Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATAAATAAGGGACTTCAGACCCTCCATTTCCACGCATCAAAAGCTGCTCAGCAATGGCCACTACCAGGGCGATCGGTTTGTTGTTGTTGTTGTTGGTTTTGTTAATGGTGGACTTAACTTTTGCTGCTAGATTCTTGAAGGGCTATGGAGGAAATGGCGGCGGAGGCGAAGAAGGGTCGGGACCTTTGTCAGGTTCGGGATATGGTTCGGGTAATGGCACTGGATATGGCGATGAAGGCTATGGGCAGTATGGGAGTGGTGGTGCAAATGGAACCGGTGTTGGCCGCGGGTTTGGGTCGGGAAGTGGGTCCGGGTATGGGTCTGTTGGTGCAGCAGGCCCTAGTGAAGGAGGTGGCGAAGGCGGCGGTAGAGGTGGAGGTGGAGGCTCCGGTTTCGGAAGTGGGTGGGGATATGGCTCGGGATATGGAAGTGGGGGTGGCTATGGAAGCGGAGGGGGTGGAGGTGGTGGCGGTGGCGGTGGCGGAGGAGGCGGTGGTGGCAGTGCAGGAGGAATGGCGGGAGGATCCGGAAATGATTCTGGATCATGGGTCGGGTTATGGGTCTGGATATGGAGGAGGGGATGA
mRNA sequence
ATGACTATAAATAAGGGACTTCAGACCCTCCATTTCCACGCATCAAAAGCTGCTCAGCAATGGCCACTACCAGGGCGATCGGGCTATGGAGGAAATGGCGGCGGAGGCGAAGAAGGGTCGGGACCTTTGTCAGGTTCGGGATATGGTTCGGGTAATGGCACTGGATATGGCGATGAAGGCTATGGGCAGTATGGGAGTGGTGGTGCAAATGGAACCGGTGTTGGCCGCGGGTTTGGGTCGGGAAGTGGGTCCGGGTATGGGTCTGTTGGTGCAGCAGGCCCTAGTGAAGGAGGTGGCGAAGGCGGCGGTAGAGGTGGAGGTGGAGGCTCCGGTTTCGGAAGTGGGTGGGGATATGGCTCGGGATATGGAAGTGGGGGTGGCTATGGAAGCGGAGGGGGTGGAGGTGGTGGCGGTGGCGGTGGCGGAGGAGGCGGTGGTGGCAGTGCAGGAGGAATGGCGGGAGGATCCGGAAATGATTCTGGATCATGGGTCGGGTTATGGGTCTGGATATGGAGGAGGGGATGA
Coding sequence (CDS)
ATGACTATAAATAAGGGACTTCAGACCCTCCATTTCCACGCATCAAAAGCTGCTCAGCAATGGCCACTACCAGGGCGATCGGGCTATGGAGGAAATGGCGGCGGAGGCGAAGAAGGGTCGGGACCTTTGTCAGGTTCGGGATATGGTTCGGGTAATGGCACTGGATATGGCGATGAAGGCTATGGGCAGTATGGGAGTGGTGGTGCAAATGGAACCGGTGTTGGCCGCGGGTTTGGGTCGGGAAGTGGGTCCGGGTATGGGTCTGTTGGTGCAGCAGGCCCTAGTGAAGGAGGTGGCGAAGGCGGCGGTAGAGGTGGAGGTGGAGGCTCCGGTTTCGGAAGTGGGTGGGGATATGGCTCGGGATATGGAAGTGGGGGTGGCTATGGAAGCGGAGGGGGTGGAGGTGGTGGCGGTGGCGGTGGCGGAGGAGGCGGTGGTGGCAGTGCAGGAGGAATGGCGGGAGGATCCGGAAATGATTCTGGATCATGGGTCGGGTTATGGGTCTGGATATGGAGGAGGGGATGA
Protein sequence
MTINKGLQTLHFHASKAAQQWPLPGRSGYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYGSVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGGGGGGSAGGMAGGSGNDSGSWVGLWVWIWRRG
Homology
BLAST of CmaCh18G009210 vs. ExPASy TrEMBL
Match:
A0A6J1HWR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111467358 PE=4 SV=1)
HSP 1 Score: 207.6 bits (527), Expect = 4.2e-50
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query: 28 GYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYG 87
GYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYG
Sbjct: 30 GYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYG 89
Query: 88 SVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGGGGGG 147
SVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGGGGGG
Sbjct: 90 SVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGGGGGG 149
Query: 148 SAGGMAGGSGNDSGSWVGLWVWIWRRG 175
SAGGMAGGSGNDSGSWVGLWVWIWRRG
Sbjct: 150 SAGGMAGGSGNDSGSWVGLWVWIWRRG 176
BLAST of CmaCh18G009210 vs. ExPASy TrEMBL
Match:
A0A6J1G1W4 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111449905 PE=4 SV=1)
HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 141/149 (94.63%), Postives = 141/149 (94.63%), Query Frame = 0
Query: 28 GYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYG 87
GYGGNGGGG EGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSG GYG
Sbjct: 32 GYGGNGGGGGEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGFGYG 91
Query: 88 SVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGSG--GGGGGGGGGGGGGG 147
SVGAAGP EGGGEGGG GGGGGSGFGSGWGYGSGYGSGGGYGSG GGGGGGGGGGGGGG
Sbjct: 92 SVGAAGPGEGGGEGGGGGGGGGSGFGSGWGYGSGYGSGGGYGSGGSGGGGGGGGGGGGGG 151
Query: 148 GGSAGGMAGGSGNDSGSWVGLWVWIWRRG 175
GGSAGGM GGSGN SGSWVGLWVWIWRRG
Sbjct: 152 GGSAGGMTGGSGNGSGSWVGLWVWIWRRG 180
BLAST of CmaCh18G009210 vs. ExPASy TrEMBL
Match:
A0A6J1JQB8 (putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111487374 PE=4 SV=1)
HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12
Identity = 108/167 (64.67%), Postives = 110/167 (65.87%), Query Frame = 0
Query: 25 GRSGYGGNGGGGEEGSGPLSGSGYGSGNGTG------------YGDEGYGQYGSGG---- 84
G G G GGGG EGS P SGSGYGSG G+G YGDEGYG YGSGG
Sbjct: 32 GGGGGSGGGGGGGEGSRPWSGSGYGSGYGSGYGSGYGDGGYPRYGDEGYGPYGSGGGGGG 91
Query: 85 ----------ANGTGVGRGFGSGSGSGYGSVGAAGPSEGGGEGGGR--GGGGGSGFGSGW 144
ANG G G+GFGSGSGSGYGS G G GGG GGGR GGGGGSG GSG
Sbjct: 92 GGGGGGGGGSANGAGYGQGFGSGSGSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGS 151
Query: 145 GYGSGYGSGGGYGSGG--GGGGGGGGGGGGGGGSAGGMAGGSGNDSG 162
GYGSGYGSGGGYGSGG GGGGGGGGGGGGGGG GM GGSG SG
Sbjct: 152 GYGSGYGSGGGYGSGGGRGGGGGGGGGGGGGGGGGEGMGGGSGYGSG 198
BLAST of CmaCh18G009210 vs. ExPASy TrEMBL
Match:
A0A1S3BGF1 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489565 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 102/168 (60.71%), Postives = 103/168 (61.31%), Query Frame = 0
Query: 25 GRSGYGGNGGGGEEGSGPLSGSGYGSGNGTG-------------YGDEGYGQYG--SGGA 84
G G GG GGGGE GP GSGYGSG G+G YGDEGYG YG SGG
Sbjct: 33 GGGGSGGGGGGGEGSGGPWPGSGYGSGYGSGYGSGYGGEEGYSRYGDEGYGPYGRYSGGG 92
Query: 85 NGTG--------------VGRGFGSGSGSGYGSVGAAGPSEGGGEGGGRGGGGGSGFGSG 144
G G GRGFG G GSGYGS G G GGG G G GGGGGSG GSG
Sbjct: 93 GGGGGGGGGGGGSAIGAEYGRGFGMGGGSGYGSGGGVGRGGGGGGGSGGGGGGGSGVGSG 152
Query: 145 WGYGSGYGSGGGYGSGGGGGGGG--GGGGGGGGGSAGGMAGGSGNDSG 162
GYGSGYGSGGGYGSGGG GGGG GGGGGGGGG GGM GGSG SG
Sbjct: 153 SGYGSGYGSGGGYGSGGGRGGGGGVGGGGGGGGGGGGGMGGGSGYGSG 200
BLAST of CmaCh18G009210 vs. ExPASy TrEMBL
Match:
A0A0A0KUV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 101/168 (60.12%), Postives = 105/168 (62.50%), Query Frame = 0
Query: 25 GRSGYGGNGGGGEEGSGPLSGSGYGSGNGTGY-----GDEGYGQYG-----------SGG 84
G G G GGGG EGSGP SGSGYGSG G+GY G+EGY +YG SGG
Sbjct: 28 GYGGGSGGGGGGGEGSGPWSGSGYGSGYGSGYGSGYGGEEGYSRYGDEGRYGPYGPYSGG 87
Query: 85 ANGTG--------------VGRGFGSGSGSGYGSVGAAGPSEGGGEGGGRGGGGGSGFGS 144
G G GRGFG+GSGSGYGS G G GGG G G GGGGGSG GS
Sbjct: 88 GGGGGGGGGGGGGSAIGAEYGRGFGAGSGSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGS 147
Query: 145 GWGYGSGYGSGGGYGSGGG-GGGGGGGGGGGGGGSAGGMAGGSGNDSG 162
G GYGSGYGSGGGYGSGGG GGGGGGGGGGGGGGS G GSG G
Sbjct: 148 GSGYGSGYGSGGGYGSGGGRGGGGGGGGGGGGGGSGYGSGYGSGYGGG 195
BLAST of CmaCh18G009210 vs. NCBI nr
Match:
XP_022967988.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])
HSP 1 Score: 207.6 bits (527), Expect = 8.6e-50
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query: 28 GYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYG 87
GYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYG
Sbjct: 30 GYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYG 89
Query: 88 SVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGGGGGG 147
SVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGGGGGG
Sbjct: 90 SVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGGGGGG 149
Query: 148 SAGGMAGGSGNDSGSWVGLWVWIWRRG 175
SAGGMAGGSGNDSGSWVGLWVWIWRRG
Sbjct: 150 SAGGMAGGSGNDSGSWVGLWVWIWRRG 176
BLAST of CmaCh18G009210 vs. NCBI nr
Match:
XP_023542045.1 (glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 190.3 bits (482), Expect = 1.4e-44
Identity = 139/147 (94.56%), Postives = 140/147 (95.24%), Query Frame = 0
Query: 28 GYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYG 87
GYGGNGGGG EGSGPLSGSGYGSGNGTGYGDEGYGQ+GSGGANGTGVGRGFGSGSGSGYG
Sbjct: 32 GYGGNGGGGGEGSGPLSGSGYGSGNGTGYGDEGYGQHGSGGANGTGVGRGFGSGSGSGYG 91
Query: 88 SVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGGGGGG 147
SVGAAGP EGGGEGGG GGGGGSGFGSGWGYGSGYGSGGGYGS GGGGGGGGGGGGGG
Sbjct: 92 SVGAAGPGEGGGEGGGGGGGGGSGFGSGWGYGSGYGSGGGYGS---GGGGGGGGGGGGGG 151
Query: 148 SAGGMAGGSGNDSGSWVGLWVWIWRRG 175
SAGGMAGGSG DSGSWVGLWVWIWRRG
Sbjct: 152 SAGGMAGGSGKDSGSWVGLWVWIWRRG 175
BLAST of CmaCh18G009210 vs. NCBI nr
Match:
XP_022945760.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])
HSP 1 Score: 189.1 bits (479), Expect = 3.2e-44
Identity = 141/149 (94.63%), Postives = 141/149 (94.63%), Query Frame = 0
Query: 28 GYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYG 87
GYGGNGGGG EGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSG GYG
Sbjct: 32 GYGGNGGGGGEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGFGYG 91
Query: 88 SVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGSG--GGGGGGGGGGGGGG 147
SVGAAGP EGGGEGGG GGGGGSGFGSGWGYGSGYGSGGGYGSG GGGGGGGGGGGGGG
Sbjct: 92 SVGAAGPGEGGGEGGGGGGGGGSGFGSGWGYGSGYGSGGGYGSGGSGGGGGGGGGGGGGG 151
Query: 148 GGSAGGMAGGSGNDSGSWVGLWVWIWRRG 175
GGSAGGM GGSGN SGSWVGLWVWIWRRG
Sbjct: 152 GGSAGGMTGGSGNGSGSWVGLWVWIWRRG 180
BLAST of CmaCh18G009210 vs. NCBI nr
Match:
KAG6573859.1 (hypothetical protein SDJN03_27746, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 181.8 bits (460), Expect = 5.1e-42
Identity = 138/146 (94.52%), Postives = 138/146 (94.52%), Query Frame = 0
Query: 28 GYGGNGGGGEEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGSGYG 87
GYGGNGGGG EGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSG GYG
Sbjct: 32 GYGGNGGGGGEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGFGYG 91
Query: 88 SVGAAGPSEGGGEGGGRGGGGGSGFGSGWGYGSGYGSGGGYGS---GGGGGGGGGGGGGG 147
SVGAAGP EGGGEGGG GGGGGSGFGSGWGYGSGYGSGGGYGS GGGGGGGGGGGGGG
Sbjct: 92 SVGAAGPGEGGGEGGGGGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGGGGGG 151
Query: 148 GGGSAGGMAGGSGNDSGSWVGLWVWI 171
GGGSAGGM GGSGNDSGSWVGLWVWI
Sbjct: 152 GGGSAGGMTGGSGNDSGSWVGLWVWI 177
BLAST of CmaCh18G009210 vs. NCBI nr
Match:
XP_022990525.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita maxima])
HSP 1 Score: 82.0 bits (201), Expect = 5.5e-12
Identity = 108/167 (64.67%), Postives = 110/167 (65.87%), Query Frame = 0
Query: 25 GRSGYGGNGGGGEEGSGPLSGSGYGSGNGTG------------YGDEGYGQYGSGG---- 84
G G G GGGG EGS P SGSGYGSG G+G YGDEGYG YGSGG
Sbjct: 32 GGGGGSGGGGGGGEGSRPWSGSGYGSGYGSGYGSGYGDGGYPRYGDEGYGPYGSGGGGGG 91
Query: 85 ----------ANGTGVGRGFGSGSGSGYGSVGAAGPSEGGGEGGGR--GGGGGSGFGSGW 144
ANG G G+GFGSGSGSGYGS G G GGG GGGR GGGGGSG GSG
Sbjct: 92 GGGGGGGGGSANGAGYGQGFGSGSGSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGS 151
Query: 145 GYGSGYGSGGGYGSGG--GGGGGGGGGGGGGGGSAGGMAGGSGNDSG 162
GYGSGYGSGGGYGSGG GGGGGGGGGGGGGGG GM GGSG SG
Sbjct: 152 GYGSGYGSGGGYGSGGGRGGGGGGGGGGGGGGGGGEGMGGGSGYGSG 198
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1HWR8 | 4.2e-50 | 100.00 | glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... | [more] |
A0A6J1G1W4 | 1.5e-44 | 94.63 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
A0A6J1JQB8 | 2.6e-12 | 64.67 | putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661... | [more] |
A0A1S3BGF1 | 1.4e-08 | 60.71 | glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
A0A0A0KUV7 | 1.5e-07 | 60.12 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_022967988.1 | 8.6e-50 | 100.00 | glycine-rich cell wall structural protein 2-like [Cucurbita maxima] | [more] |
XP_023542045.1 | 1.4e-44 | 94.56 | glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022945760.1 | 3.2e-44 | 94.63 | glycine-rich cell wall structural protein 2-like [Cucurbita moschata] | [more] |
KAG6573859.1 | 5.1e-42 | 94.52 | hypothetical protein SDJN03_27746, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022990525.1 | 5.5e-12 | 64.67 | putative glycine-rich cell wall structural protein 1 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |