CmaCh18G002370 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G002370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Cma_Chr18: 1257028 .. 1257705 (-)
RNA-Seq Expression	CmaCh18G002370
Synteny	CmaCh18G002370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGCCCCAGCCAATTGCCAGTGCACCACACCAACACGCCCGAACGGCGCCCAATCAAGCGCCACCACACAGCGCGCTACTACGTTCACCGTGTCAAGGAGAGCCTCACCACCCGCTTGTCCAAGCTCATATGCGCCATCTTCTTAAGCTTGTTGCTGATTGTGGGCATCATTACGTTTATTCTCTGGCTCAGTTTACGACCCCACCGGCCCAGGTTTTTTATCCACGACTTTTCGGTTCCCGGTTTGGGTTTGGAGACCGGGTTCGAGAATGCCCAGATTGCGTTCAACGTCACGGCTCGAAATTCGAATTTGAATATTGGGATCTACTACGGTTCGATTACCGGTTCGGTTTATTATAGAGACCAGAAAATTGGGTCGACGCCGTTGCTGGATTCGTATTATGAGGGGCCGAAGACTACTAAGGTGTTGGCGGCGGTGCTGAGTGGCGCGACGTTGAATATTAATAATGAACGGTGGATGGAATTTAATAATGACCGGTCGAAAGGGACCGTGGCTTTCCGGTTGGAGATTACGTCCACTATCCGGTTTAGGATATCCACGTGGGATAGTAAGCGCCACGGTATGCATGCTAATTGTGACGTGTCGGTGGGCCCTGATGGGATGATTTTGCCTTCTGCCAGGGATGTGAGATGCCCGGTTTACTTTACCTGA

mRNA sequence

ATGCAGAGCCCCAGCCAATTGCCAGTGCACCACACCAACACGCCCGAACGGCGCCCAATCAAGCGCCACCACACAGCGCGCTACTACGTTCACCGTGTCAAGGAGAGCCTCACCACCCGCTTGTCCAAGCTCATATGCGCCATCTTCTTAAGCTTGTTGCTGATTGTGGGCATCATTACGTTTATTCTCTGGCTCAGTTTACGACCCCACCGGCCCAGGTTTTTTATCCACGACTTTTCGGTTCCCGGTTTGGGTTTGGAGACCGGGTTCGAGAATGCCCAGATTGCGTTCAACGTCACGGCTCGAAATTCGAATTTGAATATTGGGATCTACTACGGTTCGATTACCGGTTCGGTTTATTATAGAGACCAGAAAATTGGGTCGACGCCGTTGCTGGATTCGTATTATGAGGGGCCGAAGACTACTAAGGTGTTGGCGGCGGTGCTGAGTGGCGCGACGTTGAATATTAATAATGAACGGTGGATGGAATTTAATAATGACCGGTCGAAAGGGACCGTGGCTTTCCGGTTGGAGATTACGTCCACTATCCGGTTTAGGATATCCACGTGGGATAGTAAGCGCCACGGTATGCATGCTAATTGTGACGTGTCGGTGGGCCCTGATGGGATGATTTTGCCTTCTGCCAGGGATGTGAGATGCCCGGTTTACTTTACCTGA

Coding sequence (CDS)

ATGCAGAGCCCCAGCCAATTGCCAGTGCACCACACCAACACGCCCGAACGGCGCCCAATCAAGCGCCACCACACAGCGCGCTACTACGTTCACCGTGTCAAGGAGAGCCTCACCACCCGCTTGTCCAAGCTCATATGCGCCATCTTCTTAAGCTTGTTGCTGATTGTGGGCATCATTACGTTTATTCTCTGGCTCAGTTTACGACCCCACCGGCCCAGGTTTTTTATCCACGACTTTTCGGTTCCCGGTTTGGGTTTGGAGACCGGGTTCGAGAATGCCCAGATTGCGTTCAACGTCACGGCTCGAAATTCGAATTTGAATATTGGGATCTACTACGGTTCGATTACCGGTTCGGTTTATTATAGAGACCAGAAAATTGGGTCGACGCCGTTGCTGGATTCGTATTATGAGGGGCCGAAGACTACTAAGGTGTTGGCGGCGGTGCTGAGTGGCGCGACGTTGAATATTAATAATGAACGGTGGATGGAATTTAATAATGACCGGTCGAAAGGGACCGTGGCTTTCCGGTTGGAGATTACGTCCACTATCCGGTTTAGGATATCCACGTGGGATAGTAAGCGCCACGGTATGCATGCTAATTGTGACGTGTCGGTGGGCCCTGATGGGATGATTTTGCCTTCTGCCAGGGATGTGAGATGCCCGGTTTACTTTACCTGA

Protein sequence

MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT

Homology

[Close]

BLAST of CmaCh18G002370 vs. ExPASy Swiss-Prot
Match: Q9ZVD2 (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-15
Identity = 56/173 (32.37%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 45  ICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVT--AR 104
           + A+F+ L+++ GI   +L+L  RP  P++ I  FSV G+ L +       +FNVT  +R
Sbjct: 79  LAAVFI-LIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNS-TSPISPSFNVTVRSR 138

Query: 105 NSNLNIGIYYGSITG-SVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERW 164
           N N  IG+YY   +   VYY D  I S  ++  +Y+  K   V+  VLSG+ + + +   
Sbjct: 139 NGNGKIGVYYEKESSVDVYYNDVDI-SNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMR 198

Query: 165 MEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPS 215
            E  N+ SK TV F+L+I + ++ +  +  +    ++ +CDV+V  D +  PS
Sbjct: 199 KEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTV--DKLTAPS 246

[Close]

BLAST of CmaCh18G002370 vs. ExPASy Swiss-Prot
Match: Q9FI03 (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14
Identity = 45/156 (28.85%), Postives = 76/156 (48.72%), Query Frame = 0


Query: 49  FLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLETG---FENAQIAFNVTARNSN 108
           F  LLLI+    F++WL L P RP F + +  +  L L T      N+ +   + ++N N
Sbjct: 35  FSGLLLII----FLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPN 94

Query: 109 LNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFN 168
             +GIYY  +     YR Q+I S   L  +Y+  +   +L A L G  L +      + +
Sbjct: 95  KKVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQIS 154

Query: 169 NDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANC 202
            +RS G +   +++   +R++I TW S  +  + NC
Sbjct: 155 RERSTGKIIIGMKMDGKLRWKIGTWVSGAYRFNVNC 186

[Close]

BLAST of CmaCh18G002370 vs. ExPASy Swiss-Prot
Match: Q9SRN1 (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.1e-13
Identity = 44/155 (28.39%), Postives = 78/155 (50.32%), Query Frame = 0


Query: 44  LICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLETGFE-NAQIAFNVTAR 103
           LIC I +++ +I+G+   ILWL  RP+  +F++ D ++     +     +  +  N T R
Sbjct: 54  LICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIR 113

Query: 104 NSNLNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNI-NNERW 163
           N N  +G+YY   + S YY DQ+ GS   + S+Y+G K T V+   + G  L +  +   
Sbjct: 114 NPNQRVGVYYDEFSVSGYYGDQRFGSAN-VSSFYQGHKNTTVILTKIEGQNLVVLGDGAR 173

Query: 164 MEFNNDRSKGTVAFRLEITSTIRFR---ISTWDSK 194
            +  +D   G      ++  ++RF+   I +W  K
Sbjct: 174 TDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLK 207

[Close]

BLAST of CmaCh18G002370 vs. ExPASy Swiss-Prot
Match: O48915 (Protein NDR1 OS=Arabidopsis thaliana OX=3702 GN=NDR1 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.6e-13
Identity = 52/174 (29.89%), Postives = 81/174 (46.55%), Query Frame = 0


Query: 46  CAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLE-TGFENAQIAFNVTARNS 105
           C   LS +   G+ +  LWLSLR  +P+  I +F +P LG +    +N  + F V   N 
Sbjct: 15  CTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNFMVRCDNP 74

Query: 106 NLNIGIYYGSI-TGSVYYRDQKIGSTPL-------LDSYYEGPKTTKVLAAVLSGATLNI 165
           N + GIYY  +          KI S+ L       +  +Y+G K      A   G    +
Sbjct: 75  NKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKK----KAKKWGQVKPL 134

Query: 166 NNERWMEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSVGPDGM 211
           NN+  +        G+  FRL++ + +RF+I  W +KR+G+    DV V  DG+
Sbjct: 135 NNQTVL--RAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDGV 182

[Close]

BLAST of CmaCh18G002370 vs. ExPASy Swiss-Prot
Match: Q9SJ54 (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.7e-13
Identity = 39/162 (24.07%), Postives = 79/162 (48.77%), Query Frame = 0


Query: 45  ICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGL-ETGFENAQIAFNVTARN 104
           IC + +  ++IV I  F++W+ L+P +PRF + D +V    L +     +     + +RN
Sbjct: 21  ICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRN 80

Query: 105 SNLNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWME 164
            N  IGIYY  +     YR+Q+I     +   Y+G K   V +  + G ++ I     + 
Sbjct: 81  RNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVA 140

Query: 165 FNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSV 206
             +++++G V   +     +R+++ T  + ++ +H  C   +
Sbjct: 141 LGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFI 182

[Close]

BLAST of CmaCh18G002370 vs. ExPASy TrEMBL
Match: A0A6J1K2E7 (NDR1/HIN1-like protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111490050 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.3e-125
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT
Sbjct: 1   MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT
Sbjct: 121 YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT
Sbjct: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 225

[Close]

BLAST of CmaCh18G002370 vs. ExPASy TrEMBL
Match: A0A6J1GSN4 (NDR1/HIN1-like protein 26 OS=Cucurbita moschata OX=3662 GN=LOC111457132 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 3.7e-123
Identity = 221/225 (98.22%), Postives = 222/225 (98.67%), Query Frame = 0


Query: 1   MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           M SPSQLPVHHTNTPE RPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT
Sbjct: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           YRDQKIGSTPLLDSYYE PKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT
Sbjct: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           STIRFRISTWDSKRHGMHANCDVSVGPDGMILPS+RDVRCPVYFT
Sbjct: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 225

[Close]

BLAST of CmaCh18G002370 vs. ExPASy TrEMBL
Match: A0A5A7UTL7 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006060 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.7e-104
Identity = 187/228 (82.02%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 1   MQSPSQLPVHHTNTPERR---PIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVG 60
           M SPS LPVHHT+TPE+R   P K HH+ARYY HRVKESLTTR+SKLICAIFLSLLLI+G
Sbjct: 1   MNSPSHLPVHHTDTPEQRPTAPTKHHHSARYYAHRVKESLTTRVSKLICAIFLSLLLIIG 60

Query: 61  IITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITG 120
           IITFILWLSLRPHRPRFFIHDFSV G GL+ GFENAQI FN TARNSNLNIGIYY +++G
Sbjct: 61  IITFILWLSLRPHRPRFFIHDFSVTGFGLDNGFENAQIVFNATARNSNLNIGIYYDAMSG 120

Query: 121 SVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRL 180
           SVYY+DQKIGSTPLLDSYYEGPKTTKVL A LSGATLN++ ++WME +N+RSKG V FRL
Sbjct: 121 SVYYKDQKIGSTPLLDSYYEGPKTTKVLTAALSGATLNVDRQQWMEMSNERSKGVVVFRL 180

Query: 181 EITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           EITSTIRFRIS WDSKRHGMHANC VSVG DGMILPS++DVRCPVYFT
Sbjct: 181 EITSTIRFRISAWDSKRHGMHANCPVSVGSDGMILPSSKDVRCPVYFT 228

[Close]

BLAST of CmaCh18G002370 vs. ExPASy TrEMBL
Match: A0A1S4DSX4 (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103485613 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.7e-104
Identity = 187/228 (82.02%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 1   MQSPSQLPVHHTNTPERR---PIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVG 60
           M SPS LPVHHT+TPE+R   P K HH+ARYY HRVKESLTTR+SKLICAIFLSLLLI+G
Sbjct: 1   MNSPSHLPVHHTDTPEQRPTAPTKHHHSARYYAHRVKESLTTRVSKLICAIFLSLLLIIG 60

Query: 61  IITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITG 120
           IITFILWLSLRPHRPRFFIHDFSV G GL+ GFENAQI FN TARNSNLNIGIYY +++G
Sbjct: 61  IITFILWLSLRPHRPRFFIHDFSVTGFGLDNGFENAQIVFNATARNSNLNIGIYYDAMSG 120

Query: 121 SVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRL 180
           SVYY+DQKIGSTPLLDSYYEGPKTTKVL A LSGATLN++ ++WME +N+RSKG V FRL
Sbjct: 121 SVYYKDQKIGSTPLLDSYYEGPKTTKVLTAALSGATLNVDRQQWMEMSNERSKGVVVFRL 180

Query: 181 EITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           EITSTIRFRIS WDSKRHGMHANC VSVG DGMILPS++DVRCPVYFT
Sbjct: 181 EITSTIRFRISAWDSKRHGMHANCPVSVGSDGMILPSSKDVRCPVYFT 228

[Close]

BLAST of CmaCh18G002370 vs. ExPASy TrEMBL
Match: A0A0A0LUA7 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064760 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.1e-102
Identity = 185/228 (81.14%), Postives = 204/228 (89.47%), Query Frame = 0


Query: 1   MQSPSQLPVHHTNTPERR---PIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVG 60
           M SPS LPVHHT+TPE+    P KRHH+ARYY HRVKESLTTR+SKLICAIFLSLLLI+G
Sbjct: 1   MNSPSHLPVHHTDTPEQHPTAPTKRHHSARYYAHRVKESLTTRVSKLICAIFLSLLLIIG 60

Query: 61  IITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITG 120
           IITFILWLSLRPHRPRFFIHDF+V GL LE GFE+AQI FN TARNSNLNIGIYY +++G
Sbjct: 61  IITFILWLSLRPHRPRFFIHDFTVTGLSLENGFESAQIVFNATARNSNLNIGIYYDAMSG 120

Query: 121 SVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRL 180
           SVYY++QKIGSTPLLDSYYEGPKTTKVL A LSGATLNI+ +RWME +N+RSKG V FRL
Sbjct: 121 SVYYKEQKIGSTPLLDSYYEGPKTTKVLTAALSGATLNIDRQRWMEISNERSKGVVVFRL 180

Query: 181 EITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           EITSTIRFRIS WDSKRH MHANC VSVG DGMILPS++D+RCPVYFT
Sbjct: 181 EITSTIRFRISAWDSKRHVMHANCPVSVGSDGMILPSSKDLRCPVYFT 228

[Close]

BLAST of CmaCh18G002370 vs. NCBI nr
Match: XP_022994264.1 (NDR1/HIN1-like protein 26 [Cucurbita maxima])

HSP 1 Score: 458.0 bits (1177), Expect = 4.7e-125
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT
Sbjct: 1   MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT
Sbjct: 121 YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT
Sbjct: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 225

[Close]

BLAST of CmaCh18G002370 vs. NCBI nr
Match: XP_022955056.1 (NDR1/HIN1-like protein 26 [Cucurbita moschata] >XP_023542769.1 NDR1/HIN1-like protein 26 [Cucurbita pepo subsp. pepo] >KAG6573210.1 NDR1/HIN1-like protein 13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012384.1 NDR1/HIN1-like protein 13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 450.7 bits (1158), Expect = 7.6e-123
Identity = 221/225 (98.22%), Postives = 222/225 (98.67%), Query Frame = 0


Query: 1   MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           M SPSQLPVHHTNTPE RPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT
Sbjct: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           YRDQKIGSTPLLDSYYE PKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT
Sbjct: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           STIRFRISTWDSKRHGMHANCDVSVGPDGMILPS+RDVRCPVYFT
Sbjct: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 225

[Close]

BLAST of CmaCh18G002370 vs. NCBI nr
Match: XP_023522985.1 (NDR1/HIN1-like protein 26, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.0 bits (1146), Expect = 1.9e-121
Identity = 219/223 (98.21%), Postives = 220/223 (98.65%), Query Frame = 0


Query: 1   MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           M SPSQLPVHHTNTPE RPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT
Sbjct: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           YRDQKIGSTPLLDSYYE PKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT
Sbjct: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVY 224
           STIRFRISTWDSKRHGMHANCDVSVGPDGMILPS+RDVRCPVY
Sbjct: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVY 223

[Close]

BLAST of CmaCh18G002370 vs. NCBI nr
Match: XP_038895222.1 (NDR1/HIN1-like protein 26 [Benincasa hispida])

HSP 1 Score: 396.4 bits (1017), Expect = 1.7e-106
Identity = 187/225 (83.11%), Postives = 207/225 (92.00%), Query Frame = 0


Query: 1   MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           M SPSQLPVHHTNTPE+RP K HH+ARYY HRVKES+TTR+SKLICAIFLSLLLI+GIIT
Sbjct: 1   MSSPSQLPVHHTNTPEQRPTKHHHSARYYAHRVKESITTRVSKLICAIFLSLLLIIGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSV GL L+ GFENAQI FNVTARNSNLNIGIYY S++GSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVTGLALDNGFENAQIVFNVTARNSNLNIGIYYDSMSGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           Y+DQK+GSTPLLDSYYE PKTTKVL A LSG TLN++ +RWME +N+RSKG VAFRLEI+
Sbjct: 121 YKDQKLGSTPLLDSYYEAPKTTKVLTAALSGETLNVDRQRWMEISNERSKGAVAFRLEIS 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           STIRF+IS WDSKRHGMHANC VSVGPDGMILPS++D+RCPVYFT
Sbjct: 181 STIRFKISAWDSKRHGMHANCVVSVGPDGMILPSSKDIRCPVYFT 225

[Close]

BLAST of CmaCh18G002370 vs. NCBI nr
Match: XP_016899097.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >KAA0056885.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa] >TYJ99388.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 388.7 bits (997), Expect = 3.5e-104
Identity = 187/228 (82.02%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 1   MQSPSQLPVHHTNTPERR---PIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVG 60
           M SPS LPVHHT+TPE+R   P K HH+ARYY HRVKESLTTR+SKLICAIFLSLLLI+G
Sbjct: 1   MNSPSHLPVHHTDTPEQRPTAPTKHHHSARYYAHRVKESLTTRVSKLICAIFLSLLLIIG 60

Query: 61  IITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITG 120
           IITFILWLSLRPHRPRFFIHDFSV G GL+ GFENAQI FN TARNSNLNIGIYY +++G
Sbjct: 61  IITFILWLSLRPHRPRFFIHDFSVTGFGLDNGFENAQIVFNATARNSNLNIGIYYDAMSG 120

Query: 121 SVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRL 180
           SVYY+DQKIGSTPLLDSYYEGPKTTKVL A LSGATLN++ ++WME +N+RSKG V FRL
Sbjct: 121 SVYYKDQKIGSTPLLDSYYEGPKTTKVLTAALSGATLNVDRQQWMEMSNERSKGVVVFRL 180

Query: 181 EITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           EITSTIRFRIS WDSKRHGMHANC VSVG DGMILPS++DVRCPVYFT
Sbjct: 181 EITSTIRFRISAWDSKRHGMHANCPVSVGSDGMILPSSKDVRCPVYFT 228

[Close]

BLAST of CmaCh18G002370 vs. TAIR 10
Match: AT4G05220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 275.0 bits (702), Expect = 5.3e-74
Identity = 124/219 (56.62%), Postives = 165/219 (75.34%), Query Frame = 0


Query: 7   LPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIITFILWLS 66
           +P+  +  P  +P+KRHH+A YY HRV+ESL+TR+SK ICA+FL +L  VG+I FILWLS
Sbjct: 8   IPIRTSPVPRAQPMKRHHSASYYAHRVRESLSTRISKFICAMFLLVLFFVGVIAFILWLS 67

Query: 67  LRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVYYRDQKI 126
           LRPHRPRF I DF V GL   TG ENA+IAFNVT  N N ++G+Y+ S+ GS+YY+DQ++
Sbjct: 68  LRPHRPRFHIQDFVVQGLDQPTGVENARIAFNVTILNPNQHMGVYFDSMEGSIYYKDQRV 127

Query: 127 GSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEITSTIRFR 186
           G  PLL+ +++ P  T ++   L+GA+L +N+ RW EF+NDR++GTV FRL+I STIRF+
Sbjct: 128 GLIPLLNPFFQQPTNTTIVTGTLTGASLTVNSNRWTEFSNDRAQGTVGFRLDIVSTIRFK 187

Query: 187 ISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           +  W SK H MHANC++ VG DG+ILP     RCPVYFT
Sbjct: 188 LHRWISKHHRMHANCNIVVGRDGLILPKFNHKRCPVYFT 226

[Close]

BLAST of CmaCh18G002370 vs. TAIR 10
Match: AT1G61760.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 258.1 bits (658), Expect = 6.7e-69
Identity = 122/219 (55.71%), Postives = 159/219 (72.60%), Query Frame = 0


Query: 7   LPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIITFILWLS 66
           LPV   + P  RPI RHH+A   VHRVKESLTTR+SKLICAIFLSLLL +GIITFILW+S
Sbjct: 8   LPVR--SNPSTRPISRHHSASNIVHRVKESLTTRVSKLICAIFLSLLLCLGIITFILWIS 67

Query: 67  LRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVYYRDQKI 126
           L+PHRPR  I  FS+ GL    GFE + I+F +TA N N N+GIYY S+ GSVYY++++I
Sbjct: 68  LQPHRPRVHIRGFSISGLSRPDGFETSHISFKITAHNPNQNVGIYYDSMEGSVYYKEKRI 127

Query: 127 GSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEITSTIRFR 186
           GST L + +Y+ PK T  +   LS   + +N +RWME   DR++G + FRL++ S IRF+
Sbjct: 128 GSTKLTNPFYQDPKNTSSIDGALSRPAMAVNKDRWMEMERDRNQGKIMFRLKVRSMIRFK 187

Query: 187 ISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 226
           + TW SK H M+A+C + +G DGM+L + +D RCPVYFT
Sbjct: 188 VYTWHSKSHKMYASCYIEIGWDGMLLSATKDKRCPVYFT 224

[Close]

BLAST of CmaCh18G002370 vs. TAIR 10
Match: AT4G01410.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-18
Identity = 52/162 (32.10%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 43  KLICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLET-GFENAQIAFNVTA 102
           + IC    ++L+I+GII  ILWL  RPH+PR  +   ++  L        +  + F+V A
Sbjct: 42  RAICGAIFTILVILGIIALILWLVYRPHKPRLTVVGAAIYDLNFTAPPLISTSVQFSVLA 101

Query: 103 RNSNLNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERW 162
           RN N  + I+Y  ++  V Y+DQ I     L     G K+T V+A V+ G  + ++ E  
Sbjct: 102 RNPNRRVSIHYDKLSMYVTYKDQIITPPLPLPPLRLGHKSTVVIAPVMGGNGIPVSPEVA 161

Query: 163 MEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDV 204
               ND + G V  R+ I   +R++     + R+G +A CDV
Sbjct: 162 NGLKNDEAYGVVLMRVVIFGRLRWKAGAIKTGRYGFYARCDV 203

[Close]

BLAST of CmaCh18G002370 vs. TAIR 10
Match: AT5G22200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-17
Identity = 45/163 (27.61%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 50  LSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGL-ETGFENAQIAFNVTARNSNLNI 109
           L L++ V  + F++W  L PH PRF + D ++    + +  F ++ +   V++RN N  I
Sbjct: 29  LGLIVAVAFVVFLVWAILHPHGPRFVLQDVTINDFNVSQPNFLSSNLQVTVSSRNPNDKI 88

Query: 110 GIYYGSITGSVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDR 169
           GI+Y  +   V YR+Q++    LL S Y+G     V +  L G+ + +        N D 
Sbjct: 89  GIFYDRLDIYVTYRNQEVTLARLLPSTYQGHLEVTVWSPFLIGSAVPVAPYLSSALNEDL 148

Query: 170 SKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSVGPDGMI 212
             G V   ++I   +R+++ +W S  + +H NC   +   G +
Sbjct: 149 FAGLVLLNIKIDGWVRWKVGSWVSGSYRLHVNCPAFITVTGKL 191

[Close]

BLAST of CmaCh18G002370 vs. TAIR 10
Match: AT3G44220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-16
Identity = 44/163 (26.99%), Postives = 82/163 (50.31%), Query Frame = 0


Query: 40  RLSKLICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGL-ETGFENAQIAFN 99
           ++ K I A+ L  L  V  + F++W  L PH PRF + D ++    + +  +  + +   
Sbjct: 15  KMRKRIGALVLGFLAAVLFVVFLVWAILHPHGPRFVLQDATIYAFNVSQPNYLTSNLQVT 74

Query: 100 VTARNSNLNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINN 159
           +++RN N  IGI+Y  +     YR+Q++    LL + Y+G     + +  L G T+ +  
Sbjct: 75  LSSRNPNDKIGIFYDRLDIYASYRNQQVTLATLLPATYQGHLDVTIWSPFLYGTTVPVAP 134

Query: 160 ERWMEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANC 202
                 + D + G V   ++I   +R+++ TW S R+ +H NC
Sbjct: 135 YFSPALSQDLTAGMVLLNIKIDGWVRWKVGTWVSGRYRLHVNC 177

The following BLAST results are available for this feature:

BLAST of CmaCh18G002370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVD2	7.1e-15	32.37	NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1	[more]
Q9FI03	1.6e-14	28.85	NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1	[more]
Q9SRN1	5.1e-13	28.39	NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1	[more]
O48915	6.6e-13	29.89	Protein NDR1 OS=Arabidopsis thaliana OX=3702 GN=NDR1 PE=1 SV=1	[more]
Q9SJ54	8.7e-13	24.07	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1	[more]

BLAST of CmaCh18G002370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K2E7	2.3e-125	100.00	NDR1/HIN1-like protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111490050 PE=4 SV=1	[more]
A0A6J1GSN4	3.7e-123	98.22	NDR1/HIN1-like protein 26 OS=Cucurbita moschata OX=3662 GN=LOC111457132 PE=4 SV=...	[more]
A0A5A7UTL7	1.7e-104	82.02	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S4DSX4	1.7e-104	82.02	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103485613 PE=4 SV=1	[more]
A0A0A0LUA7	2.1e-102	81.14	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064760 PE=4 ...	[more]

BLAST of CmaCh18G002370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994264.1	4.7e-125	100.00	NDR1/HIN1-like protein 26 [Cucurbita maxima]	[more]
XP_022955056.1	7.6e-123	98.22	NDR1/HIN1-like protein 26 [Cucurbita moschata] >XP_023542769.1 NDR1/HIN1-like pr...	[more]
XP_023522985.1	1.9e-121	98.21	NDR1/HIN1-like protein 26, partial [Cucurbita pepo subsp. pepo]	[more]
XP_038895222.1	1.7e-106	83.11	NDR1/HIN1-like protein 26 [Benincasa hispida]	[more]
XP_016899097.1	3.5e-104	82.02	PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >KAA0056885.1 NDR1/HIN1-like...	[more]

BLAST of CmaCh18G002370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05220.1	5.3e-74	56.62	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G61760.1	6.7e-69	55.71	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT4G01410.1	7.0e-18	32.10	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G22200.1	4.6e-17	27.61	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G44220.1	3.9e-16	26.99	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 98..201 e-value: 2.5E-9 score: 37.6
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 22..225
None	No IPR available	PANTHER	PTHR31415:SF3	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 22..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G002370.1	CmaCh18G002370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma