CmaCh18G010190 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G010190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionLOB domain-containing protein
LocationCma_Chr18: 8518054 .. 8519272 (+)
RNA-Seq ExpressionCmaCh18G010190
SyntenyCmaCh18G010190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATGAGCTGCAATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTTGCCAAATTCTACGGTCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCGAACACCTCCGCCCGGGTAATTCTCACTTTATCATAATTCCTTACCTATGATATCAAATCGGGTTAAGAATCACAAATCTTCACAATGGTATAAAATTATCTACTTTGAGCATAAGCTCTCATGCCTTTGTTGTGGGAAGGTCTCACAGTTTATATTCCTTAGTCATAAATCTATGATTCCTAACACAGTTTGATATTAGAAATTATGGATTTTCACAATGATTGATATTGTCCACTTTGAGCATAATCTTTCGTGACTTTGATTTGGGCTTACCCAAAAAGTCTCGTAACAATGTAAATGTATTATTTACTTATAAACATCATTCCCTAAATTAGGTTGCGTGGACTCCCTCCTAACAATTCTGAACAAGTTTCTTAAATTTTTTGGATTAAAAAATTATATAAAACAGTTAAATTTATTGTTTTTTTTTTCACCCTAAAAAGATTATATTATATAAAGAATTAAAAATACATTTTTTATTAATATGTATGAGGAAATTCAAAATGTTGGTATGTAAAATATATTATATTTATAATTATTTTATTTAATGACATTGAAAATTGTCTGTTTTTAGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGCCGGATGGTGAATCCGGTCTACGGCTCCGTCGGATTGCTCTGTTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTTGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACTAACCTTTCCCTTAAATGTTGCGACATTCGACATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGGAACCGGTTCAAAAAGCCCGACAACCGGACCAAATCCAAACCCGGACCGGGTCGTGAATTGGGAAGTGGGTCGAATGTGGAGGTGATTGAGATAGACCGAATGGCGGATGATTTGATGACGAACCGGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGCATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAA

mRNA sequence

ATGAGAATGAGCTGCAATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTTGCCAAATTCTACGGTCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCGAACACCTCCGCCCGGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGCCGGATGGTGAATCCGGTCTACGGCTCCGTCGGATTGCTCTGTTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTTGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACTAACCTTTCCCTTAAATGTTGCGACATTCGACATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGGAACCGGTTCAAAAAGCCCGACAACCGGACCAAATCCAAACCCGGACCGGGTCGTGAATTGGGAAGTGGGTCGAATGTGGAGGTGATTGAGATAGACCGAATGGCGGATGATTTGATGACGAACCGGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGCATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAA

Coding sequence (CDS)

ATGAGAATGAGCTGCAATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTTGCCAAATTCTACGGTCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCGAACACCTCCGCCCGGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGCCGGATGGTGAATCCGGTCTACGGCTCCGTCGGATTGCTCTGTTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTTGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACTAACCTTTCCCTTAAATGTTGCGACATTCGACATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGGAACCGGTTCAAAAAGCCCGACAACCGGACCAAATCCAAACCCGGACCGGGTCGTGAATTGGGAAGTGGGTCGAATGTGGAGGTGATTGAGATAGACCGAATGGCGGATGATTTGATGACGAACCGGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGCATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAA

Protein sequence

MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ
Homology
BLAST of CmaCh18G010190 vs. ExPASy Swiss-Prot
Match: Q9CA30 (LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.5e-49
Identity = 100/167 (59.88%), Postives = 119/167 (71.26%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MR+SCNGCR+LRKGC+ DC IRPCLQWI S DSQANAT+FLAKFYGRAGL NLI +  +H
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIF+SLLYEACGR+VNPV GSVGL+ SG+W +CQAAVDAVL G  I     P ++ +
Sbjct: 61  LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query: 121 LSL----KCCDIRHVCND--------TNLAVPGELHKGKTR-NRFKK 155
             +    +  DIRHV  D         NLA     +K KT+  RFK+
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKR 167

BLAST of CmaCh18G010190 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-48
Identity = 96/155 (61.94%), Postives = 110/155 (70.97%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCR+LRKGCS DC IRPCL WI SP++QANAT+FLAKFYGRAGL NLI A   H
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVE--PDAPLSN 120
           LRP IF+SLL+EACGR+VNP+YGSVGLL SG+W  CQ AV+AV+ G  + E   DA    
Sbjct: 61  LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query: 121 TNLSLKCCDIRHVCNDTNLAVPG----ELHKGKTR 150
               LK  DIRH+  D N A       +L   KTR
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTR 155

BLAST of CmaCh18G010190 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-47
Identity = 91/135 (67.41%), Postives = 108/135 (80.00%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCR+LRKGCS +C IRPCLQWI S +SQANAT+FLAKFYGRAGL NL+    +H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI--VEPDAPLSN 120
           LRPAIF+SLLYEACGR+VNP+YGSVGLL SG+W  CQAAV+AV+ GS +  +  DA ++ 
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query: 121 --TNLSLKCCDIRHV 132
                + K CDIRHV
Sbjct: 121 QAPPFNNKLCDIRHV 135

BLAST of CmaCh18G010190 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.8e-38
Identity = 69/107 (64.49%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCR+LRKGCS +CI+RPC+QWI SP++Q +AT+F+AKF+GRAGL + I+A  E   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI 110
           PA+F+SLLYEACGR VNPV G+VGLL +G+W+ CQAAV+ VL G  +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSL 107

BLAST of CmaCh18G010190 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-37
Identity = 66/107 (61.68%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCR+LRKGCS +CI+RPC+QWI + D+Q +AT+F+AKF+GRAGL + I+A  +  R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI 110
           PA+F+SLLYEACGR VNPV G++G+L +G+W+ CQAAV+ VL G  +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSL 107

BLAST of CmaCh18G010190 vs. ExPASy TrEMBL
Match: A0A6J1HWX5 (LOB domain-containing protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111467594 PE=3 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 3.4e-126
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120

Query: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEI 180
           LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEI
Sbjct: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEI 180

Query: 181 DRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 220
           DRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ
Sbjct: 181 DRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 219

BLAST of CmaCh18G010190 vs. ExPASy TrEMBL
Match: A0A6J1G195 (LOB domain-containing protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111449763 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 6.7e-122
Identity = 215/221 (97.29%), Postives = 216/221 (97.74%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120

Query: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKS--KPGPGRELGSGSNVEVI 180
           LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPD+R KS  KPGPG ELGSGSNVEVI
Sbjct: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVI 180

Query: 181 EIDRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 220
           EIDRMADDLMTNRRKPGWVLRNGMWVEEE VELELTLNSAQ
Sbjct: 181 EIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 221

BLAST of CmaCh18G010190 vs. ExPASy TrEMBL
Match: A0A5A7SXG6 (LOB domain-containing protein 40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005720 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.4e-81
Identity = 163/230 (70.87%), Postives = 175/230 (76.09%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           M+MSCNGCRILRKGCS DCIIRPCLQWIPS DSQANATIFLAKFYGRAGLFNLITAAA H
Sbjct: 1   MKMSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAHH 60

Query: 61  LRP----------AIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIV 120
           LRP          AIFKSLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM V
Sbjct: 61  LRPVKLSSCCVFLAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNV 120

Query: 121 EPDAPLSNT-NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGREL 180
           EPD P SN  N SLKCCDIRHVCN+ NLA  G+L K K R+RFKKPD+RTKSKPGP  EL
Sbjct: 121 EPDTPPSNNGNFSLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKSKPGPDHEL 180

Query: 181 GSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 220
           G GS+ +                + G  LR+G   E+  VELELTL SAQ
Sbjct: 181 GIGSSSD----------------ESGRDLRSGSRFEKADVELELTLKSAQ 214

BLAST of CmaCh18G010190 vs. ExPASy TrEMBL
Match: A0A0A0KUI0 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609680 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.4e-81
Identity = 159/218 (72.94%), Postives = 172/218 (78.90%), Query Frame = 0

Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCRILRKGCS DCIIRPCLQWIPS DSQANATIFLAKFYGRAGLFNLITAAA+HLR
Sbjct: 1   MSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAQHLR 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNT-NL 122
           PAIFKSLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM VEPD P SN  NL
Sbjct: 61  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPDTPPSNNGNL 120

Query: 123 SLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEID 182
           SLKCCDIRHVCN+ NLA  G+L K K R+RFKKPD+RTK KPGP  +LG GS+      D
Sbjct: 121 SLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKPKPGPDHDLGIGSS-----FD 180

Query: 183 RMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 220
               D+    R          + + + VELELTL SAQ
Sbjct: 181 EAGRDVSNGSR----------FEKADDVELELTLKSAQ 203

BLAST of CmaCh18G010190 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.9e-77
Identity = 153/209 (73.21%), Postives = 168/209 (80.38%), Query Frame = 0

Query: 15  CSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEAC 74
           CS +C+IRPCL+WI SPDSQANATIFLAKFYGRAGLFNLITAA++HLRPAIFKSLLYEAC
Sbjct: 86  CSDECVIRPCLEWISSPDSQANATIFLAKFYGRAGLFNLITAASQHLRPAIFKSLLYEAC 145

Query: 75  GRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCND 134
           GRMVNPVYGSVGLLCSGDWD+CQAAVDAVLTG+M VE +AP SN N  + CCDIRHVC D
Sbjct: 146 GRMVNPVYGSVGLLCSGDWDRCQAAVDAVLTGTMNVETNAPPSNAN--VLCCDIRHVCTD 205

Query: 135 TNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEIDR---MADDLMTNR 194
           TNLA PGE  K K R+RFKKPD+RTK K GP   LGSGSN      +R   M D L  NR
Sbjct: 206 TNLAAPGEPRKVKARSRFKKPDHRTKPKSGPAEILGSGSNWAESGANRQIEMVDALTVNR 265

Query: 195 RKPGWVLRNGMWVEE-EHVELELTLNSAQ 220
            KP  VLR+G   E  ++VELELTLNSAQ
Sbjct: 266 GKPNRVLRHGSRSERVDNVELELTLNSAQ 292

BLAST of CmaCh18G010190 vs. NCBI nr
Match: XP_022968330.1 (LOB domain-containing protein 42-like [Cucurbita maxima])

HSP 1 Score: 460.7 bits (1184), Expect = 7.1e-126
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120

Query: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEI 180
           LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEI
Sbjct: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEI 180

Query: 181 DRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 220
           DRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ
Sbjct: 181 DRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 219

BLAST of CmaCh18G010190 vs. NCBI nr
Match: XP_023542000.1 (LOB domain-containing protein 42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453.0 bits (1164), Expect = 1.5e-123
Identity = 216/219 (98.63%), Postives = 216/219 (98.63%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120

Query: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIEI 180
           LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPG ELGSGSNVEVIEI
Sbjct: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGNELGSGSNVEVIEI 180

Query: 181 DRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 220
           DRMADDLMTNRRKPGWVLRNGMWVEEE V LELTLNSAQ
Sbjct: 181 DRMADDLMTNRRKPGWVLRNGMWVEEEDVALELTLNSAQ 219

BLAST of CmaCh18G010190 vs. NCBI nr
Match: XP_022945568.1 (LOB domain-containing protein 42-like [Cucurbita moschata])

HSP 1 Score: 446.4 bits (1147), Expect = 1.4e-121
Identity = 215/221 (97.29%), Postives = 216/221 (97.74%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120

Query: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKS--KPGPGRELGSGSNVEVI 180
           LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPD+R KS  KPGPG ELGSGSNVEVI
Sbjct: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVI 180

Query: 181 EIDRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 220
           EIDRMADDLMTNRRKPGWVLRNGMWVEEE VELELTLNSAQ
Sbjct: 181 EIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 221

BLAST of CmaCh18G010190 vs. NCBI nr
Match: KAG6573961.1 (LOB domain-containing protein 42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 442.2 bits (1136), Expect = 2.6e-120
Identity = 213/219 (97.26%), Postives = 214/219 (97.72%), Query Frame = 0

Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR
Sbjct: 1   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLS 122
           PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLS
Sbjct: 61  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLS 120

Query: 123 LKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKS--KPGPGRELGSGSNVEVIEI 182
           LKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPD+R KS  KPGPG ELGSGSNVEVIEI
Sbjct: 121 LKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGPGHELGSGSNVEVIEI 180

Query: 183 DRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 220
           DRMADDLMTNRRKPGWVLRNGMWVEEE VELELTLNSAQ
Sbjct: 181 DRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 219

BLAST of CmaCh18G010190 vs. NCBI nr
Match: XP_004135401.1 (LOB domain-containing protein 40 [Cucumis sativus] >KGN52610.2 hypothetical protein Csa_008453 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 4.8e-82
Identity = 161/220 (73.18%), Postives = 174/220 (79.09%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCRILRKGCS DCIIRPCLQWIPS DSQANATIFLAKFYGRAGLFNLITAAA+H
Sbjct: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAQH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNT- 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM VEPD P SN  
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPDTPPSNNG 120

Query: 121 NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIE 180
           NLSLKCCDIRHVCN+ NLA  G+L K K R+RFKKPD+RTK KPGP  +LG GS+     
Sbjct: 121 NLSLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKPKPGPDHDLGIGSS----- 180

Query: 181 IDRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 220
            D    D+    R          + + + VELELTL SAQ
Sbjct: 181 FDEAGRDVSNGSR----------FEKADDVELELTLKSAQ 205

BLAST of CmaCh18G010190 vs. TAIR 10
Match: AT1G68510.1 (LOB domain-containing protein 42 )

HSP 1 Score: 194.9 bits (494), Expect = 6.8e-50
Identity = 100/167 (59.88%), Postives = 119/167 (71.26%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MR+SCNGCR+LRKGC+ DC IRPCLQWI S DSQANAT+FLAKFYGRAGL NLI +  +H
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIF+SLLYEACGR+VNPV GSVGL+ SG+W +CQAAVDAVL G  I     P ++ +
Sbjct: 61  LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query: 121 LSL----KCCDIRHVCND--------TNLAVPGELHKGKTR-NRFKK 155
             +    +  DIRHV  D         NLA     +K KT+  RFK+
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKR 167

BLAST of CmaCh18G010190 vs. TAIR 10
Match: AT3G02550.1 (LOB domain-containing protein 41 )

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-49
Identity = 96/155 (61.94%), Postives = 110/155 (70.97%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCR+LRKGCS DC IRPCL WI SP++QANAT+FLAKFYGRAGL NLI A   H
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVE--PDAPLSN 120
           LRP IF+SLL+EACGR+VNP+YGSVGLL SG+W  CQ AV+AV+ G  + E   DA    
Sbjct: 61  LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query: 121 TNLSLKCCDIRHVCNDTNLAVPG----ELHKGKTR 150
               LK  DIRH+  D N A       +L   KTR
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTR 155

BLAST of CmaCh18G010190 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 )

HSP 1 Score: 191.4 bits (485), Expect = 7.5e-49
Identity = 91/135 (67.41%), Postives = 108/135 (80.00%), Query Frame = 0

Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCR+LRKGCS +C IRPCLQWI S +SQANAT+FLAKFYGRAGL NL+    +H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI--VEPDAPLSN 120
           LRPAIF+SLLYEACGR+VNP+YGSVGLL SG+W  CQAAV+AV+ GS +  +  DA ++ 
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query: 121 --TNLSLKCCDIRHV 132
                + K CDIRHV
Sbjct: 121 QAPPFNNKLCDIRHV 135

BLAST of CmaCh18G010190 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 )

HSP 1 Score: 159.1 bits (401), Expect = 4.1e-39
Identity = 69/107 (64.49%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCR+LRKGCS +CI+RPC+QWI SP++Q +AT+F+AKF+GRAGL + I+A  E   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI 110
           PA+F+SLLYEACGR VNPV G+VGLL +G+W+ CQAAV+ VL G  +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSL 107

BLAST of CmaCh18G010190 vs. TAIR 10
Match: AT5G67420.1 (LOB domain-containing protein 37 )

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-38
Identity = 66/107 (61.68%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCR+LRKGCS +CI+RPC+QWI + D+Q +AT+F+AKF+GRAGL + I+A  +  R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI 110
           PA+F+SLLYEACGR VNPV G++G+L +G+W+ CQAAV+ VL G  +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSL 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9CA309.5e-4959.88LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 S... [more]
Q9M8861.6e-4861.94LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 S... [more]
Q9ZW961.1e-4767.41LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 S... [more]
Q9SN235.8e-3864.49LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 S... [more]
Q9FN112.9e-3761.68LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 S... [more]
Match NameE-valueIdentityDescription
A0A6J1HWX53.4e-126100.00LOB domain-containing protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC11146759... [more]
A0A6J1G1956.7e-12297.29LOB domain-containing protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111449... [more]
A0A5A7SXG63.4e-8170.87LOB domain-containing protein 40-like OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0KUI03.4e-8172.94LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609680 PE=3 SV... [more]
A0A6J1DAV93.9e-7773.21uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
XP_022968330.17.1e-126100.00LOB domain-containing protein 42-like [Cucurbita maxima][more]
XP_023542000.11.5e-12398.63LOB domain-containing protein 42-like [Cucurbita pepo subsp. pepo][more]
XP_022945568.11.4e-12197.29LOB domain-containing protein 42-like [Cucurbita moschata][more]
KAG6573961.12.6e-12097.26LOB domain-containing protein 42, partial [Cucurbita argyrosperma subsp. sororia... [more]
XP_004135401.14.8e-8273.18LOB domain-containing protein 40 [Cucumis sativus] >KGN52610.2 hypothetical prot... [more]
Match NameE-valueIdentityDescription
AT1G68510.16.8e-5059.88LOB domain-containing protein 42 [more]
AT3G02550.11.2e-4961.94LOB domain-containing protein 41 [more]
AT1G67100.17.5e-4967.41LOB domain-containing protein 40 [more]
AT3G49940.14.1e-3964.49LOB domain-containing protein 38 [more]
AT5G67420.12.0e-3861.68LOB domain-containing protein 37 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 4..103
e-value: 5.7E-23
score: 81.4
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 3..109
score: 16.142799
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..174
NoneNo IPR availablePANTHERPTHR31304:SF48LOB DOMAIN-CONTAINING PROTEIN 41-LIKEcoord: 1..182
NoneNo IPR availablePANTHERPTHR31304LOB DOMAIN-CONTAINING PROTEIN 38coord: 1..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G010190.1CmaCh18G010190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane