CmaCh18G002520 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G002520
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionDetected protein of confused Function
LocationCma_Chr18: 1339682 .. 1340041 (+)
RNA-Seq ExpressionCmaCh18G002520
SyntenyCmaCh18G002520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATTTTGATGAAACGCATGCAAAATGGGTACTCAAGAATGGAGAAGGAAGACCCAGAAGAGAAAAGGCACAGACAAGCTCTGTTCTTGATTTACAAGATAATGGAGCAGGCAACCAATGGAAATGGCAATGCCAATGGCCACAGGAGGAGGTCTTCTTGTCTCAGAATCAAAACACGAAAGCTTAGGCTAAGGATTGGAAGGAGGTTGAAGAAGCTGAAGAAGGCCATGTCAATGTGTCTGTCCACAGCAAGAATTGGGCTCTGCAACCAATTTCAACAGCTTAGAACTTGTAAGAGCGCGCTGCGACGACGACCCAAGGTGGAAGCTTTGGCCTTTCCTTCTTTGGTCACTTAA

mRNA sequence

ATGAGTATTTTGATGAAACGCATGCAAAATGGGTACTCAAGAATGGAGAAGGAAGACCCAGAAGAGAAAAGGCACAGACAAGCTCTGTTCTTGATTTACAAGATAATGGAGCAGGCAACCAATGGAAATGGCAATGCCAATGGCCACAGGAGGAGGTCTTCTTGTCTCAGAATCAAAACACGAAAGCTTAGGCTAAGGATTGGAAGGAGGTTGAAGAAGCTGAAGAAGGCCATGTCAATGTGTCTGTCCACAGCAAGAATTGGGCTCTGCAACCAATTTCAACAGCTTAGAACTTGTAAGAGCGCGCTGCGACGACGACCCAAGGTGGAAGCTTTGGCCTTTCCTTCTTTGGTCACTTAA

Coding sequence (CDS)

ATGAGTATTTTGATGAAACGCATGCAAAATGGGTACTCAAGAATGGAGAAGGAAGACCCAGAAGAGAAAAGGCACAGACAAGCTCTGTTCTTGATTTACAAGATAATGGAGCAGGCAACCAATGGAAATGGCAATGCCAATGGCCACAGGAGGAGGTCTTCTTGTCTCAGAATCAAAACACGAAAGCTTAGGCTAAGGATTGGAAGGAGGTTGAAGAAGCTGAAGAAGGCCATGTCAATGTGTCTGTCCACAGCAAGAATTGGGCTCTGCAACCAATTTCAACAGCTTAGAACTTGTAAGAGCGCGCTGCGACGACGACCCAAGGTGGAAGCTTTGGCCTTTCCTTCTTTGGTCACTTAA

Protein sequence

MSILMKRMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSSCLRIKTRKLRLRIGRRLKKLKKAMSMCLSTARIGLCNQFQQLRTCKSALRRRPKVEALAFPSLVT
Homology
BLAST of CmaCh18G002520 vs. ExPASy TrEMBL
Match: A0A6J1KG77 (uncharacterized protein LOC111495486 OS=Cucurbita maxima OX=3661 GN=LOC111495486 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.4e-33
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 0

Query: 1   MSILMKRMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSSCLRIKT 60
           MS L+ R QNGYSRMEKEDPEEK+HRQA FLIYKIMEQA +G       RRRSSCLRI+ 
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGT------RRRSSCLRIRI 60

Query: 61  RKLRLRIGRRLKKLKKAMSMCLSTARIGLCNQFQQLRTCKSALRRRPKVEALAFPSLVT 120
           RK +LRIGRRLKKLKK MSM   TAR G+C QF QLRTCKS L  RPK EALAFPSLV+
Sbjct: 61  RKFKLRIGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKS-LFGRPKEEALAFPSLVS 112

BLAST of CmaCh18G002520 vs. ExPASy TrEMBL
Match: A0A6J1CEK3 (uncharacterized protein LOC111010796 OS=Momordica charantia OX=3673 GN=LOC111010796 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 80/119 (67.23%), Postives = 95/119 (79.83%), Query Frame = 0

Query: 1   MSILMKRMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSSCLRIKT 60
           MS+++ R Q+GYSRMEKEDPEEK+HR+A FLIYKIMEQA +G+      RRR +CLRI+ 
Sbjct: 1   MSVILTRKQSGYSRMEKEDPEEKKHREAQFLIYKIMEQANSGS------RRRPTCLRIRI 60

Query: 61  RKLRLRIGRRLKKLKKAMSMCLSTARIGLCNQFQQLRTCKSALRRRPKVEALAFPSLVT 120
           RK +LRIGRRLKKL+K+MS  LSTARIG+C Q  QLRTCKS   R  KVE LAFPSLV+
Sbjct: 61  RKFKLRIGRRLKKLRKSMSASLSTARIGICKQIGQLRTCKSLFGRGRKVETLAFPSLVS 113

BLAST of CmaCh18G002520 vs. ExPASy TrEMBL
Match: A0A0A0LUT4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063510 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.8e-28
Identity = 75/117 (64.10%), Postives = 91/117 (77.78%), Query Frame = 0

Query: 1   MSILMK-RMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSSCLRIK 60
           MS+LM  R   GYS+MEKEDP+EK+HRQA FLIYKIMEQA+NG+      +RR SCLRI+
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGS------KRRPSCLRIR 60

Query: 61  TRKLRLRIGRRLKKLKKAMSMCLSTARIGLCNQFQQLRTCKSALRRRPKVEALAFPS 117
            RK +LR+GRR KK+KK M+M  STARIG+CNQF QLR+CKS L  + KVE L FP+
Sbjct: 61  IRKFKLRMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKS-LFGKTKVETLNFPT 110

BLAST of CmaCh18G002520 vs. ExPASy TrEMBL
Match: A0A7J6HWJ0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_027202 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1   MSILMKRMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSSCLRIKT 60
           M+I++K+  NGYS+MEKEDPEEK HR+A FLIYK+MEQA +        R+R+S LR++ 
Sbjct: 1   MAIVLKKSSNGYSKMEKEDPEEKNHRRAQFLIYKVMEQAES--------RKRTSYLRLRI 60

Query: 61  RKLRLRIGRRLKKLKKAMSMCLSTARIGLCNQFQ-QLRTCK 101
           +KL+++IG+RL KL+K+    L+TARI +  Q   QL+TCK
Sbjct: 61  KKLKVKIGKRLTKLRKS----LNTARINVYRQVSTQLKTCK 89

BLAST of CmaCh18G002520 vs. ExPASy TrEMBL
Match: A0A803NZN2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1   MSILMKRMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSSCLRIKT 60
           M+I++K+  NGYS+MEKEDPEEK HR+A FLIYK+MEQA +        R+R+S LR++ 
Sbjct: 1   MAIVLKKSSNGYSKMEKEDPEEKNHRRAQFLIYKVMEQAES--------RKRTSYLRLRI 60

Query: 61  RKLRLRIGRRLKKLKKAMSMCLSTARIGLCNQFQ-QLRTCK 101
           +KL+++IG+RL KL+K+    L+TARI +  Q   QL+TCK
Sbjct: 61  KKLKVKIGKRLTKLRKS----LNTARINVYRQVSTQLKTCK 89

BLAST of CmaCh18G002520 vs. NCBI nr
Match: KAG6573192.1 (hypothetical protein SDJN03_27079, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202.2 bits (513), Expect = 2.5e-48
Identity = 103/119 (86.55%), Postives = 110/119 (92.44%), Query Frame = 0

Query: 1   MSILMKRMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSSCLRIKT 60
           M I+MKR QNGYSR+EKEDPEEKRHRQALFLIYKIMEQA+NGNGN NG+RRR SCLRI+ 
Sbjct: 33  MGIMMKRKQNGYSRLEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNRRRPSCLRIRA 92

Query: 61  RKLRLRIGRRLKKLKKAMSMCLSTARIGLCNQFQQLRTCKSALRRRPKVEALAFPSLVT 120
           RKL+LRIGRRLKKLKK MSMCLSTARIGLCNQFQQL TC SALRR+PKVE LAFPSLVT
Sbjct: 93  RKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLTTCTSALRRQPKVEPLAFPSLVT 151

BLAST of CmaCh18G002520 vs. NCBI nr
Match: KAG7012370.1 (hypothetical protein SDJN02_25122, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.2 bits (474), Expect = 8.3e-44
Identity = 100/121 (82.64%), Postives = 107/121 (88.43%), Query Frame = 0

Query: 1   MSILMKRMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQAT----NGNGNANGHRRRSSCL 60
           M I+MKR QNGYSRMEKEDPEEKRHRQALFLIYKIMEQA+    NGNGN NG+RRR SCL
Sbjct: 1   MGIMMKRKQNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCL 60

Query: 61  RIKTRKLRLRIGRRLKKLKKAMSMCLSTARIGLCNQFQQLRTCKSALRRRPKVEALAFPS 118
           RI+ RKL+LRIGRRLKKLKK MSMCLSTARIGLCNQFQQL TCKSALRR+PKVE+  FP 
Sbjct: 61  RIRARKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLTTCKSALRRQPKVESY-FPH 120

BLAST of CmaCh18G002520 vs. NCBI nr
Match: XP_023542186.1 (uncharacterized protein LOC111802152 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-42
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 0

Query: 15  MEKEDPEEKRHRQALFLIYKIMEQAT----NGNGNANGHRRRSSCLRIKTRKLRLRIGRR 74
           MEKEDPEEKRHRQALFLIYKIMEQA+    NGNGN NG+RRR SCLRI+TRKL+LRIGRR
Sbjct: 1   MEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRIRTRKLKLRIGRR 60

Query: 75  LKKLKKAMSMCLSTARIGLCNQFQQLRTCKSALRRRPKVEALAFPSLVT 120
           LKKLKK MSMCLSTARIGLCNQFQQLRTCKSALRR+PKVEAL FPSLVT
Sbjct: 61  LKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALPFPSLVT 109

BLAST of CmaCh18G002520 vs. NCBI nr
Match: KAG6584084.1 (hypothetical protein SDJN03_20016, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 6.6e-33
Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 0

Query: 1   MSILMKRMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSSCLRIKT 60
           MS L+ R QNGYSRMEKEDPEEK+HRQA FLIYKIMEQA +G+      RRRSSCLRI+ 
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGS------RRRSSCLRIRI 60

Query: 61  RKLRLRIGRRLKKLKKAMSMCLSTARIGLCNQFQQLRTCKSALRRRPKVEALAFPSLVT 120
           RK +LRIGRRLKKLKK MSM + TARIG+C QF QLRTCKS L  R K EALAFPSLV+
Sbjct: 61  RKFKLRIGRRLKKLKKTMSMGICTARIGICKQFGQLRTCKS-LFGRAKEEALAFPSLVS 112

BLAST of CmaCh18G002520 vs. NCBI nr
Match: XP_023001322.1 (uncharacterized protein LOC111495486 [Cucurbita maxima])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 0

Query: 1   MSILMKRMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSSCLRIKT 60
           MS L+ R QNGYSRMEKEDPEEK+HRQA FLIYKIMEQA +G       RRRSSCLRI+ 
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGT------RRRSSCLRIRI 60

Query: 61  RKLRLRIGRRLKKLKKAMSMCLSTARIGLCNQFQQLRTCKSALRRRPKVEALAFPSLVT 120
           RK +LRIGRRLKKLKK MSM   TAR G+C QF QLRTCKS L  RPK EALAFPSLV+
Sbjct: 61  RKFKLRIGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKS-LFGRPKEEALAFPSLVS 112

BLAST of CmaCh18G002520 vs. TAIR 10
Match: AT4G04745.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-08
Identity = 33/78 (42.31%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 1   MSILMKRMQNGYSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSS--CLRI 60
           M++++K     Y++MEKEDP+E  HR+A FLI K++E+A +     +  RRRSS   + I
Sbjct: 26  MALMVKNSPYEYTKMEKEDPQELIHRRAQFLIQKVLERA-DSKTRQHQQRRRSSGPLIMI 85

Query: 61  KTRKLRLRIGRRLKKLKK 77
           +   +R+RIG++L+KL+K
Sbjct: 86  RVVGIRMRIGKKLRKLRK 102

BLAST of CmaCh18G002520 vs. TAIR 10
Match: AT1G11655.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 9.5e-06
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 12 YSRMEKEDPEEKRHRQALFLIYKIMEQATNGNGNANGHRRRSSCLRIKTRKLRLRIGRRL 71
          YS+M+KEDPEE   R+A FLIYK +++A       +     SS +R+K   L+++IG+RL
Sbjct: 10 YSKMDKEDPEEVLSRRAKFLIYKTLQEA----DLISRRDPHSSFIRLKLYLLKVKIGKRL 69

Query: 72 KKLKKAMSMCLSTARIG 89
           KL++++   +S  R G
Sbjct: 70 AKLRRSV---VSAVRFG 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KG775.4e-3373.11uncharacterized protein LOC111495486 OS=Cucurbita maxima OX=3661 GN=LOC111495486... [more]
A0A6J1CEK31.6e-3267.23uncharacterized protein LOC111010796 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A0A0LUT46.8e-2864.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063510 PE=4 SV=1[more]
A0A7J6HWJ01.7e-1552.48Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_027202 PE=4 SV=1[more]
A0A803NZN21.7e-1552.48Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6573192.12.5e-4886.55hypothetical protein SDJN03_27079, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012370.18.3e-4482.64hypothetical protein SDJN02_25122, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023542186.12.0e-4288.07uncharacterized protein LOC111802152 [Cucurbita pepo subsp. pepo][more]
KAG6584084.16.6e-3373.11hypothetical protein SDJN03_20016, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023001322.11.1e-3273.11uncharacterized protein LOC111495486 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT4G04745.14.6e-0842.31unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G11655.19.5e-0640.26unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR35687OS07G0516700 PROTEINcoord: 4..108
NoneNo IPR availablePANTHERPTHR35687:SF1OS07G0516700 PROTEINcoord: 4..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G002520.1CmaCh18G002520.1mRNA