI 60
           MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI
Sbjct: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI 60

Query: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC 120
           FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC
Sbjct: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC 120

Query: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDNP 180
           NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDNP
Sbjct: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDNP 180

Query: 181 MGNQDSLQTPPIDSDHSYVQ 201
           MGNQDSLQTPPIDSDHSYVQ
Sbjct: 181 MGNQDSLQTPPIDSDHSYVQ 200

[Close]

BLAST of CmaCh18G011470 vs. NCBI nr
Match: KAG7013138.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 393.3 bits (1009), Expect = 1.3e-105
Identity = 190/200 (95.00%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI 60
           MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHT APQSPNQGIETNPTLPDRFI
Sbjct: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTTAPQSPNQGIETNPTLPDRFI 60

Query: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC 120
           FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVS QT+CVICLDEIEVGG+AKEMPC
Sbjct: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSEQTQCVICLDEIEVGGLAKEMPC 120

Query: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDNP 180
           NHKFHGDCIEKWLELHGSCPVCRYEMPV  DEDEGK+VE EGTERMGEREIWVSFSFDNP
Sbjct: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPV--DEDEGKRVESEGTERMGEREIWVSFSFDNP 180

Query: 181 MGNQDSLQTPPIDSDHSYVQ 201
           MGNQDSLQTP IDSDHS+VQ
Sbjct: 181 MGNQDSLQTPSIDSDHSHVQ 198

[Close]

BLAST of CmaCh18G011470 vs. NCBI nr
Match: KAG6574079.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 189/200 (94.50%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI 60
           MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHT APQSPNQGIETNPTLPDR I
Sbjct: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTTAPQSPNQGIETNPTLPDRCI 60

Query: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC 120
           FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVS QT+CVICLDEIEVGG+AKEMPC
Sbjct: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSEQTQCVICLDEIEVGGLAKEMPC 120

Query: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDNP 180
           NHKFHGDCIEKWLELHGSCPVCRYEMPV  DEDEGK+VE EGTERMGEREIWVSFSFDNP
Sbjct: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPV--DEDEGKRVESEGTERMGEREIWVSFSFDNP 180

Query: 181 MGNQDSLQTPPIDSDHSYVQ 201
           MGNQDSLQTP IDSDHS+VQ
Sbjct: 181 MGNQDSLQTPSIDSDHSHVQ 198

[Close]

BLAST of CmaCh18G011470 vs. NCBI nr
Match: XP_023541819.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.5 bits (898), Expect = 9.5e-93
Identity = 169/180 (93.89%), Postives = 172/180 (95.56%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI 60
           MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHT APQSPNQGIETNPTLPDRFI
Sbjct: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTTAPQSPNQGIETNPTLPDRFI 60

Query: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC 120
           FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVS QTECVICLDEIEV G+AKEMPC
Sbjct: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSEQTECVICLDEIEVRGLAKEMPC 120

Query: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDNP 180
           NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGK+VEDEGTERMGEREIW+    D P
Sbjct: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKRVEDEGTERMGEREIWLG-KLDTP 179

[Close]

BLAST of CmaCh18G011470 vs. NCBI nr
Match: XP_022945451.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 341.3 bits (874), Expect = 5.7e-90
Identity = 164/173 (94.80%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFI 60
           MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHT APQSPNQGIETNPTLPDRFI
Sbjct: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTTAPQSPNQGIETNPTLPDRFI 60

Query: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPC 120
           FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVS QT+CVICLDEIEVGG+AKEMPC
Sbjct: 61  FFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSEQTQCVICLDEIEVGGLAKEMPC 120

Query: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWV 174
           NHKFHGDCIEKWLELHGSCPVCRYEMPV  DEDEGK+VE+EGTERMGEREIW+
Sbjct: 121 NHKFHGDCIEKWLELHGSCPVCRYEMPV--DEDEGKRVENEGTERMGEREIWL 171

[Close]

BLAST of CmaCh18G011470 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-31
Identity = 77/186 (41.40%), Postives = 100/186 (53.76%), Query Frame = 0


Query: 8   SELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRFIFFNPFLH 67
           +E SS     + N D+ L  P  LGF+        +S N   +   +  +R I  NPF  
Sbjct: 11  TETSSVSGRFLRNRDLYLFLPFLLGFSDQ------ESSNGDDDDVASSRERIILVNPFTQ 70

Query: 68  QLIMIQSTP-------------KNSQPPASKASIIAMPSVHV-SAQTECVICLDEIEVGG 127
            +I+++ +              +  +PPASKASI AMP V +   + ECVICL+E +   
Sbjct: 71  GMIVLEGSSGMNPLLRSLLESREEGRPPASKASIDAMPIVEIDGCEGECVICLEEWKSEE 130

Query: 128 VAKEMPCNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWV 180
             KEMPC H+FHG CIEKWL  HGSCPVCRYEMPVD DE         G +R    EIWV
Sbjct: 131 TVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEMPVDGDE--------IGKKRNDGNEIWV 182

[Close]

BLAST of CmaCh18G011470 vs. TAIR 10
Match: AT5G56340.1 (RING/U-box superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-23
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 40  IAPQSPNQGIETNPTLPDRFIFFNPFLHQLI--MIQSTP-KNSQPPASKASIIAMPSVHV 99
           + P   NQ   +  +L D FI   P L  L+  + ++ P +   PPA K ++ A+P+V +
Sbjct: 196 VVPSDQNQNHPSLTSLGDYFI--GPGLDLLLQHLAENDPNRQGTPPARKEAVEALPTVKI 255

Query: 100 SAQTECVICLDEIEVGGVAKEMPCNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGK 159
               +C +CLD+ E G  AKEMPC HKFH  CI  WLELH SCPVCR+E+P   D+D+  
Sbjct: 256 MEPLQCSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCRFELPSSADDDDET 315

Query: 160 KVEDE 162
           K + E
Sbjct: 316 KTDSE 318

[Close]

BLAST of CmaCh18G011470 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-23
Identity = 56/131 (42.75%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 49  IETNPT-----LPDRF--IFFNPFLHQLI--MIQSTP-KNSQPPASKASIIAMPSVHV-- 108
           IE +P+     +P  F   FF P L QLI  + ++ P +   PPASK++I A+P+V V  
Sbjct: 147 IENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTK 206

Query: 109 ----SAQTECVICLDEIEVGGVAKEMPCNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDE 164
               S   +C +C+DE E G   K+MPC H FH DC+  WLELH SCPVCR+E+P DD +
Sbjct: 207 DMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPD 266

[Close]

BLAST of CmaCh18G011470 vs. TAIR 10
Match: AT1G14200.1 (RING/U-box superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-20
Identity = 64/185 (34.59%), Postives = 83/185 (44.86%), Query Frame = 0


Query: 1   MPSEPDPSELSSALETLI--LNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDR 60
           M SE D  E SS  E +I      +S   P  +  A         S +Q       L  R
Sbjct: 1   MSSENDFVEFSSMFERIIQGRGDGLSRFLPVIVALAAREDDDDQGSTDQTTRRGDPLSPR 60

Query: 61  FIFFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTE-----CVICLDEIEVGG 120
           F+                K  + PA K+ +  MP V +    E     C ICLDE   G 
Sbjct: 61  FVMIGSRSGLDDFFSDGGKQGRSPALKSEVENMPRVVIGEDKEKYGGSCAICLDEWSKGD 120

Query: 121 VAKEMPCNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWV 179
           VA EMPC HKFH  C+E+WL  H +CP+CRYEMPV++ E+E KK+            IW+
Sbjct: 121 VAAEMPCKHKFHSKCVEEWLGRHATCPMCRYEMPVEEVEEE-KKI-----------GIWI 173

[Close]

BLAST of CmaCh18G011470 vs. TAIR 10
Match: AT1G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-20
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 81  PPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPCNHKFHGDCIEKWLELHGSCP 140
           PPA K ++ A+ +V +    +C +CLD+ E+G  AK MPC HKFH DC+  WLELH SCP
Sbjct: 202 PPAKKEAVEALATVKIEETLQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCP 261

Query: 141 VCRYEMPVDD 151
           VCRY++P D+
Sbjct: 262 VCRYQLPADE 271

The following BLAST results are available for this feature:

BLAST of CmaCh18G011470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQX2	1.8e-30	41.40	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ...	[more]
Q8LPN7	5.3e-22	42.75	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q6AVN2	3.5e-21	43.10	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
P0CH30	2.9e-20	41.73	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
O22197	8.0e-18	43.16	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]

BLAST of CmaCh18G011470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HTX2	4.0e-113	100.00	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita maxima OX=3661 GN=LOC1114674...	[more]
A0A6J1G0W4	2.8e-90	94.80	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A5D3D3N1	1.9e-75	72.14	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BFQ2	1.9e-75	72.14	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103489128 P...	[more]
A0A0A0KU18	5.6e-75	71.14	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G605210 P...	[more]

BLAST of CmaCh18G011470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022968096.1	8.2e-113	100.00	E3 ubiquitin-protein ligase RING1-like [Cucurbita maxima]	[more]
KAG7013138.1	1.3e-105	95.00	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]
KAG6574079.1	1.1e-104	94.50	E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023541819.1	9.5e-93	93.89	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022945451.1	5.7e-90	94.80	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]

BLAST of CmaCh18G011470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26800.1	1.3e-31	41.40	RING/U-box superfamily protein	[more]
AT5G56340.1	2.9e-23	42.40	RING/U-box superfamily protein	[more]
AT3G19950.1	3.8e-23	42.75	RING/U-box superfamily protein	[more]
AT1G14200.1	1.0e-20	34.59	RING/U-box superfamily protein	[more]
AT1G55530.1	2.3e-20	52.86	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 102..142 e-value: 8.2E-8 score: 42.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..143 e-value: 3.3E-14 score: 52.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 102..143 score: 12.592549
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 70..149 e-value: 4.8E-21 score: 76.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..200
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 72..157
None	No IPR available	PANTHER	PTHR15710:SF132	E3 UBIQUITIN-PROTEIN LIGASE MPSR1	coord: 72..157
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 101..143 e-value: 1.66171E-18 score: 73.4901
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 89..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G011470.1	CmaCh18G011470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity