CmaCh18G001590 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G001590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-H2 finger protein ATL56-like
Location	Cma_Chr18: 801770 .. 802397 (-)
RNA-Seq Expression	CmaCh18G001590
Synteny	CmaCh18G001590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGTTGCTGGTCGGAATCGCTGTTCTGGTAGTGATTCATGTGTGTATTGTGGGGAGAGCTTTCAGAGGAGAAAGGGAAGGGATTTGGAGAAGCAATTTGGGAAAGAACCTTTCAAATCAGGATTTGGAGAAGCTTCCATGTTATGAGTACAAATCAGGGGAGAAACAGAGCACAAATGGCGTTGATTTGGAATGTGTTGTTTGTTTGGAGGGCTTCAAAACAGGGGAAAGATGCAGGTTGCTGCCCAATTGCAGGCATAGCTTCCATGTTGAGTGCATAGATTCATGGCTTTTGAAGACACCCATTTGCCCAATTTGCAGAACTTGCGCTGCTGTTCCTAAATTTGGCTTGGTTTTGGAGCACCAAAATGACCCTTTATAAGATAAGGATGAAAAGGGTATGCTTTTTTTGTTTGTTCAATCAAGTTTAGCTGACAAGTGACACCCACTTCCTCCGCCGGGTGCGGTGGCCGGAGGGAGATGAAGTTCAGAAGAAGGGCCGCCGCCTGTCTGTAAGTGGGGTGGAGCTCACAGTTGGAGAATTTGAGGAAGGGGAGCGGCTAAGAGGGAAGAAGAAGAAGGGTGGAAAGTGGGGTTAA

mRNA sequence

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGTTGCTGGTCGGAATCGCTGTTCTGGTAGTGATTCATGTGTGTATTGTGGGGAGAGCTTTCAGAGGAGAAAGGGAAGGGATTTGGAGAAGCAATTTGGGAAAGAACCTTTCAAATCAGGATTTGGAGAAGCTTCCATGTTATGAGTACAAATCAGGGGAGAAACAGAGCACAAATGGCGTTGATTTGGAATGTGTTGTTTGTTTGGAGGGCTTCAAAACAGGGGAAAGATGCAGGTTGCTGCCCAATTGCAGGCATAGCTTCCATGTTGAGTGCATAGATTCATGGCTTTTGAAGACACCCATTTGCCCAATTTGCAGAACTTGCGCTGCTGTTCCTAAATTTGGCTTGCTGACAAGTGACACCCACTTCCTCCGCCGGGTGCGGTGGCCGGAGGGAGATGAAGTTCAGAAGAAGGGCCGCCGCCTGTCTGTAAGTGGGGTGGAGCTCACAGTTGGAGAATTTGAGGAAGGGGAGCGGCTAAGAGGGAAGAAGAAGAAGGGTGGAAAGTGGGGTTAA

Coding sequence (CDS)

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGTTGCTGGTCGGAATCGCTGTTCTGGTAGTGATTCATGTGTGTATTGTGGGGAGAGCTTTCAGAGGAGAAAGGGAAGGGATTTGGAGAAGCAATTTGGGAAAGAACCTTTCAAATCAGGATTTGGAGAAGCTTCCATGTTATGAGTACAAATCAGGGGAGAAACAGAGCACAAATGGCGTTGATTTGGAATGTGTTGTTTGTTTGGAGGGCTTCAAAACAGGGGAAAGATGCAGGTTGCTGCCCAATTGCAGGCATAGCTTCCATGTTGAGTGCATAGATTCATGGCTTTTGAAGACACCCATTTGCCCAATTTGCAGAACTTGCGCTGCTGTTCCTAAATTTGGCTTGCTGACAAGTGACACCCACTTCCTCCGCCGGGTGCGGTGGCCGGAGGGAGATGAAGTTCAGAAGAAGGGCCGCCGCCTGTCTGTAAGTGGGGTGGAGCTCACAGTTGGAGAATTTGAGGAAGGGGAGCGGCTAAGAGGGAAGAAGAAGAAGGGTGGAAAGTGGGGTTAA

Protein sequence

MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAAVPKFGLLTSDTHFLRRVRWPEGDEVQKKGRRLSVSGVELTVGEFEEGERLRGKKKKGGKWG

Homology

[Close]

BLAST of CmaCh18G001590 vs. ExPASy Swiss-Prot
Match: Q8LBA0 (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-14
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 34  EREGIWRSNLGKNLSNQDLEKLPCYEYKSG--EKQSTNGVDLECVVCLEGFKTGERCRLL 93
           ERE ++     + LS   L KLPCY   S    +Q T+     C +CL+  KTGE  R L
Sbjct: 138 EREDVYGELEARGLSGDSLRKLPCYIMSSEMVRRQVTH-----CTICLQDIKTGEITRSL 197

Query: 94  PNCRHSFHVECIDSWLLKTPICPICR 118
           P C H+FH+ C+D WL++   CPICR
Sbjct: 198 PKCDHTFHLVCVDKWLIRHGSCPICR 218

[Close]

BLAST of CmaCh18G001590 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.3e-14
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           R +  K +  + L   P   Y    + +  G+D ECV+CL  F +GE+ RLLP C H FH
Sbjct: 102 RGSSNKGIKKKALRMFPVVSY--SPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFH 161

Query: 100 VECIDSWLLKTPICPICRTC 120
           V CID WL +   CP CR C
Sbjct: 162 VRCIDKWLQQHLTCPKCRNC 179

[Close]

BLAST of CmaCh18G001590 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           R      LS + +++LP  ++K  E  S  G D +CVVC++GF+ G+ CR LP C H FH
Sbjct: 83  RHEYSDGLSPRCVKRLP--QFKYCEPSSEYGGD-DCVVCIDGFRQGQWCRKLPRCGHVFH 142

Query: 100 VECIDSWLLKTPICPICR 118
            +C+D WL+K   CPICR
Sbjct: 143 RKCVDLWLIKVSTCPICR 157

[Close]

BLAST of CmaCh18G001590 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 34/80 (42.50%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           RS+  K +  + L   P   Y    + +  G+  ECV+CL  F +GE+ RLLP C H FH
Sbjct: 102 RSSSNKGIKKKALRMFPVVSY--SREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFH 161

Query: 100 VECIDSWLLKTPICPICRTC 120
           V CID WL     CP CR C
Sbjct: 162 VRCIDKWLQHHLTCPKCRHC 179

[Close]

BLAST of CmaCh18G001590 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-13
Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCI--VGRAFRGEREGIWRSNLGKNLSNQDLEKLPCY 60
           ++M  +    L+L+GIA ++++ + +  + R  R  R    R      LS++ ++KLP  
Sbjct: 37  VIMFSIFFLFLVLIGIASVLILPLLLSSLHRHHRRRRRN-RRQESSDGLSSRFVKKLP-- 96

Query: 61  EYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICR 118
           ++K  E  +    + +CVVC +GF+ G+ CR LP C H FH +C+D+WLLK   CPICR
Sbjct: 97  QFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICR 152

[Close]

BLAST of CmaCh18G001590 vs. ExPASy TrEMBL
Match: A0A6J1JUU5 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.5e-66
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60
           MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120
           KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

Query: 121 AVPKFGLL 129
           AVPKFGL+
Sbjct: 121 AVPKFGLV 128

[Close]

BLAST of CmaCh18G001590 vs. ExPASy TrEMBL
Match: A0A6J1GQW8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.4e-66
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60
           MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120
           KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

Query: 121 AVPKFGLL 129
            VPKFGL+
Sbjct: 121 VVPKFGLV 128

[Close]

BLAST of CmaCh18G001590 vs. ExPASy TrEMBL
Match: A0A6P3YXL3 (RING-H2 finger protein ATL74-like OS=Ziziphus jujuba OX=326968 GN=LOC107406134 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 83/137 (60.58%), Postives = 103/137 (75.18%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG-----IWRSNLG-KNLSNQDLEK 60
           MVMEIV+S +LL VGIAVLVVIHVCIVGRAF    +G     + RS++G K +SN+DL+ 
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFGRGNQGMVNMVVQRSSIGSKRMSNEDLKM 60

Query: 61  LPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICP 120
           LPC++Y  G  + ++   ++C VCLE FK GE+CRLLPNCRHSFH  CIDSWLLKTPICP
Sbjct: 61  LPCFDYVDGRDKGSSSSPVDCAVCLENFKDGEKCRLLPNCRHSFHALCIDSWLLKTPICP 120

Query: 121 ICRTCAAVPKFGLLTSD 132
           ICRTCA  PK  ++  +
Sbjct: 121 ICRTCANPPKVDVILGE 137

[Close]

BLAST of CmaCh18G001590 vs. ExPASy TrEMBL
Match: A0A2P5F6F5 (43kDa postsynaptic protein OS=Trema orientale OX=63057 GN=TorRG33x02_109420 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 84/136 (61.76%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWR---SNL--GKNLSNQDLEKL 60
           MVMEIV+S +LL VGIAVLVVIHVCIVGRAFR   +G+     SN+   KN+S++DL+ +
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFRRGNQGLGTAQGSNITGTKNMSSEDLKMI 60

Query: 61  PCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPI 120
           PC++Y  G+ + T+ VD  C VCLE FKTG++CRLLP+CRHSFH +CIDSWLLK PICPI
Sbjct: 61  PCFDYMGGDNKGTSPVD--CAVCLENFKTGDKCRLLPSCRHSFHSQCIDSWLLKAPICPI 120

Query: 121 CRTCAAVPKFGLLTSD 132
           CRT A VPK G+++ +
Sbjct: 121 CRTSAKVPKSGVVSGE 134

[Close]

BLAST of CmaCh18G001590 vs. ExPASy TrEMBL
Match: A0A498I361 (RING-type domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_039581 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 77/128 (60.16%), Postives = 97/128 (75.78%), Query Frame = 0


Query: 3   MEIVVSAVLLLVGIAVLVVIHVCIVGRAF-RGEREGIWRSNLG-----KNLSNQDLEKLP 62
           MEI++S +LL VG+AVLVVIHVCI+GRAF RG  +G+ R         K +SN++L  LP
Sbjct: 1   MEILISVILLFVGVAVLVVIHVCIIGRAFNRGNDQGVNRVQRNSIVAIKKMSNEELNMLP 60

Query: 63  CYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPIC 122
           C++Y + EK +T    ++C VCLE FK GE+CRLLPNCRHSFH +CIDSWLLKTP+CP+C
Sbjct: 61  CFDYTAEEKGTTTNHPVDCAVCLESFKGGEKCRLLPNCRHSFHAQCIDSWLLKTPVCPVC 120

Query: 123 RTCAAVPK 125
           RTCA  PK
Sbjct: 121 RTCARTPK 128

[Close]

BLAST of CmaCh18G001590 vs. NCBI nr
Match: XP_022994122.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 5.3e-66
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60
           MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120
           KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

Query: 121 AVPKFGLL 129
           AVPKFGL+
Sbjct: 121 AVPKFGLV 128

[Close]

BLAST of CmaCh18G001590 vs. NCBI nr
Match: XP_022954431.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo] >KAG6573050.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012238.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60
           MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120
           KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

Query: 121 AVPKFGLL 129
            VPKFGL+
Sbjct: 121 VVPKFGLV 128

[Close]

BLAST of CmaCh18G001590 vs. NCBI nr
Match: XP_015868270.1 (RING-H2 finger protein ATL74-like [Ziziphus jujuba] >XP_015868724.1 RING-H2 finger protein ATL74-like [Ziziphus jujuba] >XP_015872990.1 RING-H2 finger protein ATL74-like [Ziziphus jujuba])

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-38
Identity = 83/137 (60.58%), Postives = 103/137 (75.18%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG-----IWRSNLG-KNLSNQDLEK 60
           MVMEIV+S +LL VGIAVLVVIHVCIVGRAF    +G     + RS++G K +SN+DL+ 
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFGRGNQGMVNMVVQRSSIGSKRMSNEDLKM 60

Query: 61  LPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICP 120
           LPC++Y  G  + ++   ++C VCLE FK GE+CRLLPNCRHSFH  CIDSWLLKTPICP
Sbjct: 61  LPCFDYVDGRDKGSSSSPVDCAVCLENFKDGEKCRLLPNCRHSFHALCIDSWLLKTPICP 120

Query: 121 ICRTCAAVPKFGLLTSD 132
           ICRTCA  PK  ++  +
Sbjct: 121 ICRTCANPPKVDVILGE 137

[Close]

BLAST of CmaCh18G001590 vs. NCBI nr
Match: PON93371.1 (43kDa postsynaptic protein [Trema orientale])

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-38
Identity = 84/136 (61.76%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWR---SNL--GKNLSNQDLEKL 60
           MVMEIV+S +LL VGIAVLVVIHVCIVGRAFR   +G+     SN+   KN+S++DL+ +
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFRRGNQGLGTAQGSNITGTKNMSSEDLKMI 60

Query: 61  PCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPI 120
           PC++Y  G+ + T+ VD  C VCLE FKTG++CRLLP+CRHSFH +CIDSWLLK PICPI
Sbjct: 61  PCFDYMGGDNKGTSPVD--CAVCLENFKTGDKCRLLPSCRHSFHSQCIDSWLLKAPICPI 120

Query: 121 CRTCAAVPKFGLLTSD 132
           CRT A VPK G+++ +
Sbjct: 121 CRTSAKVPKSGVVSGE 134

[Close]

BLAST of CmaCh18G001590 vs. NCBI nr
Match: TQD76870.1 (hypothetical protein C1H46_037576 [Malus baccata])

HSP 1 Score: 164.9 bits (416), Expect = 6.7e-37
Identity = 78/128 (60.94%), Postives = 100/128 (78.12%), Query Frame = 0


Query: 3   MEIVVSAVLLLVGIAVLVVIHVCIVGRAF-RGEREG---IWRSNLG--KNLSNQDLEKLP 62
           MEI++S +LL VG+AVLVVIHVCI+GRAF RG  +G   + RS++   K +SN++L  LP
Sbjct: 1   MEILISVILLFVGVAVLVVIHVCIIGRAFNRGHDQGVNLVQRSSIVAIKKMSNEELNMLP 60

Query: 63  CYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPIC 122
           C++Y + EK +T    ++C VCLE FK GE+CRLLPNCRHSFH +CIDSWLLKTP+CP+C
Sbjct: 61  CFDYTAEEKGTTTNHPVDCAVCLESFKRGEKCRLLPNCRHSFHAQCIDSWLLKTPVCPVC 120

Query: 123 RTCAAVPK 125
           RTCA  PK
Sbjct: 121 RTCAKTPK 128

[Close]

BLAST of CmaCh18G001590 vs. TAIR 10
Match: AT1G74410.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-15
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 34  EREGIWRSNLGKNLSNQDLEKLPCYEYKSG--EKQSTNGVDLECVVCLEGFKTGERCRLL 93
           ERE ++     + LS   L KLPCY   S    +Q T+     C +CL+  KTGE  R L
Sbjct: 138 EREDVYGELEARGLSGDSLRKLPCYIMSSEMVRRQVTH-----CTICLQDIKTGEITRSL 197

Query: 94  PNCRHSFHVECIDSWLLKTPICPICR 118
           P C H+FH+ C+D WL++   CPICR
Sbjct: 198 PKCDHTFHLVCVDKWLIRHGSCPICR 218

[Close]

BLAST of CmaCh18G001590 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 4.5e-15
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           R +  K +  + L   P   Y    + +  G+D ECV+CL  F +GE+ RLLP C H FH
Sbjct: 102 RGSSNKGIKKKALRMFPVVSY--SPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFH 161

Query: 100 VECIDSWLLKTPICPICRTC 120
           V CID WL +   CP CR C
Sbjct: 162 VRCIDKWLQQHLTCPKCRNC 179

[Close]

BLAST of CmaCh18G001590 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 34/80 (42.50%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           RS+  K +  + L   P   Y    + +  G+  ECV+CL  F +GE+ RLLP C H FH
Sbjct: 102 RSSSNKGIKKKALRMFPVVSY--SREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFH 161

Query: 100 VECIDSWLLKTPICPICRTC 120
           V CID WL     CP CR C
Sbjct: 162 VRCIDKWLQHHLTCPKCRHC 179

[Close]

BLAST of CmaCh18G001590 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 40  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFH 99
           R      LS + +++LP  ++K  E  S  G D +CVVC++GF+ G+ CR LP C H FH
Sbjct: 83  RHEYSDGLSPRCVKRLP--QFKYCEPSSEYGGD-DCVVCIDGFRQGQWCRKLPRCGHVFH 142

Query: 100 VECIDSWLLKTPICPICR 118
            +C+D WL+K   CPICR
Sbjct: 143 RKCVDLWLIKVSTCPICR 157

[Close]

BLAST of CmaCh18G001590 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-14
Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 1   MVMEIVVSAVLLLVGIAVLVVIHVCI--VGRAFRGEREGIWRSNLGKNLSNQDLEKLPCY 60
           ++M  +    L+L+GIA ++++ + +  + R  R  R    R      LS++ ++KLP  
Sbjct: 37  VIMFSIFFLFLVLIGIASVLILPLLLSSLHRHHRRRRRN-RRQESSDGLSSRFVKKLP-- 96

Query: 61  EYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICR 118
           ++K  E  +    + +CVVC +GF+ G+ CR LP C H FH +C+D+WLLK   CPICR
Sbjct: 97  QFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICR 152

The following BLAST results are available for this feature:

BLAST of CmaCh18G001590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBA0	3.7e-14	43.02	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV...	[more]
P0C034	6.3e-14	42.50	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q9M0C3	1.8e-13	44.87	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
Q6NML0	1.8e-13	42.50	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]
Q9ZV51	2.4e-13	36.13	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]

BLAST of CmaCh18G001590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUU5	2.5e-66	99.22	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE...	[more]
A0A6J1GQW8	7.4e-66	98.44	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 ...	[more]
A0A6P3YXL3	1.0e-38	60.58	RING-H2 finger protein ATL74-like OS=Ziziphus jujuba OX=326968 GN=LOC107406134 P...	[more]
A0A2P5F6F5	1.3e-38	61.76	43kDa postsynaptic protein OS=Trema orientale OX=63057 GN=TorRG33x02_109420 PE=4...	[more]
A0A498I361	3.2e-37	60.16	RING-type domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_039581 P...	[more]

BLAST of CmaCh18G001590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994122.1	5.3e-66	99.22	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
XP_022954431.1	1.5e-65	98.44	RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 f...	[more]
XP_015868270.1	2.1e-38	60.58	RING-H2 finger protein ATL74-like [Ziziphus jujuba] >XP_015868724.1 RING-H2 fing...	[more]
PON93371.1	2.7e-38	61.76	43kDa postsynaptic protein [Trema orientale]	[more]
TQD76870.1	6.7e-37	60.94	hypothetical protein C1H46_037576 [Malus baccata]	[more]

BLAST of CmaCh18G001590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74410.1	2.6e-15	43.02	RING/U-box superfamily protein	[more]
AT1G49220.1	4.5e-15	42.50	RING/U-box superfamily protein	[more]
AT1G49210.1	1.3e-14	42.50	RING/U-box superfamily protein	[more]
AT4G30370.1	1.3e-14	44.87	RING/U-box superfamily protein	[more]
AT2G18670.1	1.7e-14	36.13	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 75..116 e-value: 1.3E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 74..117 e-value: 1.2E-12 score: 48.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 75..117 score: 12.031935
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 38..121 e-value: 8.5E-20 score: 72.2
None	No IPR available	PANTHER	PTHR45768:SF13	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..128
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..128
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 69..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G001590.1	CmaCh18G001590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane