CmaCh18G005730 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G005730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Reverse transcriptase
Location	Cma_Chr18: 3867334 .. 3867780 (+)
RNA-Seq Expression	CmaCh18G005730
Synteny	CmaCh18G005730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACCATGTTCCTGAAGATAGCCTCTATGAGGGGGTGTTGAGGTTCGGGAAGAAGGGAAAGTTGAGCCCAAGGTTCATTGGCCCCTCCAAGATTCTAGAGAGAGTTGAGGTTGTGGCCTATGAAATTGCCCTACCACCGAACTTTGCCGCCGTACACAATGTGTTCCACGTGTCCATGCTACGAACATACACTCCAGACCCTACCCAGGTGATCGAACATGAAATGCTTTGTCTTTAGGAAGATCTGTCATACGAGGAGAAACCTAGCAGAATTTTGGCTCGAGACACCAGACGATTGAACAACAAAGTTATTCCCTTGGTGAAGGTCTCATGGGGTAACCACCGCGAGGAAGAGGCAACTTGGGAACGAGAAGAGAACGTAAAGAGAGCCTATCCTGAACTCTTCCAAGAGATGCCAACTTTCGGGGACGAAAGTTCGTAA

mRNA sequence

ATGGGTGACCATGTTCCTGAAGATAGCCTCTATGAGGGGGTGTTGAGGTTCGGGAAGAAGGGAAAGTTGAGCCCAAGGTTCATTGGCCCCTCCAAGATTCTAGAGAGAGTTGAGGTTGTGGCCTATGAAATTGCCCTACCACCGAACTTTGCCGCCGTACACAATGTGTTCCACGTGTCCATGCTACGAACATACACTCCAGACCCTACCCAGGTCTCATGGGGTAACCACCGCGAGGAAGAGGCAACTTGGGAACGAGAAGAGAACGTAAAGAGAGCCTATCCTGAACTCTTCCAAGAGATGCCAACTTTCGGGGACGAAAGTTCGTAA

Coding sequence (CDS)

ATGGGTGACCATGTTCCTGAAGATAGCCTCTATGAGGGGGTGTTGAGGTTCGGGAAGAAGGGAAAGTTGAGCCCAAGGTTCATTGGCCCCTCCAAGATTCTAGAGAGAGTTGAGGTTGTGGCCTATGAAATTGCCCTACCACCGAACTTTGCCGCCGTACACAATGTGTTCCACGTGTCCATGCTACGAACATACACTCCAGACCCTACCCAGGTCTCATGGGGTAACCACCGCGAGGAAGAGGCAACTTGGGAACGAGAAGAGAACGTAAAGAGAGCCTATCCTGAACTCTTCCAAGAGATGCCAACTTTCGGGGACGAAAGTTCGTAA

Protein sequence

MGDHVPEDSLYEGVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHVSMLRTYTPDPTQVSWGNHREEEATWEREENVKRAYPELFQEMPTFGDESS

Homology

[Close]

BLAST of CmaCh18G005730 vs. ExPASy TrEMBL
Match: A0A6J1F3U5 (uncharacterized protein LOC111439747 OS=Cucurbita moschata OX=3662 GN=LOC111439747 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.5e-33
Identity = 82/136 (60.29%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 13  GVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHVSMLRTYTPDPT-- 72
           GVLRFGKK KLSPRFIGP +ILERV  VAY IAL PN AAVHNVFHVSMLR YTPDPT  
Sbjct: 3   GVLRFGKKEKLSPRFIGPFEILERVGAVAYRIALSPNLAAVHNVFHVSMLRKYTPDPTHV 62

Query: 73  -------------------------------------QVSWGNHREEEATWEREENVKRA 110
                                                +VSWGNHREEEATWEREE+V+RA
Sbjct: 63  IEHEMLPLREDLSYEEKPIRTLARDTRRLCNKDIPLVKVSWGNHREEEATWEREEDVRRA 122

[Close]

BLAST of CmaCh18G005730 vs. ExPASy TrEMBL
Match: A0A6J1IKU9 (uncharacterized protein LOC111473740 OS=Cucurbita maxima OX=3661 GN=LOC111475011 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-26
Identity = 68/143 (47.55%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 6   PEDSLYEGVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHVSMLRTY 65
           P+ S +  VLRF KKGKLSPRF+GP +IL+R+  VAY + LPP  A VHNVFHVSMLR Y
Sbjct: 115 PKGSTHVKVLRFEKKGKLSPRFVGPFEILKRIGAVAYRLVLPPTVATVHNVFHVSMLRKY 174

Query: 66  TPDPT---------------------------------------QVSWGNHREEEATWER 110
           TPDPT                                       +V WGNH + EATWER
Sbjct: 175 TPDPTHIIEDEALPLREDLSYEEAPIKIISRDVKRLRNKEIPLVKVLWGNHLDSEATWER 234

[Close]

BLAST of CmaCh18G005730 vs. ExPASy TrEMBL
Match: A0A6J1ICP7 (uncharacterized protein LOC111474449 OS=Cucurbita maxima OX=3661 GN=LOC111474449 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-26
Identity = 68/143 (47.55%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 6   PEDSLYEGVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHVSMLRTY 65
           P+ S +  VLRF KKGKLSPRF+GP +IL+R+  VAY + LPP  A VHNVFHVSMLR Y
Sbjct: 115 PKGSTHVKVLRFEKKGKLSPRFVGPFEILKRIGAVAYRLVLPPTVATVHNVFHVSMLRKY 174

Query: 66  TPDPT---------------------------------------QVSWGNHREEEATWER 110
           TPDPT                                       +V WGNH + EATWER
Sbjct: 175 TPDPTHIIEDEALSLREDLSYEEAPIKIISRDVKRLRNKEIPLVKVLWGNHLDSEATWER 234

[Close]

BLAST of CmaCh18G005730 vs. ExPASy TrEMBL
Match: A0A6J1GK52 (Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111454654 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.7e-26
Identity = 66/136 (48.53%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 12   EGVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHVSMLRTYTPDPT- 71
            +G+LRFG+KGKLSPRFIGP +ILERV  VAY++ALPP+ ++VH++FHVSMLR Y PDPT 
Sbjct: 1123 KGILRFGRKGKLSPRFIGPFEILERVGPVAYKLALPPSLSSVHDIFHVSMLRKYIPDPTH 1182

Query: 72   --------------------------------------QVSWGNHREEEATWEREENVKR 109
                                                  +V W NH+ EEATWEREE +K+
Sbjct: 1183 VINYKPLKIKENLSYHEKPIKILAQEVKALNNRSIGFVKVLWRNHQVEEATWEREEEIKK 1242

[Close]

BLAST of CmaCh18G005730 vs. ExPASy TrEMBL
Match: A0A6J1KMS7 (uncharacterized protein LOC111496707 OS=Cucurbita maxima OX=3661 GN=LOC111496707 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.0e-25
Identity = 71/149 (47.65%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 1   MGDHV-PEDSLYEGVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHV 60
           MGDHV  + +   GVLRFGKKGKLS RF+GP ++LER+  VAY +ALPP  AAVHNVFH+
Sbjct: 1   MGDHVFLKVAPMRGVLRFGKKGKLSLRFVGPFEVLERIGPVAYRLALPPTLAAVHNVFHL 60

Query: 61  SMLRTYTPDPT---------------------------------------QVSWGNHREE 110
           SMLR Y PDPT                                       +V W NHR+ 
Sbjct: 61  SMLRKYNPDPTHIIDHETLPIRKDLSYEEKPIGIMTHDVRRLRRMEIPLVKVLWKNHRDN 120

[Close]

BLAST of CmaCh18G005730 vs. NCBI nr
Match: XP_023513222.1 (uncharacterized protein LOC111777740 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.0 bits (380), Expect = 6.0e-33
Identity = 85/148 (57.43%), Postives = 93/148 (62.84%), Query Frame = 0


Query: 1   MGDHV-PEDSLYEGVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHV 60
           +GDHV  + +    VLRFGKKGKLSPRFIGP KILERV VVAY IALPPN A VHNVFHV
Sbjct: 105 VGDHVFLKVAPMRVVLRFGKKGKLSPRFIGPFKILERVGVVAYRIALPPNLAVVHNVFHV 164

Query: 61  SMLRTYTPDPT---------------------------------------QVSWGNHREE 109
            ML+ YT DPT                                       +VSWGNHREE
Sbjct: 165 FMLQKYTLDPTHVIEHEMLPLWEDLSYEEKPSRILARDTRRLRNKDIPLVKVSWGNHREE 224

[Close]

BLAST of CmaCh18G005730 vs. NCBI nr
Match: XP_022933045.1 (uncharacterized protein LOC111439747 [Cucurbita moschata])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 82/136 (60.29%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 13  GVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHVSMLRTYTPDPT-- 72
           GVLRFGKK KLSPRFIGP +ILERV  VAY IAL PN AAVHNVFHVSMLR YTPDPT  
Sbjct: 3   GVLRFGKKEKLSPRFIGPFEILERVGAVAYRIALSPNLAAVHNVFHVSMLRKYTPDPTHV 62

Query: 73  -------------------------------------QVSWGNHREEEATWEREENVKRA 110
                                                +VSWGNHREEEATWEREE+V+RA
Sbjct: 63  IEHEMLPLREDLSYEEKPIRTLARDTRRLCNKDIPLVKVSWGNHREEEATWEREEDVRRA 122

[Close]

BLAST of CmaCh18G005730 vs. NCBI nr
Match: XP_023520917.1 (uncharacterized protein LOC111784441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-31
Identity = 79/149 (53.02%), Postives = 95/149 (63.76%), Query Frame = 0


Query: 1   MGDHV-PEDSLYEGVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHV 60
           +GDH+  + +   GVLR+ KKGKLSPRFIGP +ILERV  +AY IALPPN AAVHNVFHV
Sbjct: 124 VGDHIFLKVAPMRGVLRYRKKGKLSPRFIGPFEILERVGAMAYRIALPPNLAAVHNVFHV 183

Query: 61  SMLRTYTPDPT---------------------------------------QVSWGNHREE 110
           SMLR YTP+PT                                       +VSWGN REE
Sbjct: 184 SMLRKYTPNPTHVIEHEMLPLREDLSYEEKPSRILTRDTRRLRNKDIPLVKVSWGNRREE 243

[Close]

BLAST of CmaCh18G005730 vs. NCBI nr
Match: XP_022974918.1 (uncharacterized protein LOC111473740 [Cucurbita maxima] >XP_022975138.1 uncharacterized protein LOC111474119 [Cucurbita maxima] >XP_022975391.1 uncharacterized protein LOC111474705 [Cucurbita maxima] >XP_022975529.1 uncharacterized protein LOC111475011 [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 4.2e-26
Identity = 68/143 (47.55%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 6   PEDSLYEGVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHVSMLRTY 65
           P+ S +  VLRF KKGKLSPRF+GP +IL+R+  VAY + LPP  A VHNVFHVSMLR Y
Sbjct: 115 PKGSTHVKVLRFEKKGKLSPRFVGPFEILKRIGAVAYRLVLPPTVATVHNVFHVSMLRKY 174

Query: 66  TPDPT---------------------------------------QVSWGNHREEEATWER 110
           TPDPT                                       +V WGNH + EATWER
Sbjct: 175 TPDPTHIIEDEALPLREDLSYEEAPIKIISRDVKRLRNKEIPLVKVLWGNHLDSEATWER 234

[Close]

BLAST of CmaCh18G005730 vs. NCBI nr
Match: XP_022975302.1 (uncharacterized protein LOC111474449 [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 4.2e-26
Identity = 68/143 (47.55%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 6   PEDSLYEGVLRFGKKGKLSPRFIGPSKILERVEVVAYEIALPPNFAAVHNVFHVSMLRTY 65
           P+ S +  VLRF KKGKLSPRF+GP +IL+R+  VAY + LPP  A VHNVFHVSMLR Y
Sbjct: 115 PKGSTHVKVLRFEKKGKLSPRFVGPFEILKRIGAVAYRLVLPPTVATVHNVFHVSMLRKY 174

Query: 66  TPDPT---------------------------------------QVSWGNHREEEATWER 110
           TPDPT                                       +V WGNH + EATWER
Sbjct: 175 TPDPTHIIEDEALSLREDLSYEEAPIKIISRDVKRLRNKEIPLVKVLWGNHLDSEATWER 234

The following BLAST results are available for this feature:

BLAST of CmaCh18G005730 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh18G005730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3U5	6.5e-33	60.29	uncharacterized protein LOC111439747 OS=Cucurbita moschata OX=3662 GN=LOC1114397...	[more]
A0A6J1IKU9	2.0e-26	47.55	uncharacterized protein LOC111473740 OS=Cucurbita maxima OX=3661 GN=LOC111475011...	[more]
A0A6J1ICP7	2.0e-26	47.55	uncharacterized protein LOC111474449 OS=Cucurbita maxima OX=3661 GN=LOC111474449...	[more]
A0A6J1GK52	7.7e-26	48.53	Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111454654 PE=4 SV=1	[more]
A0A6J1KMS7	1.0e-25	47.65	uncharacterized protein LOC111496707 OS=Cucurbita maxima OX=3661 GN=LOC111496707...	[more]

BLAST of CmaCh18G005730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513222.1	6.0e-33	57.43	uncharacterized protein LOC111777740 [Cucurbita pepo subsp. pepo]	[more]
XP_022933045.1	1.3e-32	60.29	uncharacterized protein LOC111439747 [Cucurbita moschata]	[more]
XP_023520917.1	2.5e-31	53.02	uncharacterized protein LOC111784441 [Cucurbita pepo subsp. pepo]	[more]
XP_022974918.1	4.2e-26	47.55	uncharacterized protein LOC111473740 [Cucurbita maxima] >XP_022975138.1 uncharac...	[more]
XP_022975302.1	4.2e-26	47.55	uncharacterized protein LOC111474449 [Cucurbita maxima]	[more]

BLAST of CmaCh18G005730 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 6..72
None	No IPR available	PANTHER	PTHR46148:SF33	OS05G0296332 PROTEIN	coord: 6..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G005730.1	CmaCh18G005730.1	mRNA