CmaCh18G010590 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G010590
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr18: 8787516 .. 8787739 (-)
RNA-Seq ExpressionCmaCh18G010590
SyntenyCmaCh18G010590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATTTGGACCGGGCCGAACCCATTTGAAGCCCAAAAATCTGACCGAAGATAACGTCGACGATGAGTTGTGGACTGTTTCACTTCGGAATCGGCGAGTCAACTCACCATTCAAAGCGGCGGCATCAACTCCATTGTCGATACATCTGAGTTAATCTATTCAAAAATCCACACAGCCCCAGATGGTTGTTCTGCTCTCAGCTTCAGCTTTCGCGATCTCTGA

mRNA sequence

ATGTTATTTGGACCGGGCCGAACCCATTTGAAGCCCAAAAATCTGACCGAAGATAACGTCGACGATGAGTTGTGGACTGTTTCACTTCGGAATCGGCGAGTCAACTCACCATTCAAAGCGGCGGCATCAACTCCATTGTCGATACATCTGACCCCAGATGGTTGTTCTGCTCTCAGCTTCAGCTTTCGCGATCTCTGA

Coding sequence (CDS)

ATGTTATTTGGACCGGGCCGAACCCATTTGAAGCCCAAAAATCTGACCGAAGATAACGTCGACGATGAGTTGTGGACTGTTTCACTTCGGAATCGGCGAGTCAACTCACCATTCAAAGCGGCGGCATCAACTCCATTGTCGATACATCTGACCCCAGATGGTTGTTCTGCTCTCAGCTTCAGCTTTCGCGATCTCTGA

Protein sequence

MLFGPGRTHLKPKNLTEDNVDDELWTVSLRNRRVNSPFKAAASTPLSIHLTPDGCSALSFSFRDL
Homology
[Close]
BLAST of CmaCh18G010590 vs. NCBI nr
Match: KAG6574006.1 (tRNA(adenine(34)) deaminase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-12
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MLFGPGRTHLKPKNLTEDNVDDELWTVSLRNRRVNSPFKA 41
          MLFGPGRTHLKPK+LTEDNVDDE WTVSLRNRRVNSP ++
Sbjct: 1  MLFGPGRTHLKPKDLTEDNVDDEFWTVSLRNRRVNSPIQS 40

[Close]
BLAST of CmaCh18G010590 vs. NCBI nr
Match: KAG7013065.1 (tRNA(adenine(34)) deaminase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-12
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MLFGPGRTHLKPKNLTEDNVDDELWTVSLRNRRVNSPFKA 41
          MLFGPGRTHLKPK+LTEDNVDDE WTVSLRNRRVNSP ++
Sbjct: 1  MLFGPGRTHLKPKDLTEDNVDDEFWTVSLRNRRVNSPIQS 40

The following BLAST results are available for this feature:
BLAST of CmaCh18G010590 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh18G010590 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh18G010590 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6574006.14.5e-1287.50tRNA(adenine(34)) deaminase, chloroplastic, partial [Cucurbita argyrosperma subs... [more]
KAG7013065.14.5e-1287.50tRNA(adenine(34)) deaminase, chloroplastic [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh18G010590 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G010590.1CmaCh18G010590.1mRNA