CmaCh18G001880 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G001880
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description60S ribosomal protein L27A
LocationCma_Chr18: 977231 .. 979147 (-)
RNA-Seq ExpressionCmaCh18G001880
SyntenyCmaCh18G001880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACCCGCTTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGTGCCGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGCGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCCCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGTCCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGCGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAGAATGGTGGTGCGGTTGTCCTTACGGCTTAGGTTTATTGGGTAATTGTTAGTTATGATTATGTTTCAAAATTAGTTTGATATTTCTTGTGGCGTATTCGACATAGGATTAATGTTATCAAACTTCGTGTTTCAGTTTCCTTTCTTTACTGTGAACTCAGTCAATTTTGAATATGTTTCTTGAATTGTCATGTTACTTGAAATCTTATACATTGTTAATTTCGGTAGCTTTTTGGGATTTTGCTATCATTATTGAAGATGCCCTTGTGTTCTAGGTAGATCTTATCCGACTTACTAGCAAAGAAATAGGTTGTCTCCATTGAAGCAGTGCAATTTTTCCTCCAAATAGATCTGCTGTTGATAGTAGTTCATCTTTTTAGCATCAGCTGGAATGTTTCTTTTGTCGGTGTTATTTACACAATTAGACTGGGATCAATGGAGTGAGTTCACGTTGGTATGAGTTCAGTGTTCAATATCTTGATATATTGATGGAGATCAGTGTTCAATATCTCAAAGTGGACAATGGAGATTAGTGATTCTGTTTGATATATTGATGTTCAGTGTTCAATATCTTTCCAGCTTTCATAATTTTTTCTCGATGTAGCTGCTAATAGAAGTTAAAATCGATGGAGCTGCTAATATGTTGATCGAAATTGTAAGCTTGAGATTGGGATGATCTGAATAAAATAGTTAATGACTAGATATCAGTGCTTTGAATATCAAAATAGGTTTCATTTGTGATGTGTAGTGTTTAGGTTTTGAGATATCATTTCTTCAACACAAAATTTGATTATTGTTATTGTTGTATTTTGGGTTAGTTTGGTTGACCTAATAAAAAATTTAAACTTGTGGGGATGAATTGTAGCCCTATTTTGTGAACTCGCATGTTGGATTGTAGCCCTGTTTTCGTGTTGGATTGTAGACCTGTTTTCGTGTTGGATTGTAGCCCTGTTTTCGTGTTGGATTGTAGCCCTGTTTTCGTGTTGGATTGTAGCCCTGTTTTCCGGTTAGATTGTAGCCCTGTTTTCCGGTTGGTTGATTGGATTGACTTAATAATAAATGGTAACCGGATAACGTTGAATTTTAAAAAAAATTCAACCGGGACGGAATTGAAGGTTCCGGTAGATTTTAATAATGTTGAGCATAAATGATCCAATATAATTAAATATATTTACCATTTTCATTTAAACAGAAAATAAACTTTCTTTAAATTAAATAATGTATAATGCATCGAATTTGGATTGAAATTTTAGAATGTAACCTTCATTTTTTATTTTACTTTTTCAATAGGTTATTGGGCGAGTTAATTCTTAGTGGGTGACGGAGTAGGCATACAGACAAATGCCTCTCTGTCTCTGCCTCTGCGGTGACTCTTCACGAAGAATGTCTGTGTTTCTATCATTACCCTCAGCTCCACAAACAAACACAATCACGAGGCCACAATTAAAATAAATAAATAAATAATTTATTTCCAATATATTTTACCAAATTTAAGCTCTTTCTCTTTCC

mRNA sequence

ATGACGACCCGCTTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGTGCCGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGCGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCCCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGTCCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGCGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAGAATGGTGGTGCGGTTATTGGGCGAGTTAATTCTTAGTGGGTGACGGAGTAGGCATACAGACAAATGCCTCTCTGTCTCTGCCTCTGCGGTGACTCTTCACGAAGAATGTCTGTGTTTCTATCATTACCCTCAGCTCCACAAACAAACACAATCACGAGGCCACAATTAAAATAAATAAATAAATAATTTATTTCCAATATATTTTACCAAATTTAAGCTCTTTCTCTTTCC

Coding sequence (CDS)

ATGACGACCCGCTTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGTGCCGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGCGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCCCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGTCCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGCGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAGAATGGTGGTGCGGTTATTGGGCGAGTTAATTCTTAG

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPVVVKAKLISKIAEKKIKENGGAVIGRVNS
Homology
[Close]
BLAST of CmaCh18G001880 vs. ExPASy Swiss-Prot
Match: P49637 (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 6.0e-71
Identity = 128/143 (89.51%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISK AEKKIKE GGAV+
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. ExPASy Swiss-Prot
Match: Q9LR33 (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.5e-69
Identity = 126/143 (88.11%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISK AEKKIKE GGAV+
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. ExPASy Swiss-Prot
Match: Q56K03 (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 195.7 bits (496), Expect = 3.8e-49
Identity = 96/146 (65.75%), Postives = 117/146 (80.14%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVI 144
           QPV+VKAK  S+ AE+KIK  GGA +
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACV 145

[Close]
BLAST of CmaCh18G001880 vs. ExPASy Swiss-Prot
Match: P14115 (60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5)

HSP 1 Score: 195.7 bits (496), Expect = 3.8e-49
Identity = 96/146 (65.75%), Postives = 117/146 (80.14%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVI 144
           QPV+VKAK  S+ AE+KIK  GGA +
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACV 145

[Close]
BLAST of CmaCh18G001880 vs. ExPASy Swiss-Prot
Match: P18445 (60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 195.7 bits (496), Expect = 3.8e-49
Identity = 96/146 (65.75%), Postives = 117/146 (80.14%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVI 144
           QPV+VKAK  S+ AE+KIK  GGA +
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACV 145

[Close]
BLAST of CmaCh18G001880 vs. ExPASy TrEMBL
Match: A0A6J1JWJ1 (60S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111490319 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.9e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISKIAEKKIKENGGAV+
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. ExPASy TrEMBL
Match: A0A6J1GVV4 (60S ribosomal protein L27a-3-like OS=Cucurbita moschata OX=3662 GN=LOC111457307 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.4e-76
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISKIAEKKIKENGGAV+
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. ExPASy TrEMBL
Match: A0A5A7UL02 (60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003900 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.2e-75
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISKIAEKKIKENGGAV+
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. ExPASy TrEMBL
Match: A0A1S3AXX5 (60S ribosomal protein L27a-3-like OS=Cucumis melo OX=3656 GN=LOC103483791 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.2e-75
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISKIAEKKIKENGGAV+
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. ExPASy TrEMBL
Match: A0A6J1C5F8 (60S ribosomal protein L27a-3-like OS=Momordica charantia OX=3673 GN=LOC111008562 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.4e-75
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG +PENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVMPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISKIAEKKIKENGGAV+
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. NCBI nr
Match: XP_022994677.1 (60S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023541109.1 60S ribosomal protein L27a-3-like [Cucurbita pepo subsp. pepo] >KAG6573080.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012266.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.3 bits (752), Expect = 6.0e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISKIAEKKIKENGGAV+
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. NCBI nr
Match: XP_022955304.1 (60S ribosomal protein L27a-3-like [Cucurbita moschata])

HSP 1 Score: 292.7 bits (748), Expect = 1.7e-75
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISKIAEKKIKENGGAV+
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. NCBI nr
Match: XP_008438796.1 (PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo] >KAA0055257.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa] >TYJ99181.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 290.8 bits (743), Expect = 6.6e-75
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISKIAEKKIKENGGAV+
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. NCBI nr
Match: XP_022136990.1 (60S ribosomal protein L27a-3-like [Momordica charantia])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG +PENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVMPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISKIAEKKIKENGGAV+
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. NCBI nr
Match: XP_038893626.1 (60S ribosomal protein L27a-3 [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKA+KDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKATKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISKIAEKKIKENGGAV+
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. TAIR 10
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 268.1 bits (684), Expect = 4.3e-72
Identity = 128/143 (89.51%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISK AEKKIKE GGAV+
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. TAIR 10
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 262.7 bits (670), Expect = 1.8e-70
Identity = 126/143 (88.11%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKLISK AEKKIKE GGAV+
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVV 143

[Close]
BLAST of CmaCh18G001880 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-29
Identity = 76/143 (53.15%), Postives = 81/143 (56.64%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYC IVN+DKLWS+                          VLGKG LPEN+PV
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSM--------------------------VLGKGFLPENKPV 98

Query: 121 VVKAKLISKIAEKKIKENGGAVI 144
           VVKAKL+S   EKKIKE G AV+
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVV 98

The following BLAST results are available for this feature:
BLAST of CmaCh18G001880 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P496376.0e-7189.5160S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=... [more]
Q9LR332.5e-6988.1160S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=... [more]
Q56K033.8e-4965.7560S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3[more]
P141153.8e-4965.7560S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5[more]
P184453.8e-4965.7560S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3[more]
BLAST of CmaCh18G001880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JWJ12.9e-7699.3060S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111490319 PE... [more]
A0A6J1GVV48.4e-7698.6060S ribosomal protein L27a-3-like OS=Cucurbita moschata OX=3662 GN=LOC111457307 ... [more]
A0A5A7UL023.2e-7598.6060S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3AXX53.2e-7598.6060S ribosomal protein L27a-3-like OS=Cucumis melo OX=3656 GN=LOC103483791 PE=3 S... [more]
A0A6J1C5F85.4e-7597.9060S ribosomal protein L27a-3-like OS=Momordica charantia OX=3673 GN=LOC111008562... [more]
BLAST of CmaCh18G001880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022994677.16.0e-7699.3060S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023541109.1 60S ribosom... [more]
XP_022955304.11.7e-7598.6060S ribosomal protein L27a-3-like [Cucurbita moschata][more]
XP_008438796.16.6e-7598.60PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo] >KAA0055257.1 60S ri... [more]
XP_022136990.11.1e-7497.9060S ribosomal protein L27a-3-like [Momordica charantia][more]
XP_038893626.11.5e-7497.9060S ribosomal protein L27a-3 [Benincasa hispida][more]
BLAST of CmaCh18G001880 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70600.14.3e-7289.51Ribosomal protein L18e/L15 superfamily protein [more]
AT1G23290.11.8e-7088.11Ribosomal protein L18e/L15 superfamily protein [more]
AT1G12960.15.8e-2953.15Ribosomal protein L18e/L15 superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021131Ribosomal protein L18e/L15PPFAMPF00828Ribosomal_L27Acoord: 28..142
e-value: 2.1E-19
score: 70.4
NoneNo IPR availableGENE3D3.100.10.10coord: 58..144
e-value: 4.4E-38
score: 131.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR11721:SF2160S RIBOSOMAL PROTEIN L27A-3coord: 1..143
NoneNo IPR availablePANTHERPTHR1172160S RIBOSOMAL PROTEIN L27Acoord: 1..143
IPR001196Ribosomal protein L15, conserved sitePROSITEPS00475RIBOSOMAL_L15coord: 107..139
IPR030878Ribosomal protein L15HAMAPMF_01341Ribosomal_L15coord: 1..145
score: 11.312717
IPR036227Ribosomal L18e/L15P superfamilySUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 6..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G001880.1CmaCh18G001880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome