CmaCh18G009250 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G009250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	UDP-glycosyltransferase family protein
Location	Cma_Chr18: 7927818 .. 7929452 (+)
RNA-Seq Expression	CmaCh18G009250
Synteny	CmaCh18G009250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGAGACGACTCCGGCTTTGGTGGTCTCGGCTTCACTATGTTCAGTGACCGCTCTCTTTCGAGGTGAAATCTTAAGCAGCACCAGGAGCAAGGCAATGTGTCGTCTGATTGCTTTATCTCGCGTTCTCGATCAAACCTGGTTTGATCGCTACTGGTTTGCGTTTAGAAGGAGAGCGTTCTTCGTTTTTTGCTGGCTTTTCGTTGCTCGTGTTGTCCATTGTTTTGTTGTTTCTGGAGAGTCAGATGACTTCGGTGTTCTTGCCGCAGAGGATTCCTCGGAGGTTCATAGAAGGTAATGATCTCGATCGATTGCGCTTGGAGGATCGTTTTGGTTATCAGAAATCGAAGCTTGCTCTGGTGAGTGTTCGAGTTCCGAATCTTTCTTGCATTCTCAAGTTATGGTTTAATTAGTCACTCGAATGAACTTATCTGACAATGAATTGAGTTACATGCTCCACTATCCATTTCTATGTCTTCTGTCTTGGAAGACGAATTCAAACTAATATCATCGCTAGGTTTGGAATAATAGAATGTGTTGATTCGTTTATTTGCTTTCTGAAAGAAATTATTTGTACGACTTTCTAATTAGAGCGATATGCATACCTCTAGTGCAATGATAAATCGAACGTTTATATGACTAATGTACCCTGCCTTAAGACTTCTAAGTAATTCATAGATTGAGCTCTATGGCTTTGCTGATGGTATTGATCTTTTAAGTGACTGAGCCGGAAGTTACGAGCACCTACAGAAACGAAGGTATATCTTTTCGAGGTGGTGATTAACGCATCACTGCGATGCAGTTCTTATATTACACTATATCATCTAAACTGGCTAACTGCACTACAAAGTAGCTATCTCAATCAGATTGAAACTATTGTTGTCGATTTCGACAATAAGACATCAGAAACTTCTTACCGAACTCTCGGATCCGAAGCCTTTTATGAACTGCTTGTATCTTCATTGTTCTAAGTGCTTCTTAAACGATACACACGAGCATGCACTGGATTTAACCGATACAATCTTTTTTTCCTTTGACAGTAAAGTTGCATTAAAAATGAAATCCTGTTTTTAGAATATATAGTCATGAATTTTGACCTTTGAGGCATGGAAGAACTGTAGGTGAAAAACTTCGAATGACATGATAGATACAGTTAATGGAAATGAACTGTGGATTCCGGTGTGCGCCTATCCCACTGTTCCTACTGTGATCATCTGCCAATAATATCATCAATTTGGAATTGATATGTTTTTGCGTTTATATAAATATTATAAGCTGACGGAGTTTTCACTTTCGACTCCATGCTGATAATTAGTTGCTTTCCATACAGCGTTCACTGTTTTGTTTTCCAATCTATAAGATTGTGTCATAGTGACTGAGTACTATTGGCTTGTAGAGATTCACAATCCTGTTCTTAATTACTGGCAATGAAGAACATGAAGAAGCTTGGATGTGTTTGAGGTGAGGTATTTGACATTGCTTTTGTTACTCGTATTGCATAATTGATTTTTATTTGCTCAAATAGCATAGTGTAAGAAGGCACATGATAAATTGTTCTCTTGGCATATTCCGCGAGACAGGGTATGGATGTGTCGTTGAAGCATCTGAGACTCATCGAATTTGAGGAACA

mRNA sequence

ATGGCGACGGAGACGACTCCGGCTTTGGTGGTCTCGGCTTCACTATGTTCAGTGACCGCTCTCTTTCGAGGTGAAATCTTAAGCAGCACCAGGAGCAAGGCAATGTGTCGTCTGATTGCTTTATCTCGCGTTCTCGATCAAACCTGGTTTGATCGCTACTGTCAGATGACTTCGGTGTTCTTGCCGCAGAGGATTCCTCGGAGGTTCATAGAAGGTAATGATCTCGATCGATTGCGCTTGGAGGATCGTTTTGGTTATCAGAAATCGAAGCTTGCTCTGAGATTCACAATCCTGTTCTTAATTACTGGCAATGAAGAACATGAAGAAGCTTGGATGTGTTTGAGGGTATGGATGTGTCGTTGAAGCATCTGAGACTCATCGAATTTGAGGAACA

Coding sequence (CDS)

ATGGCGACGGAGACGACTCCGGCTTTGGTGGTCTCGGCTTCACTATGTTCAGTGACCGCTCTCTTTCGAGGTGAAATCTTAAGCAGCACCAGGAGCAAGGCAATGTGTCGTCTGATTGCTTTATCTCGCGTTCTCGATCAAACCTGGTTTGATCGCTACTGTCAGATGACTTCGGTGTTCTTGCCGCAGAGGATTCCTCGGAGGTTCATAGAAGGTAATGATCTCGATCGATTGCGCTTGGAGGATCGTTTTGGTTATCAGAAATCGAAGCTTGCTCTGAGATTCACAATCCTGTTCTTAATTACTGGCAATGAAGAACATGAAGAAGCTTGGATGTGTTTGAGGGTATGGATGTGTCGTTGA

Protein sequence

MATETTPALVVSASLCSVTALFRGEILSSTRSKAMCRLIALSRVLDQTWFDRYCQMTSVFLPQRIPRRFIEGNDLDRLRLEDRFGYQKSKLALRFTILFLITGNEEHEEAWMCLRVWMCR

Homology

[Close]

BLAST of CmaCh18G009250 vs. ExPASy TrEMBL
Match: A0A0A0KRJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622800 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 54/140 (38.57%), Postives = 62/140 (44.29%), Query Frame = 0


Query: 6   TPALVVSASLCSVTALFRGEILSSTRSKAMCRLIALSRVLDQT----------------- 65
           T  LVVSAS  +   LFR  I SS R+KAMC  I L RVLDQT                 
Sbjct: 2   TTVLVVSASYRTENDLFRSGISSSIRNKAMCPQIVLLRVLDQTSAGLIVATGSRSVGDRS 61

Query: 66  -------------WFDRYCQMTSVFL----------------------PQRIPRRFIEGN 94
                         F     MTSVFL                      PQRIPR+FIEGN
Sbjct: 62  SFSLVLLCELFVVTFYLESLMTSVFLKRSEKAWSCDAELKLGMMLKFAPQRIPRKFIEGN 121

[Close]

BLAST of CmaCh18G009250 vs. ExPASy TrEMBL
Match: A0A6J1CCB0 (uncharacterized protein LOC111010187 OS=Momordica charantia OX=3673 GN=LOC111010187 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 56  MTSVFLPQRIPRRFIEGNDLDRLRLEDRFGYQKSKLAL 94
           MT  F+PQRIPRRFIEGN+LDR+R ED  G +K +LAL
Sbjct: 114 MTLKFVPQRIPRRFIEGNELDRMRSEDHRGVRKPRLAL 151

[Close]

BLAST of CmaCh18G009250 vs. ExPASy TrEMBL
Match: A0A6J1JVU1 (uncharacterized protein LOC111489326 OS=Cucurbita maxima OX=3661 GN=LOC111489326 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 57  TSVFLPQRIPRRFIEGNDLDRLRLEDRFGYQKSKLAL 94
           T  F+PQRIPR+FIEGN++DRL LED  G++K +LAL
Sbjct: 115 TLKFVPQRIPRKFIEGNEVDRLHLEDHVGFRKPRLAL 151

[Close]

BLAST of CmaCh18G009250 vs. ExPASy TrEMBL
Match: A0A1S4DWD8 (uncharacterized protein LOC103489564 OS=Cucumis melo OX=3656 GN=LOC103489564 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 56 MTSVFLPQRIPRRFIEGNDLDRLRLEDRFGYQKSKLAL 94
          MT  F PQRIPR+FIEGN++DRL  ++RFG++K +LAL
Sbjct: 1  MTLKFAPQRIPRKFIEGNEVDRLHSDNRFGFRKPRLAL 38

[Close]

BLAST of CmaCh18G009250 vs. ExPASy TrEMBL
Match: A0A5D3CBN1 (UDP-glycosyltransferase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002250 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 56  MTSVFLPQRIPRRFIEGNDLDRLRLEDRFGYQKSKLAL 94
           MT  F PQRIPR+FIEGN++DRL  ++RFG++K +LAL
Sbjct: 114 MTLKFAPQRIPRKFIEGNEVDRLHSDNRFGFRKPRLAL 151

[Close]

BLAST of CmaCh18G009250 vs. NCBI nr
Match: KAG6573863.1 (hypothetical protein SDJN03_27750, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 9.0e-14
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MATETTPALVVSASLCSVTALFRGEILSSTRSKAMCRLIALSRVLDQTWFDRY 54
          MATE TP  VVSASL SVTALFRGEILSSTRSKAMCRLIALSRVLDQTW DRY
Sbjct: 1  MATEMTPDSVVSASLRSVTALFRGEILSSTRSKAMCRLIALSRVLDQTWLDRY 53

[Close]

BLAST of CmaCh18G009250 vs. NCBI nr
Match: KAE8648856.1 (hypothetical protein Csa_008483, partial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 54/140 (38.57%), Postives = 62/140 (44.29%), Query Frame = 0


Query: 6   TPALVVSASLCSVTALFRGEILSSTRSKAMCRLIALSRVLDQT----------------- 65
           T  LVVSAS  +   LFR  I SS R+KAMC  I L RVLDQT                 
Sbjct: 2   TTVLVVSASYRTENDLFRSGISSSIRNKAMCPQIVLLRVLDQTSAGLIVATGSRSVGDRS 61

Query: 66  -------------WFDRYCQMTSVFL----------------------PQRIPRRFIEGN 94
                         F     MTSVFL                      PQRIPR+FIEGN
Sbjct: 62  SFSLVLLCELFVVTFYLESLMTSVFLKRSEKAWSCDAELKLGMMLKFAPQRIPRKFIEGN 121

[Close]

BLAST of CmaCh18G009250 vs. NCBI nr
Match: XP_022139219.1 (uncharacterized protein LOC111010187 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 56  MTSVFLPQRIPRRFIEGNDLDRLRLEDRFGYQKSKLAL 94
           MT  F+PQRIPRRFIEGN+LDR+R ED  G +K +LAL
Sbjct: 114 MTLKFVPQRIPRRFIEGNELDRMRSEDHRGVRKPRLAL 151

[Close]

BLAST of CmaCh18G009250 vs. NCBI nr
Match: XP_038891990.1 (uncharacterized protein LOC120081305 [Benincasa hispida] >XP_038891991.1 uncharacterized protein LOC120081305 [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 56  MTSVFLPQRIPRRFIEGNDLDRLRLEDRFGYQKSKLAL 94
           MT  F+PQRIPR+FIEGN +DR   EDRFG++K +LAL
Sbjct: 114 MTLKFVPQRIPRKFIEGNKVDRSHSEDRFGFRKPRLAL 151

[Close]

BLAST of CmaCh18G009250 vs. NCBI nr
Match: XP_008447017.2 (PREDICTED: uncharacterized protein LOC103489564 [Cucumis melo] >XP_016900299.1 PREDICTED: uncharacterized protein LOC103489564 [Cucumis melo])

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-04
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 56 MTSVFLPQRIPRRFIEGNDLDRLRLEDRFGYQKSKLAL 94
          MT  F PQRIPR+FIEGN++DRL  ++RFG++K +LAL
Sbjct: 1  MTLKFAPQRIPRKFIEGNEVDRLHSDNRFGFRKPRLAL 38

The following BLAST results are available for this feature:

BLAST of CmaCh18G009250 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh18G009250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRJ4	1.8e-07	38.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622800 PE=4 SV=1	[more]
A0A6J1CCB0	1.1e-04	68.42	uncharacterized protein LOC111010187 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1JVU1	1.4e-04	64.86	uncharacterized protein LOC111489326 OS=Cucurbita maxima OX=3661 GN=LOC111489326...	[more]
A0A1S4DWD8	1.4e-04	63.16	uncharacterized protein LOC103489564 OS=Cucumis melo OX=3656 GN=LOC103489564 PE=...	[more]
A0A5D3CBN1	1.4e-04	63.16	UDP-glycosyltransferase family protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of CmaCh18G009250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573863.1	9.0e-14	90.57	hypothetical protein SDJN03_27750, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8648856.1	3.7e-07	38.57	hypothetical protein Csa_008483, partial [Cucumis sativus]	[more]
XP_022139219.1	2.2e-04	68.42	uncharacterized protein LOC111010187 [Momordica charantia]	[more]
XP_038891990.1	2.2e-04	65.79	uncharacterized protein LOC120081305 [Benincasa hispida] >XP_038891991.1 unchara...	[more]
XP_008447017.2	2.9e-04	63.16	PREDICTED: uncharacterized protein LOC103489564 [Cucumis melo] >XP_016900299.1 P...	[more]

BLAST of CmaCh18G009250 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G009250.1	CmaCh18G009250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity