CmaCh18G004310 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G004310
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr18: 2381247 .. 2381501 (-)
RNA-Seq ExpressionCmaCh18G004310
SyntenyCmaCh18G004310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACACCGGGGCTGGGGACGGAGCGGAGAATACGATCGCTGTCGTAATAATAATAATAATAATGTCGGGGATGGGCGATGGCGATGAGGCGGCGGCCACGGAGGAGCTTCTGGTCGGAGAGGATGGCATGGGCTTTCTGGCTGGGAGAAGACGGCGGCGTGTGGCCTTTGGTGAGGGCGGCGAAGAAGAGGTTGTCGTTGTTGTTGTTGTGAAGAAGAAGAAGGAGGAGGAGGAAGAAGATGAGAAATAG

mRNA sequence

ATGGCCGACACCGGGGCTGGGGACGGAGCGGAGAATACGATCGCTGTCGTAATAATAATAATAATAATGTCGGGGATGGGCGATGGCGATGAGGCGGCGGCCACGGAGGAGCTTCTGGTCGGAGAGGATGGCATGGGCTTTCTGGCTGGGAGAAGACGGCGGCGTGTGGCCTTTGGTGAGGGCGGCGAAGAAGAGGTTGTCGTTGTTGTTGTTGTGAAGAAGAAGAAGGAGGAGGAGGAAGAAGATGAGAAATAG

Coding sequence (CDS)

ATGGCCGACACCGGGGCTGGGGACGGAGCGGAGAATACGATCGCTGTCGTAATAATAATAATAATAATGTCGGGGATGGGCGATGGCGATGAGGCGGCGGCCACGGAGGAGCTTCTGGTCGGAGAGGATGGCATGGGCTTTCTGGCTGGGAGAAGACGGCGGCGTGTGGCCTTTGGTGAGGGCGGCGAAGAAGAGGTTGTCGTTGTTGTTGTTGTGAAGAAGAAGAAGGAGGAGGAGGAAGAAGATGAGAAATAG

Protein sequence

MADTGAGDGAENTIAVVIIIIIMSGMGDGDEAAATEELLVGEDGMGFLAGRRRRRVAFGEGGEEEVVVVVVVKKKKEEEEEDEK
Homology
BLAST of CmaCh18G004310 vs. ExPASy TrEMBL
Match: A0A0A0LUK7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467730 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 1  MADTGAGDGAENTIAVVIIIIIMSGMG----DGDEAA--ATEELLVGEDGMGFLAGRRRR 60
          MADTGA DG E  I   ++II M G+G     GDEAA  A EEL VGE G+ F+AGRR R
Sbjct: 1  MADTGAWDGTEKPI---VVIIRMWGLGRMVSSGDEAAMGAAEELKVGESGVAFVAGRRWR 60

Query: 61 RVAFGEGGEEEVVVVV 71
          R  FGEGGEEE V ++
Sbjct: 61 RWGFGEGGEEEGVGIM 73

BLAST of CmaCh18G004310 vs. NCBI nr
Match: KAG6573327.1 (hypothetical protein SDJN03_27214, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23
Identity = 70/84 (83.33%), Postives = 76/84 (90.48%), Query Frame = 0

Query: 1  MADTGAGDGAENTIAVVIIIIIMSGMGDGDEAAATEELLVGEDGMGFLAGRRRRRVAFGE 60
          MADTGAGDGAENTIAVV I IIMSG+  GDEAAATEE LVG DG+GFLAGRRRRRVAFGE
Sbjct: 1  MADTGAGDGAENTIAVV-IKIIMSGICGGDEAAATEERLVGVDGVGFLAGRRRRRVAFGE 60

Query: 61 GGEEEVVVVVVVKKKKEEEEEDEK 85
          GGEEEVVVVVV KKK +++EEDE+
Sbjct: 61 GGEEEVVVVVVKKKKNKKKEEDEQ 83

BLAST of CmaCh18G004310 vs. NCBI nr
Match: KAG6583942.1 (Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 48/69 (69.57%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1  MADTGAGDGAENTIAVVIIIIIMSGMGDGDEAAATEELLVGEDGMGFLAGRRRRRVAFGE 60
          MADTGAGDGAE++IAV    IIM GMG GDEAA TE +L GE G+GF+AG RRRR AF E
Sbjct: 8  MADTGAGDGAEDSIAV----IIMWGMG-GDEAATTEVVLRGETGVGFIAGSRRRRAAFWE 67

Query: 61 GGEEEVVVV 70
           GEEE V V
Sbjct: 68 SGEEEPVDV 71

BLAST of CmaCh18G004310 vs. NCBI nr
Match: KGN65605.1 (hypothetical protein Csa_019632 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 6.7e-08
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 1  MADTGAGDGAENTIAVVIIIIIMSGMG----DGDEAA--ATEELLVGEDGMGFLAGRRRR 60
          MADTGA DG E  I   ++II M G+G     GDEAA  A EEL VGE G+ F+AGRR R
Sbjct: 1  MADTGAWDGTEKPI---VVIIRMWGLGRMVSSGDEAAMGAAEELKVGESGVAFVAGRRWR 60

Query: 61 RVAFGEGGEEEVVVVV 71
          R  FGEGGEEE V ++
Sbjct: 61 RWGFGEGGEEEGVGIM 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LUK73.3e-0857.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467730 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6573327.11.9e-2383.33hypothetical protein SDJN03_27214, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583942.12.2e-1169.57Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. sororia][more]
KGN65605.16.7e-0857.89hypothetical protein Csa_019632 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G004310.1CmaCh18G004310.1mRNA