CmaCh18G004840 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G004840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSignal recognition particle 14 kDa protein
LocationCma_Chr18: 2753390 .. 2755294 (+)
RNA-Seq ExpressionCmaCh18G004840
SyntenyCmaCh18G004840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTCATCAACTACTGGAAAAGATGTCAGATTTCCAGCAGGACTTCACTTATGAGTTTCCTCCAAGGAGGACGTACTATTGGAATTGAGTACAGTTGCCAAAAATTCACTGCACATGGGAAGGTTGTTGCTAACATCTTGCAGATTCTACTTAGAAGTTATGTGTACAGATCAGGATCATGGTGCTTCCACATCAGTTCGGTGTACAGACTTGTATAGCATTCAAATCTGAAATTACTATGGATTGATAGATTGGCTGTAGGTAACTCGGAAAATGACAAGCAACGTCAAATGGCTGGATAATTAATTAAATGGAAAGGTGATGACTGCATTTGTCTGCTGAATAATAATAGAAAGAACACAATTGCTATATCAACTTTAGTCCTCGTCTCAATGAATTTGGACAGTACTTACATTGACTTAGACCATACTTAAATTGACTTGATTTATGGGCATTTATCAGTCCAAATAATGAGATGTCATCAAGAGCAGAATACTTTGGTTTGATTTTGATGTTGTTATGTTCCCTTTCTTTTGATTTAGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGCAGTACCGAGAAGGGTTCAGTGTGGGTTACTCTAAAACGATGTATGCATATCAGGTTGTTGATTAGTTTAATGAATCTTTATGACAATCTTTAGGAATCTGATTAGTTTCAAACTATATCGTATCTCTTATTGTTGTAGCGTCACTGAAGTCCAAGGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCTATCGAGTACAGGTGCCTCATCCGTGCAACTGATGGGAAGAAGACAATTTCAACTTCAGTAAGTATTGACTAATCTTTTAGGCATTTTTTCCCCCCCTGAATTAAAATCTTTGCTTGGGGCGGTAAATTCTAAATTTACTCAGGATGAAAGCTGCTACCCATTGATTTGAAAGATGCTGTGTTTGGACATCGTTTCTTTTTACTTTATTTATGCTTCACTCTAAGTTTGTGTTATTACTTAATGCAATCCTGGAGTGGGGCGATTATCAAAAAGGTTCTTCTACTCAAGCACGGACACAGTTCACTTGTCAATACCAATTAACATTTAGTCTATGCCTTTTTTTATGCAATGGCATTTATTTTAAAGACACGATCAGTAATGAAGAAATAGTTTTAAAACTTGAATGGACATTCTGGCATTTAGGAAGGGAATAGACTTCATACTAATGCTCCCTCAATTTTTCTTTTACATTCAAGATCGATGTTTATGCCATCTTGCCTTAATACTGAGGAAGTAATATACGAATTCGAGCCCTTCACCCTTCTCACTTCTTTATGAATTAGTTCTTTTTGCTTGAATTTTATTTATTTCATTCCTTTTGGTAAACAGAAGCATAACCTGTTTTCTTTTTTTTTAAAAAAACATCATTCGGTATGTCGCCGTTTCACATTCTTCAAATCTTATTATCTTTATTATTGCTTAATTTTTATTCAACAGCGTTTTATTTTTGAGGTTTCTTTTAACTTTCTTGAATCTGAAGCATTTGTAACATTTTCTCTTTAACTGGCAAGGTTGGAGCTAAAGACCACCTGAGATTTCAAGCTTCCTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGGAAGGACAGGAAGAAGGCACCAGAGGCAGAGAAGGATTCGAAGAAGAAACCAAGGAAAGTATGAGGGGAGGTTCTCTTGCTTTTGTAGGTTTCTCAAACTAGGGTAACTTTCTTTTCTTGGTTACGCTTTTGATTTCAAAATGACTTCTATCCTTTGACCTGAGTGTTATGCTTCCCCCTTATTTCTAGGAAAATGCAGAGGAAAGAAGGGGGGGAGGTAGAATTTTTGGAATTTCA

mRNA sequence

ATGTGTTTCATCAACTACTGGAAAAGATGTCAGATTTCCAGCAGGACTTCACTTATGAGTTTCCTCCAAGGAGGACGTACTATTGGAATTGAGTACAGTTGCCAAAAATTCACTGCACATGGGAAGGTTGTTGCTAACATCTTGCAGATTCTACTTAGAAGTTATGTGTACAGATCAGGATCATGGTGCTTCCACATCAGTTCGGTGTACAGACTTGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGCAGTACCGAGAAGGGTTCAGTGTGGGTTACTCTAAAACGATCGTCACTGAAGTCCAAGGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCTATCGAGTACAGGTGCCTCATCCGTGCAACTGATGGGAAGAAGACAATTTCAACTTCAGTTGGAGCTAAAGACCACCTGAGATTTCAAGCTTCCTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGGAAGGACAGGAAGAAGGCACCAGAGGCAGAGAAGGATTCGAAGAAGAAACCAAGGAAAGTATGAGGGGAGGTTCTCTTGCTTTTGTAGGTTTCTCAAACTAGGGAAAATGCAGAGGAAAGAAGGGGGGGAGGTAGAATTTTTGGAATTTCA

Coding sequence (CDS)

ATGTGTTTCATCAACTACTGGAAAAGATGTCAGATTTCCAGCAGGACTTCACTTATGAGTTTCCTCCAAGGAGGACGTACTATTGGAATTGAGTACAGTTGCCAAAAATTCACTGCACATGGGAAGGTTGTTGCTAACATCTTGCAGATTCTACTTAGAAGTTATGTGTACAGATCAGGATCATGGTGCTTCCACATCAGTTCGGTGTACAGACTTGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGCAGTACCGAGAAGGGTTCAGTGTGGGTTACTCTAAAACGATCGTCACTGAAGTCCAAGGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCTATCGAGTACAGGTGCCTCATCCGTGCAACTGATGGGAAGAAGACAATTTCAACTTCAGTTGGAGCTAAAGACCACCTGAGATTTCAAGCTTCCTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGGAAGGACAGGAAGAAGGCACCAGAGGCAGAGAAGGATTCGAAGAAGAAACCAAGGAAAGTATGA

Protein sequence

MCFINYWKRCQISSRTSLMSFLQGGRTIGIEYSCQKFTAHGKVVANILQILLRSYVYRSGSWCFHISSVYRLVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV
Homology
[Close]
BLAST of CmaCh18G004840 vs. ExPASy Swiss-Prot
Match: O04421 (Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP14 PE=2 SV=2)

HSP 1 Score: 176.8 bits (447), Expect = 2.3e-43
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +VLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRK 189
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKDRKK+ EAEK       K
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEKKESTSTTK 117

[Close]
BLAST of CmaCh18G004840 vs. ExPASy Swiss-Prot
Match: O04433 (Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica OX=39947 GN=SRP14 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.6e-36
Identity = 78/117 (66.67%), Postives = 99/117 (84.62%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +V+LQ DPFL+ELTSM+ERSTEKGSVWVT+KRSS+K + +  KM   G+ +EYRCL+RAT
Sbjct: 1   MVVLQPDPFLSELTSMYERSTEKGSVWVTMKRSSMKCQARLKKMAAKGEAVEYRCLVRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRK 189
           DGKK I T++ AK++L+FQASY+T+LKAHM ALKKRERKD+KKA E EK  +K P+K
Sbjct: 61  DGKKNICTALSAKEYLKFQASYATVLKAHMHALKKRERKDKKKAAEVEKIPEKAPKK 117

[Close]
BLAST of CmaCh18G004840 vs. ExPASy Swiss-Prot
Match: P37108 (Signal recognition particle 14 kDa protein OS=Homo sapiens OX=9606 GN=SRP14 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 131
           +VLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 132 TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEA 179
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K++ K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]
BLAST of CmaCh18G004840 vs. ExPASy Swiss-Prot
Match: Q4R5C7 (Signal recognition particle 14 kDa protein OS=Macaca fascicularis OX=9541 GN=SRP14 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 131
           +VLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 132 TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEA 179
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K++ K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]
BLAST of CmaCh18G004840 vs. ExPASy Swiss-Prot
Match: Q5RBX7 (Signal recognition particle 14 kDa protein OS=Pongo abelii OX=9601 GN=SRP14 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 131
           +VLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 132 TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEA 179
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K++ K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]
BLAST of CmaCh18G004840 vs. ExPASy TrEMBL
Match: A0A6J1K2P1 (signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490504 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.8e-54
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 190
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 118

[Close]
BLAST of CmaCh18G004840 vs. ExPASy TrEMBL
Match: A0A6J1GR82 (signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456777 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.8e-54
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 190
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 118

[Close]
BLAST of CmaCh18G004840 vs. ExPASy TrEMBL
Match: A0A5A7UG42 (Signal recognition particle 14 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00850 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 4.1e-51
Identity = 114/122 (93.44%), Postives = 117/122 (95.90%), Query Frame = 0 

Query: 68  SVYRLVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCL 127
           S ++ VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCL
Sbjct: 2   SDFQWVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCL 61

Query: 128 IRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPR 187
           IRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKD+KKA EAEK  KKKPR
Sbjct: 62  IRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPR 121

Query: 188 KV 190
           KV
Sbjct: 122 KV 123

[Close]
BLAST of CmaCh18G004840 vs. ExPASy TrEMBL
Match: A0A6J1KGP7 (signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495612 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 5.4e-51
Identity = 113/118 (95.76%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 190
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKD+KKA EAEK  KKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]
BLAST of CmaCh18G004840 vs. ExPASy TrEMBL
Match: A0A0A0LYE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534730 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 5.4e-51
Identity = 113/118 (95.76%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 190
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKD+KKA EAEK  KKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]
BLAST of CmaCh18G004840 vs. NCBI nr
Match: XP_022954536.1 (signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita moschata] >XP_022954537.1 signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita moschata] >XP_022994924.1 signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita maxima] >XP_022994925.1 signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita maxima] >XP_023541199.1 signal recognition particle 14 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023541200.1 signal recognition particle 14 kDa protein-like [Cucurbita pepo subsp. pepo] >KAG6573374.1 Signal recognition particle 14 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012543.1 Signal recognition particle 14 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-53
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 190
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 118

[Close]
BLAST of CmaCh18G004840 vs. NCBI nr
Match: XP_038893990.1 (signal recognition particle 14 kDa protein isoform X2 [Benincasa hispida])

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-51
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 190
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKD+KKAPEAEK  KKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAPEAEKGLKKKPRKV 118

[Close]
BLAST of CmaCh18G004840 vs. NCBI nr
Match: XP_038893989.1 (signal recognition particle 14 kDa protein isoform X1 [Benincasa hispida])

HSP 1 Score: 213.0 bits (541), Expect = 2.2e-51
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 73  VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 132
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 9   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 68

Query: 133 GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 190
           GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKD+KKAPEAEK  KKKPRKV
Sbjct: 69  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAPEAEKGLKKKPRKV 125

[Close]
BLAST of CmaCh18G004840 vs. NCBI nr
Match: KAG7019502.1 (Signal recognition particle 14 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.2 bits (539), Expect = 3.8e-51
Identity = 115/125 (92.00%), Postives = 118/125 (94.40%), Query Frame = 0 

Query: 65  HISSVYRLVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEY 124
           + SS   +VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEY
Sbjct: 12  YASSYRPMVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEY 71

Query: 125 RCLIRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKK 184
           RCLIRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKD+KKA EAEK  KK
Sbjct: 72  RCLIRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKK 131

Query: 185 KPRKV 190
           KPRKV
Sbjct: 132 KPRKV 136

[Close]
BLAST of CmaCh18G004840 vs. NCBI nr
Match: KGN66307.2 (hypothetical protein Csa_023187 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 8.5e-51
Identity = 114/123 (92.68%), Postives = 117/123 (95.12%), Query Frame = 0 

Query: 67  SSVYRLVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRC 126
           S+   +VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRC
Sbjct: 79  STSIAMVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRC 138

Query: 127 LIRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKP 186
           LIRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKD+KKA EAEK  KKKP
Sbjct: 139 LIRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKP 198

Query: 187 RKV 190
           RKV
Sbjct: 199 RKV 201

[Close]
BLAST of CmaCh18G004840 vs. TAIR 10
Match: AT2G43640.1 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-44
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +VLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRK 189
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKDRKK+ EAEK       K
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEKKESTSTTK 117

[Close]
BLAST of CmaCh18G004840 vs. TAIR 10
Match: AT2G43640.2 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-44
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +VLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRK 189
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKDRKK+ EAEK       K
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEKKESTSTTK 117

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BLAST of CmaCh18G004840 vs. TAIR 10
Match: AT2G43640.3 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-36
Identity = 84/117 (71.79%), Postives = 95/117 (81.20%), Query Frame = 0 

Query: 72  LVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 131
           +VLLQLDPFLNELTSMFE+S EK         +SLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEK---------ASLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 132 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRK 189
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKDRKK+ EAEK       K
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEKKESTSTTK 108

The following BLAST results are available for this feature:
BLAST of CmaCh18G004840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O044212.3e-4380.34Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
O044333.6e-3666.67Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica OX=39... [more]
P371081.1e-1644.44Signal recognition particle 14 kDa protein OS=Homo sapiens OX=9606 GN=SRP14 PE=1... [more]
Q4R5C71.1e-1644.44Signal recognition particle 14 kDa protein OS=Macaca fascicularis OX=9541 GN=SRP... [more]
Q5RBX71.1e-1644.44Signal recognition particle 14 kDa protein OS=Pongo abelii OX=9601 GN=SRP14 PE=2... [more]
BLAST of CmaCh18G004840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K2P18.8e-5499.15signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima O... [more]
A0A6J1GR828.8e-5499.15signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita moschata... [more]
A0A5A7UG424.1e-5193.44Signal recognition particle 14 kDa protein OS=Cucumis melo var. makuwa OX=119469... [more]
A0A6J1KGP75.4e-5195.76signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima O... [more]
A0A0A0LYE05.4e-5195.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534730 PE=3 SV=1[more]
BLAST of CmaCh18G004840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022954536.11.8e-5399.15signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita moschata] ... [more]
XP_038893990.11.3e-5196.61signal recognition particle 14 kDa protein isoform X2 [Benincasa hispida][more]
XP_038893989.12.2e-5197.44signal recognition particle 14 kDa protein isoform X1 [Benincasa hispida][more]
KAG7019502.13.8e-5192.00Signal recognition particle 14 kDa protein, partial [Cucurbita argyrosperma subs... [more]
KGN66307.28.5e-5192.68hypothetical protein Csa_023187 [Cucumis sativus][more]
BLAST of CmaCh18G004840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43640.11.7e-4480.34Signal recognition particle, SRP9/SRP14 subunit [more]
AT2G43640.21.7e-4480.34Signal recognition particle, SRP9/SRP14 subunit [more]
AT2G43640.32.2e-3671.79Signal recognition particle, SRP9/SRP14 subunit [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009018Signal recognition particle, SRP9/SRP14 subunitGENE3D3.30.720.10Signal recognition particle alu RNA binding heterodimer, srp9/1coord: 72..189
e-value: 1.6E-38
score: 134.3
IPR009018Signal recognition particle, SRP9/SRP14 subunitSUPERFAMILY54762Signal recognition particle alu RNA binding heterodimer, SRP9/14coord: 73..167
IPR003210Signal recognition particle, SRP14 subunitPFAMPF02290SRP14coord: 75..164
e-value: 4.4E-22
score: 78.5
IPR003210Signal recognition particle, SRP14 subunitPANTHERPTHR12013SIGNAL RECOGNITION PARTICLE 14 KD PROTEINcoord: 50..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..189
NoneNo IPR availablePANTHERPTHR12013:SF3SUBFAMILY NOT NAMEDcoord: 50..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G004840.1CmaCh18G004840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G protein-coupled receptor signaling pathway
biological_process GO:0006457 protein folding
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
cellular_component GO:0048500 signal recognition particle
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0030942 endoplasmic reticulum signal peptide binding