CmaCh18G000140 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G000140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr18: 64948 .. 65516 (+)
RNA-Seq ExpressionCmaCh18G000140
SyntenyCmaCh18G000140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAATCCCCCACTAACGCCTGTGTGTGCGCTTTCAGTGCCAGAGTTATTATTATTATTTTATTTTATTTCTGTTTTTCTAAAAAAGGGCAGAGAAGTAAAAGAGATACTCCAGCCTCCAGCTCCAAATATAAGAGAACGTTTTGTTTTTAAGCGGCAATTCGAAGCAGATTCTTCTCCGTTTTCCCATCTCTTCTCTGCTTATTCAATTTACCAATTTACTCTCTTATTCTCAGATTCTGTGTGAGATTCATGGTATACTTCTCTCTGTTTCTTCATCTGTTTTTGTTTCTTAGATTTTCTCTCTTTTCTTTTCAATTTGTGTTCTTCGTCTACTGCTGTAGGTTTTTCTTAATCTTGTAGCTCGAATTGCGGACTTGCTTTCTCCAGGATGACAGGGATCATTTTCTGGAGAAACAATTAGGATTCTACACAGTGCTACTCCAGTTGACAGTTCCATTGCTGAGAAGGTATGGTGAATGCGCCTTTCTGATCTTCATATCCGCCCGTGTCTTCTTCTCCGATCCCCAAGCGATTGATTTCTCCTTGGATTTTCGACATCTGTAG

mRNA sequence

ATGCCGAATCCCCCACTAACGCCTCTCGAATTGCGGACTTGCTTTCTCCAGGATGACAGGGATCATTTTCTGGAGAAACAATTAGGATTCTACACAGTGCTACTCCAGTTGACAGTTCCATTGCTGAGAAGGTATGGTGAATGCGCCTTTCTGATCTTCATATCCGCCCGTGTCTTCTTCTCCGATCCCCAAGCGATTGATTTCTCCTTGGATTTTCGACATCTGTAG

Coding sequence (CDS)

ATGCCGAATCCCCCACTAACGCCTCTCGAATTGCGGACTTGCTTTCTCCAGGATGACAGGGATCATTTTCTGGAGAAACAATTAGGATTCTACACAGTGCTACTCCAGTTGACAGTTCCATTGCTGAGAAGGTATGGTGAATGCGCCTTTCTGATCTTCATATCCGCCCGTGTCTTCTTCTCCGATCCCCAAGCGATTGATTTCTCCTTGGATTTTCGACATCTGTAG

Protein sequence

MPNPPLTPLELRTCFLQDDRDHFLEKQLGFYTVLLQLTVPLLRRYGECAFLIFISARVFFSDPQAIDFSLDFRHL
Homology
[Close]
BLAST of CmaCh18G000140 vs. NCBI nr
Match: KAG6572912.1 (hypothetical protein SDJN03_26799, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-25
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 9   LELRTCFLQDDRDHFLEKQLGFYTVLLQLTVPLLRRYGECAFLIFISARVFFSDPQAIDF 68
           L+LRTCFLQD RD FLEKQLGFYTVLLQLTVPLLRRY ECAFLIFIS RVFFSDP AIDF
Sbjct: 115 LQLRTCFLQDHRDDFLEKQLGFYTVLLQLTVPLLRRYAECAFLIFISTRVFFSDPLAIDF 174

Query: 69  SLDFRHL 76
           SLDFRHL
Sbjct: 175 SLDFRHL 181

[Close]
BLAST of CmaCh18G000140 vs. NCBI nr
Match: KAG7012098.1 (hypothetical protein SDJN02_24849, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 9  LELRTCFLQDDRDHFLEKQLGFYTVLLQLTVPLLRR 45
          L+LRTCFLQD RD FLEKQLGFYTVLLQLTVPLLRR
Sbjct: 50 LQLRTCFLQDHRDDFLEKQLGFYTVLLQLTVPLLRR 85

The following BLAST results are available for this feature:
BLAST of CmaCh18G000140 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh18G000140 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh18G000140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572912.12.4e-2591.04hypothetical protein SDJN03_26799, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012098.11.6e-0891.67hypothetical protein SDJN02_24849, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh18G000140 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G000140.1CmaCh18G000140.1mRNA