CmaCh18G000240 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G000240
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr18: 98060 .. 98594 (+)
RNA-Seq ExpressionCmaCh18G000240
SyntenyCmaCh18G000240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACAAGAATGAAAATGAAAGAGAATCAGCTGGTTATGGGGGGATGTCAACGTACCTTCATGCACCAACCAGCCCACATATCGTCGTAGCGTCCAATTGGCTGACCATCACCCATGAGACCGAAATACATTGCTGGGCCGATGAGCTTACGGTCAAATGCCAGATTCATGCCACACATGGGGAAGAGGGTTGACTTTGGAATAGTCAAGACTGCATCAACATACCTAAGGGATAGCTAAAACAATCAGCTTATGATTAAAAAAACAACTCTAGTGTAATTCAATCAGTTTATACCTTGTATTTCTCTCAAGGGGCTTCACAAGCTGTGTGGGTGCATCGTAATCCGGGATGTTGAGCCACAGGCCATGAGACACTGCGGTAGCGACACCCTCCCGGAGACTAAATGGATATCCACGCACGAAGTCAGCACCCTCACGGTAAGGGTCGTACAAGGTATTGAAGAAGTTCGGTGTAGACGGGGTCAGAAGGTTCTTGATGTGCTGTTCAAGTGCATTGATGTTCTTGCCTGA

mRNA sequence

ATGGGAAACAAGAATGAAAATGAAAGAGAATCAGCTGGTTATGGGGGGATGTCAACGTACCTTCATGCACCAACCAGCCCACATATCGTCGTAGCGTCCAATTGGCTGACCATCACCCATGAGACCGAAATACATTGCTGGGCCGATGAGCTTACGGGGCTTCACAAGCTGTGTGGGTGCATCGTAATCCGGGATGTTGAGCCACAGGCCATGAGACACTGCGGTAGCGACACCCTCCCGGAGACTAAATGGATATCCACGCACGAAGTCAGCACCCTCACGGTAAGGGTCGTACAAGGTATTGAAGAAGTTCGGTGTAGACGGGGTCAGAAGGTTCTTGATGTGCTGTTCAAGTGCATTGATGTTCTTGCCTGA

Coding sequence (CDS)

ATGGGAAACAAGAATGAAAATGAAAGAGAATCAGCTGGTTATGGGGGGATGTCAACGTACCTTCATGCACCAACCAGCCCACATATCGTCGTAGCGTCCAATTGGCTGACCATCACCCATGAGACCGAAATACATTGCTGGGCCGATGAGCTTACGGGGCTTCACAAGCTGTGTGGGTGCATCGTAATCCGGGATGTTGAGCCACAGGCCATGAGACACTGCGGTAGCGACACCCTCCCGGAGACTAAATGGATATCCACGCACGAAGTCAGCACCCTCACGGTAAGGGTCGTACAAGGTATTGAAGAAGTTCGGTGTAGACGGGGTCAGAAGGTTCTTGATGTGCTGTTCAAGTGCATTGATGTTCTTGCCTGA

Protein sequence

MGNKNENERESAGYGGMSTYLHAPTSPHIVVASNWLTITHETEIHCWADELTGLHKLCGCIVIRDVEPQAMRHCGSDTLPETKWISTHEVSTLTVRVVQGIEEVRCRRGQKVLDVLFKCIDVLA
Homology
BLAST of CmaCh18G000240 vs. ExPASy TrEMBL
Match: A0A7C8ZLR6 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-09
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 0

Query: 17  MSTYLHAPTSPHIVVASNWLTITHETEIHCWADE-------------------------- 76
           ++ YL AP+SPHIV+ SN L  TH+ ++H   ++                          
Sbjct: 2   ITDYLRAPSSPHIVITSNGLAFTHKAKVHGRTNQVAVESQIHTTHGEQCALRDGQDCIHI 61

Query: 77  ----LTGLHKLCGCIVIRDVEPQAMRHCGSDTLPETKWISTHEVSTLTVRVV 99
               L GL KL GCIVIRD+EPQ M   G +TL E + +ST +V+  T+ V+
Sbjct: 62  PSVPLKGLDKLGGCIVIRDIEPQTMGDRGRNTLTEAERVSTDKVNPFTIWVI 113

BLAST of CmaCh18G000240 vs. ExPASy TrEMBL
Match: C6TA33 (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 51  LTGLHKLCGCIVIRDVEPQAMRHCGSDTLPETKWISTHEVSTLTVRVVQGIEEVRCRRGQ 110
           L  LHKLC  I++ DVEP++M      T  +T+ +ST+++ T +  V++GIEE      Q
Sbjct: 27  LERLHKLCWSIIVWDVEPKSMGDSSWHTFTKTERVSTNKICTFSEGVIKGIEEQGSGWTQ 86

Query: 111 KVLDVLFKCID 122
           KV ++L +CID
Sbjct: 87  KVFNMLLECID 97

BLAST of CmaCh18G000240 vs. ExPASy TrEMBL
Match: A0A2P5EBU3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_212150 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 71  MRHCGSDTLPETKWISTHEVSTLTVRVVQGIEEVRCRRGQKVLDVLFKCIDVLA 125
           MR+C  DT P+T+W++  E+ T TV +V+G++E   RR Q VL+VL K ID  A
Sbjct: 1   MRNCSWDTFPKTEWVTPDEICTFTVWIVEGVKEKWSRRTQNVLNVLLKSIDFFA 54

BLAST of CmaCh18G000240 vs. ExPASy TrEMBL
Match: A0A103YH89 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_012560 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 54  LHKLCGCIVIRDVEPQAMRHCGSDTLPETKWISTHEVSTLTVRVVQGIEEVRC 107
           L KL   I+I +VEPQAMR+ G DTL + + ++T E+ST+  RV++GI+E+ C
Sbjct: 14  LDKLSWGIIIWNVEPQAMRNRGGDTLAKAERVATDEISTIGERVIKGIKEIGC 66

BLAST of CmaCh18G000240 vs. ExPASy TrEMBL
Match: A0A2P5BMX1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_224650 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.2e-04
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0

Query: 71  MRHCGSDTLPETKWISTHEVSTLTVRVVQGIEEVRCRRGQKVLDVLFKCIDVLA 125
           MR+   DT P+T+W++  E+ T TV +V+ +EE   RR Q VL+VL K ID  A
Sbjct: 1   MRNSSWDTFPKTEWVTPDEICTFTVWIVESVEEKWSRRTQNVLNVLLKSIDFFA 54

BLAST of CmaCh18G000240 vs. NCBI nr
Match: ACU18685.1 (unknown, partial [Glycine max])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 51  LTGLHKLCGCIVIRDVEPQAMRHCGSDTLPETKWISTHEVSTLTVRVVQGIEEVRCRRGQ 110
           L  LHKLC  I++ DVEP++M      T  +T+ +ST+++ T +  V++GIEE      Q
Sbjct: 27  LERLHKLCWSIIVWDVEPKSMGDSSWHTFTKTERVSTNKICTFSEGVIKGIEEQGSGWTQ 86

Query: 111 KVLDVLFKCID 122
           KV ++L +CID
Sbjct: 87  KVFNMLLECID 97

BLAST of CmaCh18G000240 vs. NCBI nr
Match: PON83009.1 (hypothetical protein TorRG33x02_212150 [Trema orientale])

HSP 1 Score: 58.2 bits (139), Expect = 6.0e-05
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 71  MRHCGSDTLPETKWISTHEVSTLTVRVVQGIEEVRCRRGQKVLDVLFKCIDVLA 125
           MR+C  DT P+T+W++  E+ T TV +V+G++E   RR Q VL+VL K ID  A
Sbjct: 1   MRNCSWDTFPKTEWVTPDEICTFTVWIVEGVKEKWSRRTQNVLNVLLKSIDFFA 54

BLAST of CmaCh18G000240 vs. NCBI nr
Match: KVI09064.1 (hypothetical protein Ccrd_012560 [Cynara cardunculus var. scolymus])

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-04
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 54  LHKLCGCIVIRDVEPQAMRHCGSDTLPETKWISTHEVSTLTVRVVQGIEEVRC 107
           L KL   I+I +VEPQAMR+ G DTL + + ++T E+ST+  RV++GI+E+ C
Sbjct: 14  LDKLSWGIIIWNVEPQAMRNRGGDTLAKAERVATDEISTIGERVIKGIKEIGC 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7C8ZLR64.3e-0935.71Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
C6TA331.3e-0540.85Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1[more]
A0A2P5EBU32.9e-0548.15Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_212150 PE=4 SV... [more]
A0A103YH891.9e-0449.06Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_012... [more]
A0A2P5BMX17.2e-0446.30Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_224650 PE... [more]
Match NameE-valueIdentityDescription
ACU18685.12.7e-0540.85unknown, partial [Glycine max][more]
PON83009.16.0e-0548.15hypothetical protein TorRG33x02_212150 [Trema orientale][more]
KVI09064.13.9e-0449.06hypothetical protein Ccrd_012560 [Cynara cardunculus var. scolymus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G000240.1CmaCh18G000240.1mRNA